These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1914#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence [TGTGTGTACTATCGTATGCGCTAATTACACGTTTCTGTGAAACTGTACAATTAGCACGGTACACGGTCCATTAAATGTAAACGAAACCCCCTCCCAGACACCAGGACGAGAACGAGGAATGGTAGCAGCAGAATATAGGTACGCACGTCGCTGTAGTAGTAGAAGAAGATGGTAGAAATGTACATGTAATCCCGCCGCGTTGCGTTAAACAAAATCGTCCCTTCACGCTCCACGCTCTCCAGCCCGTTTAATGATACGATACTGTAAATATTATTTTTATTCTGCTGGCAGTTTTACGTAGAAACAAAACAACAAAAAAAGCTTGGAAAACCGCGATGTGTAAAGCGCACCACAAGGAATCATCGAAAAAAAAAGAGGTGAAAAATGTAGGCACAGCAAAACTTTTCGGCTCCCCGTCCAAGGAAGGGTAGAGAGCATTGAGTGAAACACAGTGAAACACAAAAATCAAAACAATAAGTTTTTGTTTTCACTCGCCCTCTCTGAACTCATAAGATCATGTGTTGTGGGCCTAAAGCTCCGCCAAGCCACATCCGCGTGCAGCATGCGANCACGGTAGCGATGTTTTATGCATAGCCCATGTNACCACGTGAACGTAAAGTCACGAGCCCCCAACAAAAAAAAACCCACGTGTGCACGATATAGCATTCGA] [+] EMBL BX619738 [TGTGTGTACTATCGTATGCGCTAATTACACGTTTCTGTGAAACTGTACAATTAGCACGGTACACGGTCCATTAAATGTAAACGAAACCCCCTCCCAGACACCAGGACGAGAACGAGGAATGGTAGCAGCAGAATATAGGTACGCACGTCGCTGTAGTAGTAGAAGAAGATGGTAGAAATGTACATGTAATCCCGCCGCGTTGCGTTAAACAAAATCGTCCCTTCACGCTCCACGCTCTCCAGCCCGTTTAATGATACGATACTGTAAATATTATTTTTATTCTGCTGGCAGTTTTACGTAGAAACAAAACAACAAAAAAAGCTTGGAAAACCGCGATGTGTAAAGCGCACCACAAGGAATCATCGAAAAAAAAAGAGGTGAAAAATGTAGGCACAGCAAAACTTTTCGGCTCCCCGTCCAAGGAAGGGTAGAGAGCATTGAGTGAAACACAGTGAAACACAAAAATCAAAACAATAAGTTTTTGTTTTCACTCGCCCTCTCTGAACTCATAAGATCATGTGTTGTGGGCCTAAAGCTCCGCCAAGCCACATCCGCGTGCAGCATGCGANCACGGTAGCGATGTTTTATGCATAGCCCATGTNACCACGTGAACGTAAAGTCACGAGCCCCCAACAAAAAAAAACCCACGTGTGCACGATATAGCATTCGA] consensusID : consensus_1914#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [AGCAGAATNCCCGAGGTTAACACTGTGTGTACTATCGTATGCGCTAATTACACGTTTCTGTGAAACTGTACAATTAGCACGGTACACGGTCCATTAAATGTANAACGAAACCCCCTCCCAGACACCAGGACGAGAACGAGGAATGGTAGCAGCAGAATATAGTGTACGCACGTACGCTGTAGTAGTAGAAGAAGATGGTAGAAATGTACATGTAATCCCGCCGCGTTGCGTTAAACAAAATCGTCCCTTCACGCTCCACTGCTCTCCAGCCCGTTTAATGATACGATACTGTAAATATTATTTTTATTCTGCTGGCAGTTTTACGTAGAAACAACAACAACNANANCAACAGCTTGGAAAACCGCGATGTGTACAAGCTGCACCACAAGGCAATCNTCGAAGCAACNNAAAAGAGGTGACNCNNATGTNAGGCACATGCAAAACTTTTCGGCTCCCCGTCCAAGNGANGGGTAGAGAGCATTGAGTGAAAACAGCAGATGAAACCACAANAANATCAAANACACATAAGTTATCTGGTATCACTCGCCCCTCTCTTGAAACTCATAAGATCACTTGGTGTACGTGGGCTAAAGCTCCGCCGAGGCCAGCATCCGGNCGGTGCAGCGATTGCGAGCCACGGTACGCGGACTGGTAATATGCANCTA] [+] EMBL AL932392 [AGCAGAATNCCCGAGGTTAACACTGTGTGTACTATCGTATGCGCTAATTACACGTTTCTGTGAAACTGTACAATTAGCACGGTACACGGTCCATTAAATGTANAACGAAACCCCCTCCCAGACACCAGGACGAGAACGAGGAATGGTAGCAGCAGAATATAGTGTACGCACGTACGCTGTAGTAGTAGAAGAAGATGGTAGAAATGTACATGTAATCCCGCCGCGTTGCGTTAAACAAAATCGTCCCTTCACGCTCCACTGCTCTCCAGCCCGTTTAATGATACGATACTGTAAATATTATTTTTATTCTGCTGGCAGTTTTACGTAGAAACAACAACAACNANANCAACAGCTTGGAAAACCGCGATGTGTACAAGCTGCACCACAAGGCAATCNTCGAAGCAACNNAAAAGAGGTGACNCNNATGTNAGGCACATGCAAAACTTTTCGGCTCCCCGTCCAAGNGANGGGTAGAGAGCATTGAGTGAAAACAGCAGATGAAACCACAANAANATCAAANACACATAAGTTATCTGGTATCACTCGCCCCTCTCTTGAAACTCATAAGATCACTTGGTGTACGTGGGCTAAAGCTCCGCCGAGGCCAGCATCCGGNCGGTGCAGCGATTGCGAGCCACGGTACGCGGACTGGTAATATGCANCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1914#0 -----------------------TGTGTGTACTATCGTATGCGCTAATTACACGTTTCTG 37 consensus_1914#1 AGCAGAATNCCCGAGGTTAACACTGTGTGTACTATCGTATGCGCTAATTACACGTTTCTG 60 ************************************* consensus_1914#0 TGAAACTGTACAATTAGCACGGTACACGGTCCATTAAATGTAAA-CGAAACCCCCTCCCA 96 consensus_1914#1 TGAAACTGTACAATTAGCACGGTACACGGTCCATTAAATGTANAACGAAACCCCCTCCCA 120 ****************************************** * *************** consensus_1914#0 GACACCAGGACGAGAACGAGGAATGGTAGCAGCAGAATATAG-GTACGCACGT-CGCTGT 154 consensus_1914#1 GACACCAGGACGAGAACGAGGAATGGTAGCAGCAGAATATAGTGTACGCACGTACGCTGT 180 ****************************************** ********** ****** consensus_1914#0 AGTAGTAGAAGAAGATGGTAGAAATGTACATGTAATCCCGCCGCGTTGCGTTAAACAAAA 214 consensus_1914#1 AGTAGTAGAAGAAGATGGTAGAAATGTACATGTAATCCCGCCGCGTTGCGTTAAACAAAA 240 ************************************************************ consensus_1914#0 TCGTCCCTTCACGCTCCAC-GCTCTCCAGCCCGTTTAATGATACGATACTGTAAATATTA 273 consensus_1914#1 TCGTCCCTTCACGCTCCACTGCTCTCCAGCCCGTTTAATGATACGATACTGTAAATATTA 300 ******************* **************************************** consensus_1914#0 TTTTTATTCTGCTGGCAGTTTTACGTAGAAACAA----AACAACAAAAAAAGCTTGGAAA 329 consensus_1914#1 TTTTTATTCTGCTGGCAGTTTTACGTAGAAACAACAACAACNANANCAACAGCTTGGAAA 360 ********************************** *** * * ** ********** consensus_1914#0 ACCGCGATGTGTA-AAGC-GCACCACAAGG-AATCATCGAAA----AAAAAAGAGGTGAA 382 consensus_1914#1 ACCGCGATGTGTACAAGCTGCACCACAAGGCAATCNTCGAAGCAACNNAAAAGAGGTGAC 420 ************* **** *********** **** ***** *********** consensus_1914#0 AAATGT---AGGCACA-GCAAAACTTTTCGGCTCCCCGTCCAAGG-AAGGGTAGAGAGCA 437 consensus_1914#1 NCNNATGTNAGGCACATGCAAAACTTTTCGGCTCCCCGTCCAAGNGANGGGTAGAGAGCA 480 * ******* *************************** * ************ consensus_1914#0 TTGAGTGAAA----CACAGTGAAACACAAAAATC---AAAACA-ATAAGTT-TTTGTTTT 488 consensus_1914#1 TTGAGTGAAAACAGCAGATGAAACCACAANAANATCAAANACACATAAGTTATCTGGTAT 540 ********** ** * ** ***** ** ** *** ******* * ** * * consensus_1914#0 CACTCGCCC---TCTCTGAACTCATAAGATCATGTGTTGTG---GGCCTAAAGCTCCGCC 542 consensus_1914#1 CACTCGCCCCTCTCTTGAAACTCATAAGATCACTTGGTGTACGTGGGCTAAAGCTCCGCC 600 ********* *** ************** ** *** ** ************* consensus_1914#0 AAGCC--ACATCCGCGTGCAGCATGCGANCACGGTAGCGATGTTTTATGCATAGCCCATG 600 consensus_1914#1 GAGGCCAGCATCCGGNCGGTGCA-GCGATTGCG--AGCCACGGTACGCGGACTGGTAATA 657 ** * ****** * *** **** ** *** * * * * * * ** consensus_1914#0 TNACCACGTGAACGTAAAGTCACGAGCCCCCAACAAAAAAAAACCCACGTGTGCACGATA 660 consensus_1914#1 TG--CANCTA-------------------------------------------------- 665 * ** * consensus_1914#0 TAGCATTCGA 670 consensus_1914#1 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||