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These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1811 cluster # 1811       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1811#0 length = 594 sequences # 1  
consensus_1811#1 length = 423 sequences # 1  

consensusID : consensus_1811#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 594
fasta sequence
                              [TAAGTGTTTGTTCATTCTCGCCAGTGTTTGCAGTTCCGAATTTCTCAAACCAGCTAAAAAGTGTATTTTTAGGTTTCGTATGGCGTACGAGTCCTCGGTGTTGTTTTTATCTGCATTAATTATGTTTTCTTTGAGTTTAAGAACCCTTTCTTTGAATGCGGAAAAAGCTTCATTTCCCCCTTGTTGTAGTGTTTCCACTTGTTGGAAAATGGCTTCTAAACTCATTTTTTCTCCAAACAGCTTAATAAGGTTTGTTTTTACTTTTACCCACGATTCGTCTAATATGCGATGAAAGAAACCAGCTGCACTACCTTTTAATTTAAACATTACGGTTCGAATTAAATCTTCCTCCGATTCACCCGCTGGTATTTGTTTAGCAAAGAATTCAACTTGATAAAGAAATCCATCTAAATCATTTGCATTTCCGTTGTATTCCGGAATACATAACATTGCCCTTTCGAGTGGAAATTCATATGCCATTTTGTGGATTGTAGTGTTTAATGCACGCTCGATTTCAATACTCTGGTTGAAAAAGTCTTCCTTAAGAATTCTGAGGTGTTCCGTATAATTATATTCTTTGTGTAGACACTGATC]

[+] EMBL BX618903             [TAAGTGTTTGTTCATTCTCGCCAGTGTTTGCAGTTCCGAATTTCTCAAACCAGCTAAAAAGTGTATTTTTAGGTTTCGTATGGCGTACGAGTCCTCGGTGTTGTTTTTATCTGCATTAATTATGTTTTCTTTGAGTTTAAGAACCCTTTCTTTGAATGCGGAAAAAGCTTCATTTCCCCCTTGTTGTAGTGTTTCCACTTGTTGGAAAATGGCTTCTAAACTCATTTTTTCTCCAAACAGCTTAATAAGGTTTGTTTTTACTTTTACCCACGATTCGTCTAATATGCGATGAAAGAAACCAGCTGCACTACCTTTTAATTTAAACATTACGGTTCGAATTAAATCTTCCTCCGATTCACCCGCTGGTATTTGTTTAGCAAAGAATTCAACTTGATAAAGAAATCCATCTAAATCATTTGCATTTCCGTTGTATTCCGGAATACATAACATTGCCCTTTCGAGTGGAAATTCATATGCCATTTTGTGGATTGTAGTGTTTAATGCACGCTCGATTTCAATACTCTGGTTGAAAAAGTCTTCCTTAAGAATTCTGAGGTGTTCCGTATAATTATATTCTTTGTGTAGACACTGATC]


>consensus_1811#0 TAAGTGTTTGTTCATTCTCGCCAGTGTTTGCAGTTCCGAATTTCTCAAACCAGCTAAAAA GTGTATTTTTAGGTTTCGTATGGCGTACGAGTCCTCGGTGTTGTTTTTATCTGCATTAAT TATGTTTTCTTTGAGTTTAAGAACCCTTTCTTTGAATGCGGAAAAAGCTTCATTTCCCCC TTGTTGTAGTGTTTCCACTTGTTGGAAAATGGCTTCTAAACTCATTTTTTCTCCAAACAG CTTAATAAGGTTTGTTTTTACTTTTACCCACGATTCGTCTAATATGCGATGAAAGAAACC AGCTGCACTACCTTTTAATTTAAACATTACGGTTCGAATTAAATCTTCCTCCGATTCACC CGCTGGTATTTGTTTAGCAAAGAATTCAACTTGATAAAGAAATCCATCTAAATCATTTGC ATTTCCGTTGTATTCCGGAATACATAACATTGCCCTTTCGAGTGGAAATTCATATGCCAT TTTGTGGATTGTAGTGTTTAATGCACGCTCGATTTCAATACTCTGGTTGAAAAAGTCTTC CTTAAGAATTCTGAGGTGTTCCGTATAATTATATTCTTTGTGTAGACACTGATC



consensusID : consensus_1811#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 423
fasta sequence
                              [CTTTCTTTATATTGAGTGAAAGGTTCATTGACTCCTTGCTGCAAAGTTTCCACTTGTTGGAAAATGGCTTCTACACTCATTTTTTCTCCAAAAAGCTTTATTAAATTTAATTTAACATTCGCCCACGTATCATCTAATATGCGACTGAAAAATCCAGCAGCATTTCCTTTTAATTTGAACATTACCGTTCTAATTAAATCCTCTTCCGATTCGCCTCTTGGTATCTGATTCGCAAAATATTCTACTTGAAATAAAAATCCATCTAATTCCTTTGCAGCTCCGTGATATTCAGGAATGCATAGCATTGCCTTTTCCGTTGGGAATTCGTAAGCCATTTTTGAAAATGACGCGTTCAACGCTCTATCGATTTCAAGGCTTTGATTTAATAATTCTCCTTTGAGAACTTGGAGGCGTTTTTGGTAA]

