cluster # 1865

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Anopheles gambiae
cluster # 1865 cluster # 1865 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1865#0 length = 632 sequences # 1

consensus_1865#1 length = 312 sequences # 1

consensusID : consensus_1865#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 632
fasta sequence

                              [ATCCCCCCGACGGTTATGCCTGTTTTTTTTTTTTTTTCTTTTTTTGGTAAGTAATGCCTGGTGCAGAACTTCTCGTAAGTAGTTTTTTGTGTGGTTTGTTGATAGCGCCCGCAAATGCACTGGCGCCCCAATTAAAAATACCGAGGAGGTACACGACCGTTTGCGTGCAGCGCAAAGTAGCAAAATTGCAATCCTTAAATGACAAATACCTATGAAATAGCGCGCCTCCCGTAAGAAGGCTATATACAATCATTGCAAAGATCGTGCATCGTTCGACCCAGGTCCATTATCTCATTTTCTCATTGTTTGCCTGTTTTGTTTTTGCTTCTTTTTTTTTAATACCTAAAATGCAGCACATTTGCTTGCGTGTATGTGTAATTATGTACAATCATTACCGAAAACATCCAAATAAATGCTGTATAGTATGTTCTCTCAAATTGCAGCGCCATTTACACATTGCGGGGAGACGGGGGAAAAAATTACTCCCCCCNCCCACCCCCTCACAATCTCTCTCTCTCTCTCTTCCCCCATTTTTCCGCGGCGGGGGTGATGGGTGCATCGTAAATCAATAGGCAATAGGATGAAATAAAGTCAAAGAGAGCCAGAGACAGACAGAGAGAGAGAGAAAAACG]

[+] EMBL AL694461             [ATCCCCCCGACGGTTATGCCTGTTTTTTTTTTTTTTTCTTTTTTTGGTAAGTAATGCCTGGTGCAGAACTTCTCGTAAGTAGTTTTTTGTGTGGTTTGTTGATAGCGCCCGCAAATGCACTGGCGCCCCAATTAAAAATACCGAGGAGGTACACGACCGTTTGCGTGCAGCGCAAAGTAGCAAAATTGCAATCCTTAAATGACAAATACCTATGAAATAGCGCGCCTCCCGTAAGAAGGCTATATACAATCATTGCAAAGATCGTGCATCGTTCGACCCAGGTCCATTATCTCATTTTCTCATTGTTTGCCTGTTTTGTTTTTGCTTCTTTTTTTTTAATACCTAAAATGCAGCACATTTGCTTGCGTGTATGTGTAATTATGTACAATCATTACCGAAAACATCCAAATAAATGCTGTATAGTATGTTCTCTCAAATTGCAGCGCCATTTACACATTGCGGGGAGACGGGGGAAAAAATTACTCCCCCCNCCCACCCCCTCACAATCTCTCTCTCTCTCTCTTCCCCCATTTTTCCGCGGCGGGGGTGATGGGTGCATCGTAAATCAATAGGCAATAGGATGAAATAAAGTCAAAGAGAGCCAGAGACAGACAGAGAGAGAGAGAAAAACG]




>consensus_1865#0
ATCCCCCCGACGGTTATGCCTGTTTTTTTTTTTTTTTCTTTTTTTGGTAAGTAATGCCTG
GTGCAGAACTTCTCGTAAGTAGTTTTTTGTGTGGTTTGTTGATAGCGCCCGCAAATGCAC
TGGCGCCCCAATTAAAAATACCGAGGAGGTACACGACCGTTTGCGTGCAGCGCAAAGTAG
CAAAATTGCAATCCTTAAATGACAAATACCTATGAAATAGCGCGCCTCCCGTAAGAAGGC
TATATACAATCATTGCAAAGATCGTGCATCGTTCGACCCAGGTCCATTATCTCATTTTCT
CATTGTTTGCCTGTTTTGTTTTTGCTTCTTTTTTTTTAATACCTAAAATGCAGCACATTT
GCTTGCGTGTATGTGTAATTATGTACAATCATTACCGAAAACATCCAAATAAATGCTGTA
TAGTATGTTCTCTCAAATTGCAGCGCCATTTACACATTGCGGGGAGACGGGGGAAAAAAT
TACTCCCCCCNCCCACCCCCTCACAATCTCTCTCTCTCTCTCTTCCCCCATTTTTCCGCG
GCGGGGGTGATGGGTGCATCGTAAATCAATAGGCAATAGGATGAAATAAAGTCAAAGAGA
GCCAGAGACAGACAGAGAGAGAGAGAAAAACG

consensusID : consensus_1865#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 312
fasta sequence

                              [GTTATGCCTAGTGCAGAACTTCTCGTAAGTAGTTTTTTGTGTGGTTTGTTGATAGCGCCCGCAAATGCACTGGCGCCCCAATTAAAAATACCGAAGAGGTACACGACCGTTTGCGTGCAGCGCAAAGTAGCAAAATCGCGCGCATGTGCGCGCTGCAATCCTTAAATGACAAATACCTATGAAATAGCGCGCCTCCCGTAAGAAGGCTATATACAATCATTGCAAAGATCGTGCATCGTTCGCACCCAGCTCCATTATCTCATTTTCTCATTGTTTGCCTGTTTTTGTTTTTTGCTTCTTTTTTTTAATACC]

