These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1818#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence [CAGCAATGCTGCCGAGCGCAAAATTGGTACGAAAAAATACACTTCTAGGCCTAATATTGAGTGAAATGAAACATCCTAACGTTGTCGTTTTTAGGTTGCGCATCTTGCCTTGGCGAGACGATGCGTGCACACTACAGCAAGCGTGGCAAAGTCACAGTCAGGTCGGTACAAGATATCGCCAAAAGGGGACCGTCCTCTTACGTATGAAATGGCAAATCCTCCGCATCAGATAGCGCATCGGAAAGCATGGAACTCGTGGAACACTTCCAATCTAGAAGGTGAACTGCGCCCATCGCAAACCATGCTGGAGGACGATTTCATTCGCCGGTTCATGGCGGGCACCTGGCACGGTCTGGTGTTGTCCGAAGTAATCATCAAGCGGCAGCACAATCATGTGCGTATAGCAGCGATCATTAGCCGGTCAATTCCGGCAAGGAAAATGTACTTCCTGATTGGGTACTGCGAGGAGCTGCTCGCGTACTGGTTGCAGTGTCCGGTTACGCTCGAGCTGCAGACCACCGATGATAGGAAGGATGTAATCTTTAAGTACATCTAAATGGCCCAAATGCATTTTTGCGCACTGTTAGTATAATAGGCCACAACACACGGATGCATGATTGTAGCATGTAAATAAGATAAAAGAAGACTAAATACTACGAAAAAGGCACACAACAGGAGATATTT] [+] EMBL BX621560 [CAGCAATGCTGCCGAGCGCAAAATTGGTACGAAAAAATACACTTCTAGGCCTAATATTGAGTGAAATGAAACATCCTAACGTTGTCGTTTTTAGGTTGCGCATCTTGCCTTGGCGAGACGATGCGTGCACACTACAGCAAGCGTGGCAAAGTCACAGTCAGGTCGGTACAAGATATCGCCAAAAGGGGACCGTCCTCTTACGTATGAAATGGCAAATCCTCCGCATCAGATAGCGCATCGGAAAGCATGGAACTCGTGGAACACTTCCAATCTAGAAGGTGAACTGCGCCCATCGCAAACCATGCTGGAGGACGATTTCATTCGCCGGTTCATGGCGGGCACCTGGCACGGTCTGGTGTTGTCCGAAGTAATCATCAAGCGGCAGCACAATCATGTGCGTATAGCAGCGATCATTAGCCGGTCAATTCCGGCAAGGAAAATGTACTTCCTGATTGGGTACTGCGAGGAGCTGCTCGCGTACTGGTTGCAGTGTCCGGTTACGCTCGAGCTGCAGACCACCGATGATAGGAAGGATGTAATCTTTAAGTACATCTAAATGGCCCAAATGCATTTTTGCGCACTGTTAGTATAATAGGCCACAACACACGGATGCATGATTGTAGCATGTAAATAAGATAAAAGAAGACTAAATACTACGAAAAAGGCACACAACAGGAGATATTT] consensusID : consensus_1818#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence [CCGCGAAAAGATCAGCAATGCTGCCGAGCGCAAAATTGGTTGCGCATCTTGCCTTGGCGAGACGATGCGTGCACACTACAGCAAGCGTGGCAAAGTCACAGTCAGGTCGGTACAAGATATCGCCAAAAGGGGACCGTCCTCTTACGTATGAAATGGCAAATCCTCCGCATCAGATAGCGCATCGGAAAGCATGGAACTCGTGGAACACTTCCAATCTAGAAGGTGAACTGCGCCCATCGCAAACCATGCTGGAGGACGATTTCATTCGCCGGTTCATGGCGGGCACCTGGCACGGTCTGGTGTTGTCCGAAGTAATCATCAAGCGGCAGCACAATCATGTGCGTATAGCAGCGATCATTAGCCGGTCAATTCCGGCAAGGAAAATGTACTTCCTGATTGGGTACTGCGAGGAGCTGCTCGCGTACTGGTTGCAGTGTCCGGTTACGCTCGAGCTGCAGACCACCGATGATAGGAAGGATGTAATCTTTAAGTACATCTAAATGGCCCAAATGCATTTTTGCGCACTGTTAGTATAATAGGCCACAACACACGGATGCATGATTGTAGCATGTAAATAAGATAAAAGAAGACTAAATACTACGAAAAAGGCACAC] [+] EMBL BM582391 [CCGCGAAAAGATCAGCAATGCTGCCGAGCGCAAAATTGGTTGCGCATCTTGCCTTGGCGAGACGATGCGTGCACACTACAGCAAGCGTGGCAAAGTCACAGTCAGGTCGGTACAAGATATCGCCAAAAGGGGACCGTCCTCTTACGTATGAAATGGCAAATCCTCCGCATCAGATAGCGCATCGGAAAGCATGGAACTCGTGGAACACTTCCAATCTAGAAGGTGAACTGCGCCCATCGCAAACCATGCTGGAGGACGATTTCATTCGCCGGTTCATGGCGGGCACCTGGCACGGTCTGGTGTTGTCCGAAGTAATCATCAAGCGGCAGCACAATCATGTGCGTATAGCAGCGATCATTAGCCGGTCAATTCCGGCAAGGAAAATGTACTTCCTGATTGGGTACTGCGAGGAGCTGCTCGCGTACTGGTTGCAGTGTCCGGTTACGCTCGAGCTGCAGACCACCGATGATAGGAAGGATGTAATCTTTAAGTACATCTAAATGGCCCAAATGCATTTTTGCGCACTGTTAGTATAATAGGCCACAACACACGGATGCATGATTGTAGCATGTAAATAAGATAAAAGAAGACTAAATACTACGAAAAAGGCACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1818#0 