These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1872#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 779 fasta sequence [CCGCGGTTAGAGAGAGAGAAAACAGAACAGCAAAAAGAAAGCATAACGAAAGTATAAACAAGAAAACGCACAACACTCCGAACAAGTGCAGACAATAACGAAACGAAAGTAGTGTGAAGCGTGTAATGCTTGCAACAAAACAGCCACTAAACGAACAAATAATATTTATATTCTGTTGTAGACATTTTCACTGAATCAAAACTTATTAGCCCCAAAACAAAGGAAAACAAACAAACAAGAAAACGCTAAAACCGACAGGTGAAGGTTACTATTCTTCAAATGGCTTAAGTAACTGCTCGCGGTACTGTACCCTGTCTGTAGGGGGTNCTCGGATGGACAAGATCAAACCAACAAACAAACAAGAGAGAAATATATAATCGCACACTTGGCCGGTTGGCTTGGTAAGTGTNTACTGAAAGGTAATCAAAACGCATACAAAAGTAGCACAAAAAACAAACAACAAACAAACAAGTAAATGCCAGTANATGCTGAACCCCAAATGCCATCAAAATACACTCGTAGATATTACCAAACACAAAAACAAGAGAACGGACAAGGTACGTACCGANGGTGANACACTGGGAGCCCCACGAACAGATACGTCCCGTAACCGNAGGCTAATGAACGATGGAGTAATATTACGACACAAATAGAGCGCTGCTTCCAGTCGCAAGCGATNNTTACAGGATNAGTTCATTTGACTAACGACTNNACNGCTAACGGTTTACCTNAACATGGTGCGANCACANGGCTAAANNATNGTAGGGTCAACGAAATCT] [+] EMBL AL694495 [CCGCGGTTAGAGAGAGAGAAAACAGAACAGCAAAAAGAAAGCATAACGAAAGTATAAACAAGAAAACGCACAACACTCCGAACAAGTGCAGACAATAACGAAACGAAAGTAGTGTGAAGCGTGTAATGCTTGCAACAAAACAGCCACTAAACGAACAAATAATATTTATATTCTGTTGTAGACATTTTCACTGAATCAAAACTTATTAGCCCCAAAACAAAGGAAAACAAACAAACAAGAAAACGCTAAAACCGACAGGTGAAGGTTACTATTCTTCAAATGGCTTAAGTAACTGCTCGCGGTACTGTACCCTGTCTGTAGGGGGTNCTCGGATGGACAAGATCAAACCAACAAACAAACAAGAGAGAAATATATAATCGCACACTTGGCCGGTTGGCTTGGTAAGTGTNTACTGAAAGGTAATCAAAACGCATACAAAAGTAGCACAAAAAACAAACAACAAACAAACAAGTAAATGCCAGTANATGCTGAACCCCAAATGCCATCAAAATACACTCGTAGATATTACCAAACACAAAAACAAGAGAACGGACAAGGTACGTACCGANGGTGANACACTGGGAGCCCCACGAACAGATACGTCCCGTAACCGNAGGCTAATGAACGATGGAGTAATATTACGACACAAATAGAGCGCTGCTTCCAGTCGCAAGCGATNNTTACAGGATNAGTTCATTTGACTAACGACTNNACNGCTAACGGTTTACCTNAACATGGTGCGANCACANGGCTAAANNATNGTAGGGTCAACGAAATCT] consensusID : consensus_1872#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [CCGGACAAAATCAAACCAACAAACAAACAAGAGAGAAATATATAATCGCACACTTGGCCGGCTGGCGTCGTAAGTGTATATGAAAGGTAATCAAAACGCATACAAAAGTAGCACAAAAACAACAAAAACAAACAAGTAAATGCAAGTAAATGCTGAACCCCAAATGCCATCAAAATACACTCGTGATATTACAAAACAAAAACAAGAGAACGGACAAGGTGCGTACGAAGGTGAAATGGGAGCTCCACGACAGCTCGTCCGTTCGAAGGCTAATGAAGATGGAGTAATATAGCAAATATGCGCTGCTTCAGTCGAACGAGCATACAGATAGTTATTGATAAGATAACGCTAGGTTTAGTTAGTGTGGTAAGGTTAGTATGTGGTAAGATTTAGCCGGGATTAAGAGTTTCACCTAGATCAATGTTATTTAGACTCAGTTATCGTTGGCAACTGATGATATTTTGCTCCCTCCTGTTTGCAAGAATTTTTGTATTGTTTTATTCTCGACTTTTTTTTCTTTCATTCAACGTATTTTTTGTATAGTTTATGAATAAAAGTTCAACTATCACGTTTTTCTTATCGTTTT] [+] EMBL BM603890 [CCGGACAAAATCAAACCAACAAACAAACAAGAGAGAAATATATAATCGCACACTTGGCCGGCTGGCGTCGTAAGTGTATATGAAAGGTAATCAAAACGCATACAAAAGTAGCACAAAAACAACAAAAACAAACAAGTAAATGCAAGTAAATGCTGAACCCCAAATGCCATCAAAATACACTCGTGATATTACAAAACAAAAACAAGAGAACGGACAAGGTGCGTACGAAGGTGAAATGGGAGCTCCACGACAGCTCGTCCGTTCGAAGGCTAATGAAGATGGAGTAATATAGCAAATATGCGCTGCTTCAGTCGAACGAGCATACAGATAGTTATTGATAAGATAACGCTAGGTTTAGTTAGTGTGGTAAGGTTAGTATGTGGTAAGATTTAGCCGGGATTAAGAGTTTCACCTAGATCAATGTTATTTAGACTCAGTTATCGTTGGCAACTGATGATATTTTGCTCCCTCCTGTTTGCAAGAATTTTTGTATTGTTTTATTCTCGACTTTTTTTTCTTTCATTCAACGTATTTTTTGTATAGTTTATGAATAAAAGTTCAACTATCACGTTTTTCTTATCGTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1872#0 