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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1881#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence
[CCGGCGAATTCCCCGAGTGGCCCAAGCACACCGCCCACGGACGGCACTATCTGGAGCTGGGCCTCAACACGTCCTTCGTCGGTCGGGGCCCACGGTTGAGGCAGTGTGCCTTCTGGAAGAAGTACCTTCCCCAGCTAGTTGCAGCTACCTCGAACCTACCAGGGCCAGCACCGCCCAGTGAACCGTGCGAAAGCAGCGCATTTTTTTACCGACCTGATCTGATCGTGCTGCTGTTGTCGCTGCTTACGGCGACCGTCAGATTCATACAATAATTACTACCCCATCCATGGCCTAGTTCGTTTAAGCTTTAAGATAGTGAGGAACAAATTTTTCCTAACCAATTTCCCCCCCTTTAGAGCAGAACCGAGGGAGAGATAGGACTACATAGCGAAAAGGGAAATCAAGTGGTGGTGGGCGAGGAGAGAAGAAGCAAATCGAATAATCGAAGCAACAACAACAAAAAACTGCAACCGGGTTCACTAAACCCAGGGGGCAGCTCAGTAGCAAACTACTACTACTACTACTTTCTTATGGCAAATTATGGCAAGAGCAGTCGTGATGGGTTCGATCAGTATCCATATGACCGGAGCAGCTGAACCGTTTCATGGGCAGTTGCTGGAATACACCACGACC]
[+] EMBL BM627478 [CCGGCGAATTCCCCGAGTGGCCCAAGCACACCGCCCACGGACGGCACTATCTGGAGCTGGGCCTCAACACGTCCTTCGTCGGTCGGGGCCCACGGTTGAGGCAGTGTGCCTTCTGGAAGAAGTACCTTCCCCAGCTAGTTGCAGCTACCTCGAACCTACCAGGGCCAGCACCGCCCAGTGAACCGTGCGAAAGCAGCGCATTTTTTTACCGACCTGATCTGATCGTGCTGCTGTTGTCGCTGCTTACGGCGACCGTCAGATTCATACAATAATTACTACCCCATCCATGGCCTAGTTCGTTTAAGCTTTAAGATAGTGAGGAACAAATTTTTCCTAACCAATTTCCCCCCCTTTAGAGCAGAACCGAGGGAGAGATAGGACTACATAGCGAAAAGGGAAATCAAGTGGTGGTGGGCGAGGAGAGAAGAAGCAAATCGAATAATCGAAGCAACAACAACAAAAAACTGCAACCGGGTTCACTAAACCCAGGGGGCAGCTCAGTAGCAAACTACTACTACTACTACTTTCTTATGGCAAATTATGGCAAGAGCAGTCGTGATGGGTTCGATCAGTATCCATATGACCGGAGCAGCTGAACCGTTTCATGGGCAGTTGCTGGAATACACCACGACC]
consensusID : consensus_1881#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 376 fasta sequence
[CGAATTAAGCACGAGGATTACTACCCATCCATGGCCTAGTTCGTTTAAGCTTTAAGATAGTGAGGAACAAATTTTTCCCAAACAATTTTCCCCCCTTTAGAGCCAAGAACCGGAAAAAGGGGCGGGGGGGGAAGAGATTTAAAGGGGGACTTACCATAGCGAAAAGGGAAAACAAGTGGTGGCTCGTGACGATGTGAGAGAAGCAAAGGAAATGGCCAAAATCTNGCATAAGCTATAAACTCTGCATAAGCAGAGCAAAACAACCAGAACGAAANACCAANAAACAGAGCATACATACTGGGCGAAAANACCCTGCGGGTTCACCNTTAAAAAGACGCCAGNGGCAGGGCCCATGGCCATCACCAAGNTAAGGCCC]
[+] EMBL AL932389 [CGAATTAAGCACGAGGATTACTACCCATCCATGGCCTAGTTCGTTTAAGCTTTAAGATAGTGAGGAACAAATTTTTCCCAAACAATTTTCCCCCCTTTAGAGCCAAGAACCGGAAAAAGGGGCGGGGGGGGAAGAGATTTAAAGGGGGACTTACCATAGCGAAAAGGGAAAACAAGTGGTGGCTCGTGACGATGTGAGAGAAGCAAAGGAAATGGCCAAAATCTNGCATAAGCTATAAACTCTGCATAAGCAGAGCAAAACAACCAGAACGAAANACCAANAAACAGAGCATACATACTGGGCGAAAANACCCTGCGGGTTCACCNTTAAAAAGACGCCAGNGGCAGGGCCCATGGCCATCACCAAGNTAAGGCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1881#0 CCGGCGAATTCCCCGAGTGGCCCAAGCACACCGCCCACGGACGGCACTATCTGGAGCTGG 60