[-] EMBL BX624379             [GTTATGCCTAGTGCAGAACTTCTCGTAAGTAGTTTTTTGTGTGGTTTGTTGATAGCGCCCGCAAATGCACTGGCGCCCCAATTAAAAATACCGAAGAGGTACACGACCGTTTGCGTGCAGCGCAAAGTAGCAAAATCGCGCGCATGTGCGCGCTGCAATCCTTAAATGACAAATACCTATGAAATAGCGCGCCTCCCGTAAGAAGGCTATATACAATCATTGCAAAGATCGTGCATCGTTCGCACCCAGCTCCATTATCTCATTTTCTCATTGTTTGCCTGTTTTTGTTTTTTGCTTCTTTTTTTTAATACC]




>consensus_1865#1
GTTATGCCTAGTGCAGAACTTCTCGTAAGTAGTTTTTTGTGTGGTTTGTTGATAGCGCCC
GCAAATGCACTGGCGCCCCAATTAAAAATACCGAAGAGGTACACGACCGTTTGCGTGCAG
CGCAAAGTAGCAAAATCGCGCGCATGTGCGCGCTGCAATCCTTAAATGACAAATACCTAT
GAAATAGCGCGCCTCCCGTAAGAAGGCTATATACAATCATTGCAAAGATCGTGCATCGTT
CGCACCCAGCTCCATTATCTCATTTTCTCATTGTTTGCCTGTTTTTGTTTTTTGCTTCTT
TTTTTTAATACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1865#0      ATCCCCCCGACGGTTATGCCTGTTTTTTTTTTTTTTTCTTTTTTTGGTAAGTAATGCCTG 60
consensus_1865#1      --------------------------------------------------GTTATGCCTA 10
                                                                        ** ****** 

consensus_1865#0      GTGCAGAACTTCTCGTAAGTAGTTTTTTGTGTGGTTTGTTGATAGCGCCCGCAAATGCAC 120
consensus_1865#1      GTGCAGAACTTCTCGTAAGTAGTTTTTTGTGTGGTTTGTTGATAGCGCCCGCAAATGCAC 70
                      ************************************************************

consensus_1865#0      TGGCGCCCCAATTAAAAATACCGAGGAGGTACACGACCGTTTGCGTGCAGCGCAAAGTAG 180
consensus_1865#1      TGGCGCCCCAATTAAAAATACCGAAGAGGTACACGACCGTTTGCGTGCAGCGCAAAGTAG 130
                      ************************ ***********************************

consensus_1865#0      CAAAAT-----------------TGCAATCCTTAAATGACAAATACCTATGAAATAGCGC 223
consensus_1865#1      CAAAATCGCGCGCATGTGCGCGCTGCAATCCTTAAATGACAAATACCTATGAAATAGCGC 190
                      ******                 *************************************

consensus_1865#0      GCCTCCCGTAAGAAGGCTATATACAATCATTGCAAAGATCGTGCATCGTTCG-ACCCAGG 282
consensus_1865#1      GCCTCCCGTAAGAAGGCTATATACAATCATTGCAAAGATCGTGCATCGTTCGCACCCAGC 250
                      **************************************************** ****** 

consensus_1865#0      TCCATTATCTCATTTTCTCATTGTTTGCCTGTTTT-GTTTTTGCTTCTTTTTTTTTAATA 341
consensus_1865#1      TCCATTATCTCATTTTCTCATTGTTTGCCTGTTTTTGTTTTTTGCTTCTTTTTTTTAATA 310
                      *********************************** ******   *  ************

consensus_1865#0      CCTAAAATGCAGCACATTTGCTTGCGTGTATGTGTAATTATGTACAATCATTACCGAAAA 401
consensus_1865#1      CC---------------------------------------------------------- 312
                      **                                                          

consensus_1865#0      CATCCAAATAAATGCTGTATAGTATGTTCTCTCAAATTGCAGCGCCATTTACACATTGCG 461
consensus_1865#1      ------------------------------------------------------------
                                                                                  

consensus_1865#0      GGGAGACGGGGGAAAAAATTACTCCCCCCNCCCACCCCCTCACAATCTCTCTCTCTCTCT 521
consensus_1865#1      ------------------------------------------------------------
                                                                                  

consensus_1865#0      CTTCCCCCATTTTTCCGCGGCGGGGGTGATGGGTGCATCGTAAATCAATAGGCAATAGGA 581
consensus_1865#1      ------------------------------------------------------------
                                                                                  

consensus_1865#0      TGAAATAAAGTCAAAGAGAGCCAGAGACAGACAGAGAGAGAGAGAAAAACG 632
consensus_1865#1      ---------------------------------------------------