CCGCGGTTAGAGAGAGAGAAAACAGAACAGCAAAAAGAAAGCATAACGAAAGTATAAACA 60 consensus_1872#1 ------------------------------------------------------------ consensus_1872#0 AGAAAACGCACAACACTCCGAACAAGTGCAGACAATAACGAAACGAAAGTAGTGTGAAGC 120 consensus_1872#1 ------------------------------------------------------------ consensus_1872#0 GTGTAATGCTTGCAACAAAACAGCCACTAAACGAACAAATAATATTTATATTCTGTTGTA 180 consensus_1872#1 ------------------------------------------------------------ consensus_1872#0 GACATTTTCACTGAATCAAAACTTATTAGCCCCAAAACAAAGGAAAACAAACAAACAAGA 240 consensus_1872#1 ------------------------------------------------------------ consensus_1872#0 AAACGCTAAAACCGACAGGTGAAGGTTACTATTCTTCAAATGGCTTAAGTAACTGCTCGC 300 consensus_1872#1 ------------------------------------------------------------ consensus_1872#0 GGTACTGTACCCTGTCTGTAGGGGGTNCTCGGATGGACAAGATCAAACCAACAAACAAAC 360 consensus_1872#1 --------------------------------CCGGACAAAATCAAACCAACAAACAAAC 28 ****** ******************* consensus_1872#0 AAGAGAGAAATATATAATCGCACACTTGGCCGGTTGGCTTGGTAAGTGTNTACTGAAAGG 420 consensus_1872#1 AAGAGAGAAATATATAATCGCACACTTGGCCGGCTGGCGTCGTAAGTGTATA-TGAAAGG 87 ********************************* **** * ******** ** ******* consensus_1872#0 TAATCAAAACGCATACAAAAGTAGCACAAAAAACAAACAACAAACAAACAAGTAAATGCC 480 consensus_1872#1 TAATCAAAACGCATACAAAAGTAGCACAAAAAC--AACAA-AAACAAACAAGTAAATGCA 144 ******************************** ***** ****************** consensus_1872#0 AGTANATGCTGAACCCCAAATGCCATCAAAATACACTCGTAGATATTACCAAACACAAAA 540 consensus_1872#1 AGTAAATGCTGAACCCCAAATGCCATCAAAATACACTCGT-GATATTACAAAACA--AAA 201 **** *********************************** ******** ***** *** consensus_1872#0 ACAAGAGAACGGACAAGGTACGTACCGANGGTGANACACTGGGAGCCCCACGAACAGATA 600 consensus_1872#1 ACAAGAGAACGGACAAGGTGCGTAC-GAAGGTGAAA---TGGGAGCTCCACGA-CAGCT- 255 ******************* ***** ** ***** * ******* ****** *** * consensus_1872#0 CGTCCCGTAACCGNAGGCTAATGAACGATGGAGTAATATTACGACACAAATAGAGCGCTG 660 consensus_1872#1 CGTCCGTT---CGAAGGCTAATGAA-GATGGAGTAATAT-----AGCAAATAT-GCGCTG 305 ***** * ** *********** ************* ****** ****** consensus_1872#0 CTTCCAGTCGCAAGCG-ATNNTTACAGGATNAGTTCATTTGACTAACGACTNNACNGCTA 719 consensus_1872#1 CTTC-AGTCGAACGAGCATACAGATAGTTATTGATAAGATAACGCTAGGTTTAGTTAGTG 364 **** ***** * * * ** * ** * * * * ** * * * consensus_1872#0 ACGGTTTACCTNAACATGGTGCGANC--ACANGGCTAAANNATNGTA---GGGTCAACGA 774 consensus_1872#1 TGGTAAGGTTAGTATGTGGTAAGATTTAGCCGGGATTAAGAGTTTCACCTAGATCAATGT 424 * * **** ** * ** * ** * * * **** * consensus_1872#0 AATCT------------------------------------------------------- 779 consensus_1872#1 TATTTAGACTCAGTTATCGTTGGCAACTGATGATATTTTGCTCCCTCCTGTTTGCAAGAA 484 ** * consensus_1872#0 ------------------------------------------------------------ consensus_1872#1 TTTTTGTATTGTTTTATTCTCGACTTTTTTTTCTTTCATTCAACGTATTTTTTGTATAGT 544 consensus_1872#0 ------------------------------------------ consensus_1872#1 TTATGAATAAAAGTTCAACTATCACGTTTTTCTTATCGTTTT 586 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||