cluster # 1813

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Anopheles gambiae
cluster # 1813 cluster # 1813 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1813#0 length = 614 sequences # 1

consensus_1813#1 length = 602 sequences # 1

consensusID : consensus_1813#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 614
fasta sequence

                              [CCGTGAATATTTGTCGATTTTGTCTCAGTGAGGACGAAAACTACTTAATTCCGGTGCAAGATGTATTAGATTTTGAGCTTACCATCGAAGATTTAGTCCGTTTCACCGGCATACAGCTCAACGATGAACACAAAGCATCCTGTGTGGTGTGTCTAGAATGTACAAACAAGCTGAAAATATCGTCCACCTTCCGGAACGCCTGCCTGAGGAACGATGCGCTCTTCCATGCCCTGTGCCGTGTTGTGCTCGACTCCCGCGTTCAACAGACCTACGATGAAACGGTCGAATATTTGGAAAGCGATTTTGAAGGGGAAGCAAACTCCGACACCTACGCCGAAGACGAACCAATCGCAACGGACATTTGTCCTAGTGAAGATGGCTCGAGTCCACTGCCAAGTGCCGTAAAAGAACTCCAGCACCGTACGCAGCCCAGTAGCGTGGTTTCGATTGCGAGCACCATCGAGGAAGCGAACAGTGAGGACGAGCTGTTTGGATATTCGGCCAACTACATCAAGCCAGGCGAAATACTGTATGCAGAGGATGTGGTGCACCGGTCGTACGTGGATTGGAACACCAGCCTCAACCCGAAGCACGCTCCCACCGCTCCCCATCCG]

[+] EMBL BM594627             [CCGTGAATATTTGTCGATTTTGTCTCAGTGAGGACGAAAACTACTTAATTCCGGTGCAAGATGTATTAGATTTTGAGCTTACCATCGAAGATTTAGTCCGTTTCACCGGCATACAGCTCAACGATGAACACAAAGCATCCTGTGTGGTGTGTCTAGAATGTACAAACAAGCTGAAAATATCGTCCACCTTCCGGAACGCCTGCCTGAGGAACGATGCGCTCTTCCATGCCCTGTGCCGTGTTGTGCTCGACTCCCGCGTTCAACAGACCTACGATGAAACGGTCGAATATTTGGAAAGCGATTTTGAAGGGGAAGCAAACTCCGACACCTACGCCGAAGACGAACCAATCGCAACGGACATTTGTCCTAGTGAAGATGGCTCGAGTCCACTGCCAAGTGCCGTAAAAGAACTCCAGCACCGTACGCAGCCCAGTAGCGTGGTTTCGATTGCGAGCACCATCGAGGAAGCGAACAGTGAGGACGAGCTGTTTGGATATTCGGCCAACTACATCAAGCCAGGCGAAATACTGTATGCAGAGGATGTGGTGCACCGGTCGTACGTGGATTGGAACACCAGCCTCAACCCGAAGCACGCTCCCACCGCTCCCCATCCG]




>consensus_1813#0
CCGTGAATATTTGTCGATTTTGTCTCAGTGAGGACGAAAACTACTTAATTCCGGTGCAAG
ATGTATTAGATTTTGAGCTTACCATCGAAGATTTAGTCCGTTTCACCGGCATACAGCTCA
ACGATGAACACAAAGCATCCTGTGTGGTGTGTCTAGAATGTACAAACAAGCTGAAAATAT
CGTCCACCTTCCGGAACGCCTGCCTGAGGAACGATGCGCTCTTCCATGCCCTGTGCCGTG
TTGTGCTCGACTCCCGCGTTCAACAGACCTACGATGAAACGGTCGAATATTTGGAAAGCG
ATTTTGAAGGGGAAGCAAACTCCGACACCTACGCCGAAGACGAACCAATCGCAACGGACA
TTTGTCCTAGTGAAGATGGCTCGAGTCCACTGCCAAGTGCCGTAAAAGAACTCCAGCACC
GTACGCAGCCCAGTAGCGTGGTTTCGATTGCGAGCACCATCGAGGAAGCGAACAGTGAGG
ACGAGCTGTTTGGATATTCGGCCAACTACATCAAGCCAGGCGAAATACTGTATGCAGAGG
ATGTGGTGCACCGGTCGTACGTGGATTGGAACACCAGCCTCAACCCGAAGCACGCTCCCA
CCGCTCCCCATCCG

consensusID : consensus_1813#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 602
fasta sequence

