cluster # 196

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Anopheles gambiae
cluster # 196 cluster # 196 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_196#0 length = 548 sequences # 1

consensus_196#1 length = 399 sequences # 1

consensusID : consensus_196#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 548
fasta sequence

                              [AGATCCAGGCTANAAGCAGGTAATGGATAAGTTGCGCGCCCAACCTATAGAGTATTGCAATTGCATTCGGACGGTTAGGACGTCCGTATGTATGTGTGTGTGTGTGTTGTAGATGAGATCATTGTATATCTACATATTATGTATGTGTTGTATAGTGTGATACAAGCGCGAACCGGACGCGTCTTATATTATCGTGAGAGATAAAAGCGCGTCTGCAGAGCAATTTGTCGTAAAAAAAATCAAAACCAGCTTCATTACTATTAGTACGATCCTTCTATCTACATATATATACTATACATGATGCTACTTTCTAAACGCGCGCGTGTGCGTGTTTATGCTGTATTTTAGTAATCCGTTTTCTAGTACGTCAGTGTACAGTGTTGTAGTAGCAAGCACCAAGCCGCTCAGAACGCATCCAGAGGGCGCTAGAGAGTTCTTTATCATTGAAAAAAAAACCAACAACAAACCAATTGTGTACNGNGATTAATGGCTAATATTTGGACTGATTTTTTAACACACCGGTGTGGNCATAGNATATATTTCNAGGC]

[+] EMBL AL933093             [AGATCCAGGCTANAAGCAGGTAATGGATAAGTTGCGCGCCCAACCTATAGAGTATTGCAATTGCATTCGGACGGTTAGGACGTCCGTATGTATGTGTGTGTGTGTGTTGTAGATGAGATCATTGTATATCTACATATTATGTATGTGTTGTATAGTGTGATACAAGCGCGAACCGGACGCGTCTTATATTATCGTGAGAGATAAAAGCGCGTCTGCAGAGCAATTTGTCGTAAAAAAAATCAAAACCAGCTTCATTACTATTAGTACGATCCTTCTATCTACATATATATACTATACATGATGCTACTTTCTAAACGCGCGCGTGTGCGTGTTTATGCTGTATTTTAGTAATCCGTTTTCTAGTACGTCAGTGTACAGTGTTGTAGTAGCAAGCACCAAGCCGCTCAGAACGCATCCAGAGGGCGCTAGAGAGTTCTTTATCATTGAAAAAAAAACCAACAACAAACCAATTGTGTACNGNGATTAATGGCTAATATTTGGACTGATTTTTTAACACACCGGTGTGGNCATAGNATATATTTCNAGGC]




>consensus_196#0
AGATCCAGGCTANAAGCAGGTAATGGATAAGTTGCGCGCCCAACCTATAGAGTATTGCAA
TTGCATTCGGACGGTTAGGACGTCCGTATGTATGTGTGTGTGTGTGTTGTAGATGAGATC
ATTGTATATCTACATATTATGTATGTGTTGTATAGTGTGATACAAGCGCGAACCGGACGC
GTCTTATATTATCGTGAGAGATAAAAGCGCGTCTGCAGAGCAATTTGTCGTAAAAAAAAT
CAAAACCAGCTTCATTACTATTAGTACGATCCTTCTATCTACATATATATACTATACATG
ATGCTACTTTCTAAACGCGCGCGTGTGCGTGTTTATGCTGTATTTTAGTAATCCGTTTTC
TAGTACGTCAGTGTACAGTGTTGTAGTAGCAAGCACCAAGCCGCTCAGAACGCATCCAGA
GGGCGCTAGAGAGTTCTTTATCATTGAAAAAAAAACCAACAACAAACCAATTGTGTACNG
NGATTAATGGCTAATATTTGGACTGATTTTTTAACACACCGGTGTGGNCATAGNATATAT
TTCNAGGC

consensusID : consensus_196#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 399
fasta sequence

                              [GAATCGCACGAGGTTGTATATCAGCCTTTATCTCATCTCCGTGCTGCTCTTCGCGAAGGCGCTCTACTACTGCTCGCTCAAGATTAGCAACATTGATGGGCCGTTTACAACGGTCACTTCTTAAAACAGACTACCGTAAAGTGCAACACATTCCTAACATGAGCAAGCAGCAAGCGCCGGCGGCGGCGGCGGCGGCGTCTTTTGCAGCGCAGCCCGTGCGTGTGCGCGTGTGCGTTTCGCTATAGAGTCGATGGATGCGCAGTTAGCATTAGCACGGTGTGATAAANAGCGGTGATATAACGATACAAGAACAGTGGTGTGTGTGCGTGTGTGAAGAAACAGTTNGGGAACTGCAGGGCTCCATTGGAGGAATGAATGGTAGCGGGCAAGCAGGATGGT]

