These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1935#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGGCCGCCCTTTTTTTTTTTTTTTCTTGTGTAACTACTTTAATAACCGATTTATTTCCCATTCCGCACCATCTACAGATACTTTCCGAACCACTTGTGATCTACCGGAGACAACCATCGGTGGCAACCGCCGAGATTGTTCTGGATGATGTACTTAAAGTTCCACGGGTTTAGGTTTTCTCGTTCCAAACGCTCCTCCTCCGCTTTCATGTTTTCCAACATTTCCTGCGAAACCACCATTGCCTTGAACGGCAGCTTAGGACACACGATATCGAGAATTTTCTTCGCCTCTACAAATTCTAGCTCTCCCGCCAGCTCCACTATGACGCGCCCACTCTTCACCGGCGTAACGTAGTGATCGATGGCACCTTTACCACCACCCATGCGCTGGCCCTGGCCCTGCTTCGTCACCGGTTGCCACGGTGCCTCGACGCGCCAAATGGCAAACATGCGGCTCGTATCCATCTTGCGACCGATCGTCAATCGCAACATTTCATAGTGGCCCCATCGTAATCGGCCTCCCCCCGTCGCTACTATGCCGTACTGCTTGTGAACGAGCGAATTGTGCACCAGCTC] [+] EMBL BM582591 [CCGCCCACGCGTCCGCCCACGCGTCCGGGCCGCCCTTTTTTTTTTTTTTTCTTGTGTAACTACTTTAATAACCGATTTATTTCCCATTCCGCACCATCTACAGATACTTTCCGAACCACTTGTGATCTACCGGAGACAACCATCGGTGGCAACCGCCGAGATTGTTCTGGATGATGTACTTAAAGTTCCACGGGTTTAGGTTTTCTCGTTCCAAACGCTCCTCCTCCGCTTTCATGTTTTCCAACATTTCCTGCGAAACCACCATTGCCTTGAACGGCAGCTTAGGACACACGATATCGAGAATTTTCTTCGCCTCTACAAATTCTAGCTCTCCCGCCAGCTCCACTATGACGCGCCCACTCTTCACCGGCGTAACGTAGTGATCGATGGCACCTTTACCACCACCCATGCGCTGGCCCTGGCCCTGCTTCGTCACCGGTTGCCACGGTGCCTCGACGCGCCAAATGGCAAACATGCGGCTCGTATCCATCTTGCGACCGATCGTCAATCGCAACATTTCATAGTGGCCCCATCGTAATCGGCCTCCCCCCGTCGCTACTATGCCGTACTGCTTGTGAACGAGCGAATTGTGCACCAGCTC] consensusID : consensus_1935#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 305 fasta sequence [TTAGATTGAATTGTAATTGTTATTATCCCGCAAGTCTGGGTCCAAAATGCTGGCCAACTGTGAAAAGCTGCGACCATTGCTTTCGGGCTTGTTGCATGGTCAGTTCGGTCAGCAGATTGCCGGCATGAAGTTTTTTGCTCCACCGATTAAATATGACAATATTCAGATCCCAGAAAAGCCCAAACTCCGCTTTATGGACAAAGTTCCGCAGCTGCCGAGCAATCTCCGTGCACCAAAGATGCAGAAGAAGCTGAAATGGATGCGCGGCCCTGAGCTGGTGCACAATTCGCTTGTTCACAAGCAGT] [+] EMBL BX614120 [TTAGATTGAATTGTAATTGTTATTATCCCGCAAGTCTGGGTCCAAAATGCTGGCCAACTGTGAAAAGCTGCGACCATTGCTTTCGGGCTTGTTGCATGGTCAGTTCGGTCAGCAGATTGCCGGCATGAAGTTTTTTGCTCCACCGATTAAATATGACAATATTCAGATCCCAGAAAAGCCCAAACTCCGCTTTATGGACAAAGTTCCGCAGCTGCCGAGCAATCTCCGTGCACCAAAGATGCAGAAGAAGCTGAAATGGATGCGCGGCCCTGAGCTGGTGCACAATTCGCTTGTTCACAAGCAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1935#0 CCGCCCACGCGTCCGCCCACGCGTCCGGGCCGCCCTTTTTTTTTTTTTTTCTTGTGTAAC 60 consensus_1935#1 ------------------------------------------------------------ consensus_1935#0 TACTTTAATAACCGATTTATTTCCCATTCCGCACCATCTACAGATACTTTCCGAACCACT 120 consensus_1935#1 ------------------------------------------------------------ consensus_1935#0 TGTGATCTACCGGAGACAACCATCGGTGGCAACCGCCGAGATTGTTCTGGATGATGTACT 180 consensus_1935#1 ------------------------------------------------------------ consensus_1935#0 TAAAGTTCCACGGGTTTAGGTTTTCTCGTTCCAAACGCTCCTCCTCCGCTTTCATGTTTT 240 consensus_1935#1 ------------------------------------------------------------ consensus_1935#0 CCAACATTTCCTGCGAAACCACCATTGCCTTGAACGGCAGCTTAGGACACACGATATCGA 300 consensus_1935#1 -----------------------------------------TTAGATTGAATTGTAATTG 19 **** * ** consensus_1935#0 GAATTTTCTTCGCCTCTACAAATTCTAGCTCTCCCGCCAGCTCCACTATGACGCGCCCAC 360 consensus_1935#1 TTATTATCC-CGCAAGTCTGGGTCCAAAATG-CTGGCCAACTGTGAAAAGCTGCGACCAT 77 *** ** *** * * * * * * **** ** * * *** *** consensus_1935#0 TCTTCACCGGCGTAACGTAGTGATCGATGGCACCTTTACCACCACCCATGCGCTGGCCCT 420 consensus_1935#1 TGCTTTCGGGCTTGTTGCA-TGGTCAGTTCGGTCAGCAG-ATTGCCGGCATGAAGTTTTT 135 * * * *** * * * ** ** * * * * ** * * * consensus_1935#0 GGCCCTGCTTCGTCACCGGTTGCCACGGTGCCTCGACGCGCCAAATGGCAAACATGCGGC 480 consensus_1935#1 TGCTCCACCG----ATTAAATATGACAATATTCAGATCCCAGAAAAGCCCAAACTCCGCT 191 ** * * * * ** * ** * *** * * ** * ** consensus_1935#0 TCGTATCCA---TCTTGCGACCGATCGTCAATCGCAACATTTCATAGTGGCCCCA----T 533 consensus_1935#1 TTATGGACAAAGTTCCGCAGCTGCCGAGCAATCTCCGTGCACCAAAGATGCAGAAGAAGC 251 * * ** * ** * * ***** * ** ** ** * consensus_1935#0 CGTAATCGGC-CTCCCCCCGTCGCTACTATGCCGTACTGCTTGTGAACGAGCGAATTGTG 592 consensus_1935#1 TGAAATGGATGCGCGGCCCTGAGCTGGTGCACAATTC-GCTTGTTCACAAGCAGT----- 305 * *** * * * *** *** * * * * ****** ** *** consensus_1935#0 CACCAGCTC 601 consensus_1935#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||