                              [AATNCCCGACGTTTATTTGGATATTCGGCCAACTACATCAAGCCAGGCGANATACTGTATGCAGAGGATGTGGTGCACCGGTCGTACGTGGATTGGAACACCAGGCCTCAACCGAAGCACGCTCCCACCGCTCCCCATCCGAGAGAGCGCGGAAAGCGAAGACTGTACATGTGTGAAAAGTGCGCCCTCATTGTGAAGCACCTGCCAACGCACATGCAAGTACACGAGGAGACGGCACATTCGCCTGCCCGTACTGTCCGGCCAAAATGAAGCAGAAAAACAACATCTCCCAGCACATACTACAGGTGCACTACAAGGCCATCTGCAGGACGTGCAAAATATGCGGCCAAAGGCTTCGTTCATCACAAAACGTACCGATATCATATGGTTGGGTCGTGCTAGCAGAGACAAATTGCGCCGGAATGTGCCAGTAACAATGTATGCTACTTTTTCGTTTCAGCTTACCCACGAGGGTGAAGGGAAACGGTTCGGCTGCAGGATTGCTCGAAAACGTTCCCGAACGCCATCTACTTACGCGACCATTTTAATCGAATCCACAATGCGGCTAGAACGGGGAAGACGAATGCTGATCGGGACCCAAA]

[+] EMBL AL694219             [AATNCCCGACGTTTATTTGGATATTCGGCCAACTACATCAAGCCAGGCGANATACTGTATGCAGAGGATGTGGTGCACCGGTCGTACGTGGATTGGAACACCAGGCCTCAACCGAAGCACGCTCCCACCGCTCCCCATCCGAGAGAGCGCGGAAAGCGAAGACTGTACATGTGTGAAAAGTGCGCCCTCATTGTGAAGCACCTGCCAACGCACATGCAAGTACACGAGGAGACGGCACATTCGCCTGCCCGTACTGTCCGGCCAAAATGAAGCAGAAAAACAACATCTCCCAGCACATACTACAGGTGCACTACAAGGCCATCTGCAGGACGTGCAAAATATGCGGCCAAAGGCTTCGTTCATCACAAAACGTACCGATATCATATGGTTGGGTCGTGCTAGCAGAGACAAATTGCGCCGGAATGTGCCAGTAACAATGTATGCTACTTTTTCGTTTCAGCTTACCCACGAGGGTGAAGGGAAACGGTTCGGCTGCAGGATTGCTCGAAAACGTTCCCGAACGCCATCTACTTACGCGACCATTTTAATCGAATCCACAATGCGGCTAGAACGGGGAAGACGAATGCTGATCGGGACCCAAA]




>consensus_1813#1
AATNCCCGACGTTTATTTGGATATTCGGCCAACTACATCAAGCCAGGCGANATACTGTAT
GCAGAGGATGTGGTGCACCGGTCGTACGTGGATTGGAACACCAGGCCTCAACCGAAGCAC
GCTCCCACCGCTCCCCATCCGAGAGAGCGCGGAAAGCGAAGACTGTACATGTGTGAAAAG
TGCGCCCTCATTGTGAAGCACCTGCCAACGCACATGCAAGTACACGAGGAGACGGCACAT
TCGCCTGCCCGTACTGTCCGGCCAAAATGAAGCAGAAAAACAACATCTCCCAGCACATAC
TACAGGTGCACTACAAGGCCATCTGCAGGACGTGCAAAATATGCGGCCAAAGGCTTCGTT
CATCACAAAACGTACCGATATCATATGGTTGGGTCGTGCTAGCAGAGACAAATTGCGCCG
GAATGTGCCAGTAACAATGTATGCTACTTTTTCGTTTCAGCTTACCCACGAGGGTGAAGG
GAAACGGTTCGGCTGCAGGATTGCTCGAAAACGTTCCCGAACGCCATCTACTTACGCGAC
CATTTTAATCGAATCCACAATGCGGCTAGAACGGGGAAGACGAATGCTGATCGGGACCCA
AA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1813#0      --------------CCGTGAATATTTGTCGATTTTGTCTCAGTGAGGACGAAAACTACTT 46
consensus_1813#1      AATNCCCGACGTTTATTTGGATATTCGGCCAACTACATCAAGCCAGGCGANATACTGTAT 60
                                       ** ***** * * *  *      **  ***    * ***   *