[+] EMBL BX626703             [CTTTCTTTATATTGAGTGAAAGGTTCATTGACTCCTTGCTGCAAAGTTTCCACTTGTTGGAAAATGGCTTCTACACTCATTTTTTCTCCAAAAAGCTTTATTAAATTTAATTTAACATTCGCCCACGTATCATCTAATATGCGACTGAAAAATCCAGCAGCATTTCCTTTTAATTTGAACATTACCGTTCTAATTAAATCCTCTTCCGATTCGCCTCTTGGTATCTGATTCGCAAAATATTCTACTTGAAATAAAAATCCATCTAATTCCTTTGCAGCTCCGTGATATTCAGGAATGCATAGCATTGCCTTTTCCGTTGGGAATTCGTAAGCCATTTTTGAAAATGACGCGTTCAACGCTCTATCGATTTCAAGGCTTTGATTTAATAATTCTCCTTTGAGAACTTGGAGGCGTTTTTGGTAA]


>consensus_1811#1 CTTTCTTTATATTGAGTGAAAGGTTCATTGACTCCTTGCTGCAAAGTTTCCACTTGTTGG AAAATGGCTTCTACACTCATTTTTTCTCCAAAAAGCTTTATTAAATTTAATTTAACATTC GCCCACGTATCATCTAATATGCGACTGAAAAATCCAGCAGCATTTCCTTTTAATTTGAAC ATTACCGTTCTAATTAAATCCTCTTCCGATTCGCCTCTTGGTATCTGATTCGCAAAATAT TCTACTTGAAATAAAAATCCATCTAATTCCTTTGCAGCTCCGTGATATTCAGGAATGCAT AGCATTGCCTTTTCCGTTGGGAATTCGTAAGCCATTTTTGAAAATGACGCGTTCAACGCT CTATCGATTTCAAGGCTTTGATTTAATAATTCTCCTTTGAGAACTTGGAGGCGTTTTTGG TAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1811#0      TAAGTGTTTGTTCATTCTCGCCAGTGTTTGCAGTTCCGAATTTCTCAAACCAGCTAAAAA 60
consensus_1811#1      ------------------------------------------------------------
                                                                                  

consensus_1811#0      GTGTATTTTTAGGTTTCGTATGGCGTACGAGTCCTCGGTGTTGTTTTTATCTGCATTAAT 120
consensus_1811#1      ------------------------------------------------------------
                                                                                  

consensus_1811#0      TATGTTTTCTTTGAGTTTAAGAACCCTTTCTTTGAATGCGGAAAAAGCTTCATTTCCCCC 180
consensus_1811#1      -------------------------CTTTCTTTATATTGAGTGAAAGGTTCATTGACTCC 35
                                               ********  **   *  **** ******  * **

consensus_1811#0      TTGTTGTAGTGTTTCCACTTGTTGGAAAATGGCTTCTAAACTCATTTTTTCTCCAAACAG 240
consensus_1811#1      TTGCTGCAAAGTTTCCACTTGTTGGAAAATGGCTTCTACACTCATTTTTTCTCCAAAAAG 95
                      *** ** *  **************************** ****************** **

consensus_1811#0      CTTAATAAGGTTTGTTTTTACTTTTACCCACGATTCGTCTAATATGCGATGAAAGAAACC 300
consensus_1811#1      CTTTATTAAATTTAATTTAACATTCGCCCACGTATCATCTAATATGCGACTGAAAAATCC 155
                      *** ** *  ***  *** ** **  ******  ** ************   ** ** **

consensus_1811#0      AGCTGCACTACCTTTTAATTTAAACATTACGGTTCGAATTAAATCTTCCTCCGATTCACC 360
consensus_1811#1      AGCAGCATTTCCTTTTAATTTGAACATTACCGTTCTAATTAAATCCTCTTCCGATTCGCC 215
                      *** *** * *********** ******** **** ********* ** ******** **

consensus_1811#0      CGCTGGTATTTGTTTAGCAAAGAATTCAACTTGATAAAGAAATCCATCTAAATCATTTGC 420
consensus_1811#1      TCTTGGTATCTGATTCGCAAAATATTCTACTTGAAATAAAAATCCATCTAATTCCTTTGC 275
                         ****** ** ** *****  **** ****** * * ************ ** *****

consensus_1811#0      ATTTCCGTTGTATTCCGGAATACATAACATTGCCCTTTCGAGTGGAAATTCATATGCCAT 480
consensus_1811#1      AGCTCCGTGATATTCAGGAATGCATAGCATTGCCTTTTCCGTTGGGAATTCGTAAGCCAT 335
                      *  *****  ***** ***** **** ******* ****   *** ***** ** *****

consensus_1811#0      TTTGTGGATTGTAGTGTTTAATGCACGCTCGATTTCAATACTCTGGTTGAAAAAGTCTTC 540
consensus_1811#1      TTTTGAAAATGACGCGTTCAACGCTCTATCGATTTCAAGGCTTTGATTTAATAATTCTCC 395
                      ***    * **  * *** ** ** *  **********  ** ** ** ** ** *** *

consensus_1811#0      CTTAAGAATTCTGAGGTGTTCCGTATAATTATATTCTTTGTGTAGACACTGATC 594
consensus_1811#1      TTTGAGAACTTGGAGGCGTTTTTGGTAA-------------------------- 423
                       ** **** *  **** ***     ***                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)