CAGCAATGCTGCCGAGCGCAAAATTGGTACGAAAAAATACACTTCTAGGCCTAATATTGA 60 consensus_1818#1 --------------------------------------------------------CCGC 4 * consensus_1818#0 GTGAA-ATGAAACATCCTAACGTTGTCGTTTTTAGGTTGCGCATCTTGCCTTGGCGAGAC 119 consensus_1818#1 GAAAAGATCAGCAATGCTGCCGAGCGCAAAATT-GGTTGCGCATCTTGCCTTGGCGAGAC 63 * ** ** * ** ** ** * ** ************************** consensus_1818#0 GATGCGTGCACACTACAGCAAGCGTGGCAAAGTCACAGTCAGGTCGGTACAAGATATCGC 179 consensus_1818#1 GATGCGTGCACACTACAGCAAGCGTGGCAAAGTCACAGTCAGGTCGGTACAAGATATCGC 123 ************************************************************ consensus_1818#0 CAAAAGGGGACCGTCCTCTTACGTATGAAATGGCAAATCCTCCGCATCAGATAGCGCATC 239 consensus_1818#1 CAAAAGGGGACCGTCCTCTTACGTATGAAATGGCAAATCCTCCGCATCAGATAGCGCATC 183 ************************************************************ consensus_1818#0 GGAAAGCATGGAACTCGTGGAACACTTCCAATCTAGAAGGTGAACTGCGCCCATCGCAAA 299 consensus_1818#1 GGAAAGCATGGAACTCGTGGAACACTTCCAATCTAGAAGGTGAACTGCGCCCATCGCAAA 243 ************************************************************ consensus_1818#0 CCATGCTGGAGGACGATTTCATTCGCCGGTTCATGGCGGGCACCTGGCACGGTCTGGTGT 359 consensus_1818#1 CCATGCTGGAGGACGATTTCATTCGCCGGTTCATGGCGGGCACCTGGCACGGTCTGGTGT 303 ************************************************************ consensus_1818#0 TGTCCGAAGTAATCATCAAGCGGCAGCACAATCATGTGCGTATAGCAGCGATCATTAGCC 419 consensus_1818#1 TGTCCGAAGTAATCATCAAGCGGCAGCACAATCATGTGCGTATAGCAGCGATCATTAGCC 363 ************************************************************ consensus_1818#0 GGTCAATTCCGGCAAGGAAAATGTACTTCCTGATTGGGTACTGCGAGGAGCTGCTCGCGT 479 consensus_1818#1 GGTCAATTCCGGCAAGGAAAATGTACTTCCTGATTGGGTACTGCGAGGAGCTGCTCGCGT 423 ************************************************************ consensus_1818#0 ACTGGTTGCAGTGTCCGGTTACGCTCGAGCTGCAGACCACCGATGATAGGAAGGATGTAA 539 consensus_1818#1 ACTGGTTGCAGTGTCCGGTTACGCTCGAGCTGCAGACCACCGATGATAGGAAGGATGTAA 483 ************************************************************ consensus_1818#0 TCTTTAAGTACATCTAAATGGCCCAAATGCATTTTTGCGCACTGTTAGTATAATAGGCCA 599 consensus_1818#1 TCTTTAAGTACATCTAAATGGCCCAAATGCATTTTTGCGCACTGTTAGTATAATAGGCCA 543 ************************************************************ consensus_1818#0 CAACACACGGATGCATGATTGTAGCATGTAAATAAGATAAAAGAAGACTAAATACTACGA 659 consensus_1818#1 CAACACACGGATGCATGATTGTAGCATGTAAATAAGATAAAAGAAGACTAAATACTACGA 603 ************************************************************ consensus_1818#0 AAAAGGCACACAACAGGAGATATTT 684 consensus_1818#1 AAAAGGCACAC-------------- 614 *********** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||