These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1844#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [ACAAAGTTCCGATTCCGAATGGGGGTTCAAAATAAAGAGGAGATCCTACCGGCGTTCGGTAGGAGAGATGGTAGACGAAGCAAAGAAGCTAAAGCGTTGCTATGGTGAAAAGCTTTCATTTTTTTTAAATTAAAATTACATACTTGCTGCTACTAAGACTAAGTTCATTCCGTTTCCATACACAGTGGGGTGTGGTTTTAGTTTGCTCATGTTCAAACAATCAATAGTAAAAAAACAATTGTTTACATCACTTCTCAGTGTTCACAAATCATGTAAAGGTATATAAAAGGGGATGTGGATAACAAACGAACGAATAGAAACGTGAAACCTTAATATCTAGTATTTTTACATACATTGCTTCTCTCAGGCAGATGGAAAAGGTCGTGTAAAAGGAAACAATCATAACTTGTTTTTTTTTTTTTTTGGGAATGTGCTTCAATTTTTTGAGTGTTTTTTATGTTTTAAAATACATTTTCTACATTTTTTGTCTTCTTAAAATAAAGAATAACAAGGAACGGTTAGCAAATGGTAACAGTAAAGAGCATAGTAGGCGGCGAGAAGCATTTAGAAAAGTAATGTAAACTAATGTCGAAGCTGTAGCTGTTTCTTTCAACTCTAGCAAATGCAAATGGGTTAGAGACAAAAACACCAAATCCACAAGAAAAATCGTGTTTAAAGAGGAAAGGATTGGA] [+] EMBL BX610296 [ACAAAGTTCCGATTCCGAATGGGGGTTCAAAATAAAGAGGAGATCCTACCGGCGTTCGGTAGGAGAGATGGTAGACGAAGCAAAGAAGCTAAAGCGTTGCTATGGTGAAAAGCTTTCATTTTTTTTAAATTAAAATTACATACTTGCTGCTACTAAGACTAAGTTCATTCCGTTTCCATACACAGTGGGGTGTGGTTTTAGTTTGCTCATGTTCAAACAATCAATAGTAAAAAAACAATTGTTTACATCACTTCTCAGTGTTCACAAATCATGTAAAGGTATATAAAAGGGGATGTGGATAACAAACGAACGAATAGAAACGTGAAACCTTAATATCTAGTATTTTTACATACATTGCTTCTCTCAGGCAGATGGAAAAGGTCGTGTAAAAGGAAACAATCATAACTTGTTTTTTTTTTTTTTTGGGAATGTGCTTCAATTTTTTGAGTGTTTTTTATGTTTTAAAATACATTTTCTACATTTTTTGTCTTCTTAAAATAAAGAATAACAAGGAACGGTTAGCAAATGGTAACAGTAAAGAGCATAGTAGGCGGCGAGAAGCATTTAGAAAAGTAATGTAAACTAATGTCGAAGCTGTAGCTGTTTCTTTCAACTCTAGCAAATGCAAATGGGTTAGAGACAAAAACACCAAATCCACAAGAAAAATCGTGTTTAAAGAGGAAAGGATTGGA] consensusID : consensus_1844#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [CCCGAGTTGACACTATGAGACACTGGAAAACTGTACACTCTGGTACGTAAAAATCAAAGCAATTATAGTTCGCAATTAATTGTGACATTTAACAGCAGCAGCTCACATTTATGAAGCATAAATTTTGCCTTACTTACAAAGTTCCGATTCCGAATGGGGTTTAAAATAAAGCGGAGATTGTGACGAACGCCGGGAGAGTTGGCAGAGAAAGCAAAGAAGCTAAAGCGTGCTATGGTGAAAAGCTTTCTTTTTTTTTTAAATTAAAATTACATACTTGCTGCTACTAAGACTAAGTTCATTCCGTTTCCATACACAGTGGGGTGTGGTTTTGTTTGCTCATGTTCAAACAATCAATAGTAAAAAACAATTGTTTACATCACTTCTCAGTGTTCACAAATCATGTANAGGTATATAAACAGGGGATGTGGATAACAAATGAACGAATAGAAACGTGAAACTTTATATCTAGTATTCNCNCTACATACATTGCTTTNTCTCAGGCAGATGGCAACACNGGTCGTGTCACAAGGAAACAATCATAACTCTGTCC] [+] EMBL AL694380 [CCCGAGTTGACACTATGAGACACTGGAAAACTGTACACTCTGGTACGTAAAAATCAAAGCAATTATAGTTCGCAATTAATTGTGACATTTAACAGCAGCAGCTCACATTTATGAAGCATAAATTTTGCCTTACTTACAAAGTTCCGATTCCGAATGGGGTTTAAAATAAAGCGGAGATTGTGACGAACGCCGGGAGAGTTGGCAGAGAAAGCAAAGAAGCTAAAGCGTGCTATGGTGAAAAGCTTTCTTTTTTTTTTAAATTAAAATTACATACTTGCTGCTACTAAGACTAAGTTCATTCCGTTTCCATACACAGTGGGGTGTGGTTTTGTTTGCTCATGTTCAAACAATCAATAGTAAAAAACAATTGTTTACATCACTTCTCAGTGTTCACAAATCATGTANAGGTATATAAACAGGGGATGTGGATAACAAATGAACGAATAGAAACGTGAAACTTTATATCTAGTATTCNCNCTACATACATTGCTTTNTCTCAGGCAGATGGCAACACNGGTCGTGTCACAAGGAAACAATCATAACTCTGTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1844#0 ------------------------------------------------------------ consensus_1844#1 CCCGAGTTGACACTATGAGACACTGGAAAACTGTACACTCTGGTACGTAAAAATCAAAGC 60 consensus_1844#0 ------------------------------------------------------------ consensus_1844#1 AATTATAGTTCGCAATTAATTGTGACATTTAACAGCAGCAGCTCACATTTATGAAGCATA 120 consensus_1844#0 ---------------ACAAAGTTCCGATTCCGAATGGGGGTTCAAAATAAAGAGGAGATC 45 consensus_1844#1 AATTTTGCCTTACTTACAAAGTTCCGATTCCGAATGGGG-TTTAAAATAAAGCGGAGATT 179 ************************ ** ********* ****** consensus_1844#0 CTACCGGCGTTCGGTAGGAGAGATGGTAGACGAAGCAAAGAAGCTAAAGCGTTGCTATGG 105 consensus_1844#1 GT---GACGAACGCCGGGAGAGTTGGCAGAGAAAGCAAAGAAGCTAAAGCGT-GCTATGG 235 * * ** ** ****** *** *** ******************** ******* consensus_1844#0 TGAAAAGCTTTCATTTTTTTT-AAATTAAAATTACATACTTGCTGCTACTAAGACTAAGT 164 consensus_1844#1 TGAAAAGCTTTCTTTTTTTTTTAAATTAAAATTACATACTTGCTGCTACTAAGACTAAGT 295 ************ ******** ************************************** consensus_1844#0 TCATTCCGTTTCCATACACAGTGGGGTGTGGTTTTAGTTTGCTCATGTTCAAACAATCAA 224 consensus_1844#1 TCATTCCGTTTCCATACACAGTGGGGTGTGGTTTT-GTTTGCTCATGTTCAAACAATCAA 354 *********************************** ************************ consensus_1844#0 TAGTAAAAAAACAATTGTTTACATCACTTCTCAGTGTTCACAAATCATGTAAAGGTATAT 284 consensus_1844#1 TAGTAAAAAA-CAATTGTTTACATCACTTCTCAGTGTTCACAAATCATGTANAGGTATAT 413 ********** **************************************** ******** consensus_1844#0 AAA-AGGGGATGTGGATAACAAACGAACGAATAGAAACGTGAAACCTTAATATCTAGTAT 343 consensus_1844#1 AAACAGGGGATGTGGATAACAAATGAACGAATAGAAACGTGAAACTTTA-TATCTAGTAT 472 *** ******************* ********************* *** ********** consensus_1844#0 TTT---TACATACATTGCTT-CTCTCAGGCAGATGGAAA---AGGTCGTGTAA-AAGGAA 395 consensus_1844#1 TCNCNCTACATACATTGCTTTNTCTCAGGCAGATGGCAACACNGGTCGTGTCACAAGGAA 532 * ************** ************** ** ******** * ****** consensus_1844#0 ACAATCATAACTTGTTTTTTTTTTTTTTTGGGAATGTGCTTCAATTTTTTGAGTGTTTTT 455 consensus_1844#1 ACAATCATAACTCTGTCC------------------------------------------ 550 ************ * consensus_1844#0 TATGTTTTAAAATACATTTTCTACATTTTTTGTCTTCTTAAAATAAAGAATAACAAGGAA 515 consensus_1844#1 ------------------------------------------------------------ consensus_1844#0 CGGTTAGCAAATGGTAACAGTAAAGAGCATAGTAGGCGGCGAGAAGCATTTAGAAAAGTA 575 consensus_1844#1 ------------------------------------------------------------ consensus_1844#0 ATGTAAACTAATGTCGAAGCTGTAGCTGTTTCTTTCAACTCTAGCAAATGCAAATGGGTT 635 consensus_1844#1 ------------------------------------------------------------ consensus_1844#0 AGAGACAAAAACACCAAATCCACAAGAAAAATCGTGTTTAAAGAGGAAAGGATTGGA 692 consensus_1844#1 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||