consensus_1813#0      A-----ATTCCGGTGCA--AGATGTATTAGATTTTGAGCTTACCATCGAAGATTTAGTCC 99
consensus_1813#1      GCAGAGGATGTGGTGCACCGGTCGTACGTGGATTGGAACACCAGGCCTCAACCGAAGCAC 120
                              *  ******   *  ***   *  ** ** *       *  *     **  *

consensus_1813#0      GTTTCACCGGCATACAGCTCAACGATGAACACAAAGCATCCTGTGTG-GTGTGTCTAGAA 158
consensus_1813#1      GCTCCCACCGCTCCCCATCCGAGAGAGCGCGGAAAGCGAAGACTGTACATGTGTGAAAAG 180
                      * * *  * **   *    * *    *  *  *****      ***   *****  * * 

consensus_1813#0      TGTACAAACAAGCTGAAAATATCGTCCACCTTCCGGAACGCCTGCCTGAGGA-ACGATGC 217
consensus_1813#1      TGCGCCCTCATTGTGAAGCACCTGCCAACGCACATGCAAG--TACACGAGGAGACGGCAC 238
                      **  *   **   ****      * * **   *  * * *  * *  ***** ***   *

consensus_1813#0      GCTCTTCCATGCCCTGTGCCGTGTTGTGCTCGACTCCCGCGTTCAACAGACCTACGATGA 277
consensus_1813#1      ATTCGCCTGCCCGTACTGTCCGGCCAAAAT-GAAGCAGAAAAACAACATCTCCCAGCACA 297
                        **  *    *    ** *  *      * **  *       *****   *   *   *

consensus_1813#0      AACGGTCGAATATTTGGAAAGCGATTTTGAAGGGGAAGCAAACTCCGACACCTACGCCGA 337
consensus_1813#1      TACTACAGGTGCACTACAAGGCCATCT-GCAGGACGTGCAAAATATGCGGCCAA-----A 351
                       **    *      *  ** ** ** * * ***    ***** *  *   ** *     *

consensus_1813#0      AGACGAACCAATCGCAACGGACATTTGTCCTAGTGAAGATGGCTCGAGTC--CACTGCCA 395
consensus_1813#1      GGCTTCGTTCATCACAAAACGTACCGATATCA-TATGGTTGGGTCGTGCTAGCAGAGACA 410
                       *        *** ***     *    *   * *   * *** *** *    **  * **

consensus_1813#0      AGTGCCGTAAAAGAACTCCAGCACCGTACGCAGCCCAGTAGCGTGGTTTCGATTGCGAGC 455
consensus_1813#1      AATTGCGCCGGAATGTGCCAGTAACA-ATGTATGCTACTTTTTCGTTTCAGCTTACC--C 467
                      * *  **    *     **** * *  * * *  * * *     * **  * ** *   *

consensus_1813#0      ACCATCGAGGAAGCGAACAGTGAGGACG---AGCTGTTTGGATATTCGGCC-AACTACAT 511
consensus_1813#1      ACGAGGGTGAAGGGAAACGGTTCGGCTGCAGGATTGCTCGAAAACGTTCCCGAACGCCAT 527
                      ** *  * * * *  *** **  **  *      ** * * * *     ** ***  ***

consensus_1813#0      CAAGCCAGGCGAAATACTGTATGCAGAGGATGTGGTGCACCGGTCGTACGTGGATTG-GA 570
consensus_1813#1      CTACTTACGCGA----CCATTTTAATCGAATCCACAATGCGGCTAGAACGGGGAAGACGA 583
                      * *   * ****    *  * *  *  * **        * * * * *** ***    **

consensus_1813#0      ACACCAGCCTCAACCCGAAGCACGCTCCCACCGCTCCCCATCCG 614
consensus_1813#1      ATGCTGATCGGGACCCAAA------------------------- 602
                      *  *    *   **** **