These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1863#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence [CCGAGCAGATGGAGGCGCGAAAAGGGCTGTCTCGTTGCATCAAACAGCCAAGCAGCAAACAATCAAACCGTCCCTTTGGGCTTCTCTTGTTGCTTGTTCCAATTTAAAACAAAAATGGCAAAAATCAATTTGAAGCTAAGCTCGAAGGACGTGGAAACCAGCCTCCAGGACGGCTCCATCAAGCTGCAGTACATTCCCGCCACGATCAAGGGCGACGGGCCGGCGAATCTGGAGCAGTTTTTCACCCCGTACACGGAAACGCAACGGGACGGAACTCTGTGCAATGCGCTTCGGGGATATCCGCTGCGCGGCAAAGCAACGTCCCTGCCGGCCGGCTACACGGGCGTGATGCTGCAAGAAACGAAAAAGCCACTCTCGGACGAGGACGATCGAACGCTAACGTTTGCCGGTGCGTTCCGCGACTTTACCTACTGGAACTACGATCGCCAGCCGTCCCGGAACGATCCGATGGCGAAGGCACTGGGCTGGCTGCAGCTGGCGGAGGTGCTGCATGGCGATGAGCCCGATGATGGCACCGAGCAGGACGTGAAGC] [+] EMBL BM604184 [CCGAGCAGATGGAGGCGCGAAAAGGGCTGTCTCGTTGCATCAAACAGCCAAGCAGCAAACAATCAAACCGTCCCTTTGGGCTTCTCTTGTTGCTTGTTCCAATTTAAAACAAAAATGGCAAAAATCAATTTGAAGCTAAGCTCGAAGGACGTGGAAACCAGCCTCCAGGACGGCTCCATCAAGCTGCAGTACATTCCCGCCACGATCAAGGGCGACGGGCCGGCGAATCTGGAGCAGTTTTTCACCCCGTACACGGAAACGCAACGGGACGGAACTCTGTGCAATGCGCTTCGGGGATATCCGCTGCGCGGCAAAGCAACGTCCCTGCCGGCCGGCTACACGGGCGTGATGCTGCAAGAAACGAAAAAGCCACTCTCGGACGAGGACGATCGAACGCTAACGTTTGCCGGTGCGTTCCGCGACTTTACCTACTGGAACTACGATCGCCAGCCGTCCCGGAACGATCCGATGGCGAAGGCACTGGGCTGGCTGCAGCTGGCGGAGGTGCTGCATGGCGATGAGCCCGATGATGGCACCGAGCAGGACGTGAAGC] consensusID : consensus_1863#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 539 fasta sequence [AATCGGCACGAGGTNNTAATGGGCCGTCCCGCTCTCGCACGCACGGCGCTGCTACGGTTGATTCGGTGTTTACCATCCGTCCGTCAAACTGGGCCTGCTGTTGTTCCTCTTCCTTCTGTCAAACCGTTTAAAAATAAAATTCAAACCTGCTGAAGCCCCGCGTGACAGCAAGACAGAAAGCAGATGGAGGCGCGAAAAGGGCTGTCTCGGTTGCATCAAACAGGCCAAAAGCAGCAAACAAGTCAAAGCTTTCGTCCCTTTGGGCTGCACTTTTTGCTTGTTCCAACTTTTAAGAACAAANAACTGGCAAAAATCAATTTGAAGCTAAGCTCGAAGTGACGTGGAAACCAGCCTCCAGGACGGNTCCATCAAGCTGCAGTACATTCCCGCCACGATCAAGGGCGACGGGCCGGCGGAATCTGGAGCAGNTTTTTCACACCGGTACACGGAAACGGCAACGGGACGGAACTCTGTGCAAATGACGCTTCGGGGATATCCGATGCGCGGCAAAGCAAGCGTACCCGTGACCGGGCCGGCAT] [+] EMBL BX469360 [AATCGGCACGAGGTNNTAATGGGCCGTCCCGCTCTCGCACGCACGGCGCTGCTACGGTTGATTCGGTGTTTACCATCCGTCCGTCAAACTGGGCCTGCTGTTGTTCCTCTTCCTTCTGTCAAACCGTTTAAAAATAAAATTCAAACCTGCTGAAGCCCCGCGTGACAGCAAGACAGAAAGCAGATGGAGGCGCGAAAAGGGCTGTCTCGGTTGCATCAAACAGGCCAAAAGCAGCAAACAAGTCAAAGCTTTCGTCCCTTTGGGCTGCACTTTTTGCTTGTTCCAACTTTTAAGAACAAANAACTGGCAAAAATCAATTTGAAGCTAAGCTCGAAGTGACGTGGAAACCAGCCTCCAGGACGGNTCCATCAAGCTGCAGTACATTCCCGCCACGATCAAGGGCGACGGGCCGGCGGAATCTGGAGCAGNTTTTTCACACCGGTACACGGAAACGGCAACGGGACGGAACTCTGTGCAAATGACGCTTCGGGGATATCCGATGCGCGGCAAAGCAAGCGTACCCGTGACCGGGCCGGCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1863#0 ------------------------------------------------------------ consensus_1863#1 AATCGGCACGAGGTNNTAATGGGCCGTCCCGCTCTCGCACGCACGGCGCTGCTACGGTTG 60 consensus_1863#0 ------------------------------------------------------------ consensus_1863#1 ATTCGGTGTTTACCATCCGTCCGTCAAACTGGGCCTGCTGTTGTTCCTCTTCCTTCTGTC 120 consensus_1863#0 -------------------------------------------------------CCGAG 5 consensus_1863#1 AAACCGTTTAAAAATAAAATTCAAACCTGCTGAAGCCCCGCGTGACAGCAAGACAGAAAG 180 ** consensus_1863#0 CAGATGGAGGCGCGAAAAGGGCTGTCTCG-TTGCATCAAACAGCC---AAGCAGCAAACA 61 consensus_1863#1 CAGATGGAGGCGCGAAAAGGGCTGTCTCGGTTGCATCAAACAGGCCAAAAGCAGCAAACA 240 ***************************** ************* * ************ consensus_1863#0 A-TCAAA----CCGTCCCTTTGGGCTTCTCTTGTTGCTTGTTCCAATTT---AAAACAAA 113 consensus_1863#1 AGTCAAAGCTTTCGTCCCTTTGGGCTGCACTTTTTGCTTGTTCCAACTTTTAAGAACAAA 300 * ***** ************** * *** ************* ** * ****** consensus_1863#0 AA--TGGCAAAAATCAATTTGAAGCTAAGCTCGAAG-GACGTGGAAACCAGCCTCCAGGA 170 consensus_1863#1 NAACTGGCAAAAATCAATTTGAAGCTAAGCTCGAAGTGACGTGGAAACCAGCCTCCAGGA 360 * ******************************** *********************** consensus_1863#0 CGGCTCCATCAAGCTGCAGTACATTCCCGCCACGATCAAGGGCGACGGGCCGGCG-AATC 229 consensus_1863#1 CGGNTCCATCAAGCTGCAGTACATTCCCGCCACGATCAAGGGCGACGGGCCGGCGGAATC 420 *** *************************************************** **** consensus_1863#0 TGGAGCAGTTTTT-CACCCCG-TACACGGAAACG-CAACGGGACGGAACTCTGTGCAAT- 285 consensus_1863#1 TGGAGCAGNTTTTTCACACCGGTACACGGAAACGGCAACGGGACGGAACTCTGTGCAAAT 480 ******** **** *** *** ************ *********************** consensus_1863#0 -GCGCTTCGGGGATATCCGCTGCGCGGCAAAGCAA-CGTCCCTGCCGGCCGGCTACACGG 343 consensus_1863#1 GACGCTTCGGGGATATCCGATGCGCGGCAAAGCAAGCGTACCCGT-GACCGG----GCCG 535 ***************** *************** *** ** * * **** * * consensus_1863#0 GCGTGATGCTGCAAGAAACGAAAAAGCCACTCTCGGACGAGGACGATCGAACGCTAACGT 403 consensus_1863#1 GCAT-------------------------------------------------------- 539 ** * consensus_1863#0 TTGCCGGTGCGTTCCGCGACTTTACCTACTGGAACTACGATCGCCAGCCGTCCCGGAACG 463 consensus_1863#1 ------------------------------------------------------------ consensus_1863#0 ATCCGATGGCGAAGGCACTGGGCTGGCTGCAGCTGGCGGAGGTGCTGCATGGCGATGAGC 523 consensus_1863#1 ------------------------------------------------------------ consensus_1863#0 CCGATGATGGCACCGAGCAGGACGTGAAGC 553 consensus_1863#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||