consensus_1881#1 ------------------------------------------------------------
consensus_1881#0 GCCTCAACACGTCCTTCGTCGGTCGGGGCCCACGGTTGAGGCAGTGTGCCTTCTGGAAGA 120
consensus_1881#1 ------------------------------------------------------------
consensus_1881#0 AGTACCTTCCCCAGCTAGTTGCAGCTACCTCGAACCTACCAGGGCCAGCACCGCCCAGTG 180
consensus_1881#1 ------------------------------------------------------------
consensus_1881#0 AACCGTGCGAAAGCAGCGCATTTTTTTACCGACCTGATCTGATCGTGCTGCTGTTGTCGC 240
consensus_1881#1 ------------------------------------------------------------
consensus_1881#0 TGCTTACGGCGACCGTCAGATTCA-TACAATAATTACTACCCCATCCATGGCCTAGTTCG 299
consensus_1881#1 ----------------CGAATTAAGCACGAGGATTACTACCC-ATCCATGGCCTAGTTCG 43
* *** * ** * ********** *****************
consensus_1881#0 TTTAAGCTTTAAGATAGTGAGGAACAAATTTTTCCTAACCAATTTCCCCCCCTTTAGAGC 359
consensus_1881#1 TTTAAGCTTTAAGATAGTGAGGAACAAATTTTTCCCAAACAATTTTCCCCCCTTTAGAGC 103
*********************************** ** ****** **************
consensus_1881#0 --AGAACCGAGGGAGAGATAGGACTACATAGCGA---AAAGGGAAATCAAGTGGTGGTGG 414
consensus_1881#1 CAAGAACCGGAAAAAGGGGCGGGGGGGGAAGAGATTTAAAGGGGGACTTACCATAGCGAA 163
******* * * ** ** ** ****** * * *
consensus_1881#0 GCGAGGAGAGAAGAAGCAAATCGAATAATCGAAGCAACAACAACAAAAAACTGCAACCGG 474
consensus_1881#1 AAGGGAAAACAAGTGGTGGCTCGTGACGATGTGAGAGAAGCAA-AGGAAATGGCCAAAAT 222
* * * * *** * *** * * * *** * *** ** *
consensus_1881#0 GTTCACTAAACCCAGGGGGCAGC-TCAGTAGCAAACTACTACTACTACTACTTTCTTATG 533
consensus_1881#1 CTNGCATAAGCTATAAACTCTGCATAAGCAGAGCAAAACAACCAGAACGAAANACCAANA 282
* *** * * ** * ** ** * ** ** * ** * * *
consensus_1881#0 G-CAAATTATGGCAA--GAGCAGTCGTGATGGGTTCGATCAGTATCCATATGACCGGAGC 590
consensus_1881#1 AACAGAGCATACATACTGGGCGAAAANACCCTGCGGGTTCACCNTTAAAAAGACGCCAGN 342
** * ** * * ** * * *** * * * *** **
consensus_1881#0 AGCTGAACCGTTTCATGGGCAGTTGCTGGAATACACCACGACC 633
consensus_1881#1 GGCAGGGCC----CATGGCCA-TCACCAAGNTAAGGCCC---- 376
** * ** ***** ** * * ** * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||