[+] EMBL BX469291             [GAATCGCACGAGGTTGTATATCAGCCTTTATCTCATCTCCGTGCTGCTCTTCGCGAAGGCGCTCTACTACTGCTCGCTCAAGATTAGCAACATTGATGGGCCGTTTACAACGGTCACTTCTTAAAACAGACTACCGTAAAGTGCAACACATTCCTAACATGAGCAAGCAGCAAGCGCCGGCGGCGGCGGCGGCGGCGTCTTTTGCAGCGCAGCCCGTGCGTGTGCGCGTGTGCGTTTCGCTATAGAGTCGATGGATGCGCAGTTAGCATTAGCACGGTGTGATAAANAGCGGTGATATAACGATACAAGAACAGTGGTGTGTGTGCGTGTGTGAAGAAACAGTTNGGGAACTGCAGGGCTCCATTGGAGGAATGAATGGTAGCGGGCAAGCAGGATGGT]




>consensus_196#1
GAATCGCACGAGGTTGTATATCAGCCTTTATCTCATCTCCGTGCTGCTCTTCGCGAAGGC
GCTCTACTACTGCTCGCTCAAGATTAGCAACATTGATGGGCCGTTTACAACGGTCACTTC
TTAAAACAGACTACCGTAAAGTGCAACACATTCCTAACATGAGCAAGCAGCAAGCGCCGG
CGGCGGCGGCGGCGGCGTCTTTTGCAGCGCAGCCCGTGCGTGTGCGCGTGTGCGTTTCGC
TATAGAGTCGATGGATGCGCAGTTAGCATTAGCACGGTGTGATAAANAGCGGTGATATAA
CGATACAAGAACAGTGGTGTGTGTGCGTGTGTGAAGAAACAGTTNGGGAACTGCAGGGCT
CCATTGGAGGAATGAATGGTAGCGGGCAAGCAGGATGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_196#0      AGATCCAGGCTANAAGCAGGTAATGGATAAGTTGCGCGCCCAACCTATAGAGTATTGCAA 60
consensus_196#1      ---------------------------------------------------------GAA 3
                                                                               **

consensus_196#0      TTGCATTCGGACGGTTAGGACGTCCGTATGTATGTGTGTGTGTGTGTTGTAGATGAGATC 120
consensus_196#1      TCGCACGAGGTTGTATATCA-GCCTTTATCT-CATCTCCGTGC-TGCTCTTCGCGAAGGC 60
                     * ***   **  *  **  * * *  *** *   * *  ***  ** * *    **   *

consensus_196#0      ATTGTATATCTACATATTATGTATGTGTTGTATAGTGTGATACAAGCGCGAACCGGACGC 180
consensus_196#1      GCTCTACTACTGCTCGCTCAAGATTAGCAACATTG-ATGGGCCGTTTACAA--CGGTCAC 117
                       * **   ** *    *    **  *    ** *  **   *     * *  *** * *

consensus_196#0      GTCTTATA-----TTATCGTGAGAGATAAAAGCGCGTCTGCA-GAGCAATTTGTCGTAAA 234
consensus_196#1      TTCTTAAAACAGACTACCGTAAAGTGCAACACATTCCTAACATGAGCAAGCAGCAAGCGC 177
                      ***** *      ** *** *     ** *         ** ******   *       

consensus_196#0      AAAAATCAAAACCAGCTTCATTACTATTAGTACGATCCTTCTATCTACATATATATACTA 294
consensus_196#1      CGGCGGCGGCGGCGGCGGCGTCTTTTGCAGCGCAGCCCGTGCGTGTGCGCGTGTGCGTTT 237
                           *     * **  * *   *   **  *   ** *   * * *   * *    * 

consensus_196#0      TACATGATGCTACTTTCTAAACGCGCGCGTGTGCGTGTTTATGCTGTATTTTAGTAATCC 354
consensus_196#1      CGCTATAG---AGTCGATGGATGCGCA---GTTAGCATTAGCACGGTGTGATAAANAGCG 291
                       *   *    * *   *  * ****    **  *  **    * ** *  **   * * 

consensus_196#0      GTTTTCTAGTACGTCAGTGTACAGTGTTGTAGTAGCAAGCACCAAGCCGCTCAGAACGCA 414
consensus_196#1      GTGATATAACGATACAA-GAACAGTGGTGTGTGTGCGTGTGTGAAG-------AAACAGT 343
                     **  * **      **  * ****** ***    **  *    ***        ***   

consensus_196#0      TCCAGAGGGCGCTAGAGAGTTCTTTATCATTGAAAAAAAAACCAACAACAAACCAATTGT 474
consensus_196#1      T----NGGGAACTGCAGGGCTC-----CATTGGAGGAATGAATGGTAGCGGGCAAGCAGG 394
                     *     ***  **  ** * **     ***** *  **  *     * *   * *   * 

consensus_196#0      GTACNGNGATTAATGGCTAATATTTGGACTGATTTTTTAACACACCGGTGTGGNCATAGN 534
consensus_196#1      ATGGT------------------------------------------------------- 399
                      *                                                          

consensus_196#0      ATATATTTCNAGGC 548
consensus_196#1      --------------