These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1960#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 816 fasta sequence [CATGGTTTGCGGTAAGGAAACGTTGTTCGCCCTCGGCACGCTGCTGCTTGCCTGCTGTCTGCTGGAGTGGGCCGAAGGTCGCGGCGCCACCGGCCCCAGCCTCGACGTTGGACAGCGGCTGCGTGCGTTGAAGGCGCGCAAAGCGTCCGCGGTCAATGGTGCAGCACCGATCAAGTTCAAGCCGTGGGAGGCGGGCCTGGGCGTCTACAAGGAGGGCGACATCATGGAGCGAGTCGTCCGCCAGCGGAACGGGGTGGCGCTGAGCGCCTTCCCGAATGCGCGCTGGCCGAACGCAGTCGTACCGTACGTGGTGACGAACACCTTCACGACAACACAGCAGGGCGTCATTCAATCGGCAATGGCACAGATCGCTGCCGCCACGTGTGTCCGGTTCGTTCCGCGCACCACGCAAACGCTGTACGTGACGATCGGTAACGGCGAGAGTGGCTGCTGGTCGTACGTTGGCCGCAGTACCCGCAACAGCGAAAATCAGGTGAACCTGCAGAGCCCGGAGTGTGTGGACATCGGTACGGTGGTGCACGAGCTGATGCACTCGATCGGTTTCTATCACGAGTTTACGCGCCCGGATCGTGACGAGTGGGTGACGATCGATCAAGGCGCACTCGCGCCCGAGTACCAGTCGGCCACGTTCTACGCCGACAACTACGGCAAGATGGCCGCCAGCGACGTGGTGCTGTACGGCCGGAAGTACGACTACNGTAGTGTGATGCACTACTCCAAGTACGCGGCAGCAGCAAGCCGTACGCGCCCCGTCATGAACAACCTGCAGCCCTGGACCGGGGACTTCGGCAACGA] [+] EMBL BX621134 [CATGGTTTGCGGTAAGGAAACGTTGTTCGCCCTCGGCACGCTGCTGCTTGCCTGCTGTCTGCTGGAGTGGGCCGAAGGTCGCGGCGCCACCGGCCCCAGCCTCGACGTTGGACAGCGGCTGCGTGCGTTGAAGGCGCGCAAAGCGTCCGCGGTCAATGGTGCAGCACCGATCAAGTTCAAGCCGTGGGAGGCGGGCCTGGGCGTCTACAAGGAGGGCGACATCATGGAGCGAGTCGTCCGCCAGCGGAACGGGGTGGCGCTGAGCGCCTTCCCGAATGCGCGCTGGCCGAACGCAGTCGTACCGTACGTGGTGACGAACACCTTCACGACAACACAGCAGGGCGTCATTCAATCGGCAATGGCACAGATCGCTGCCGCCACGTGTGTCCGGTTCGTTCCGCGCACCACGCAAACGCTGTACGTGACGATCGGTAACGGCGAGAGTGGCTGCTGGTCGTACGTTGGCCGCAGTACCCGCAACAGCGAAAATCAGGTGAACCTGCAGAGCCCGGAGTGTGTGGACATCGGTACGGTGGTGCACGAGCTGATGCACTCGATCGGTTTCTATCACGAGTTTACGCGCCCGGATCGTGACGAGTGGGTGACGATCGATCAAGGCGCACTCGCGCCCGAGTACCAGTCGGCCACGTTCTACGCCGACAACTACGGCAAGATGGCCGCCAGCGACGTGGTGCTGTACGGCCGGAAGTACGACTACNGTAGTGTGATGCACTACTCCAAGTACGCGGCAGCAGCAAGCCGTACGCGCCCCGTCATGAACAACCTGCAGCCCTGGACCGGGGACTTCGGCAACGA] consensusID : consensus_1960#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence [GGCCCAGGGATTTATGGAGCGAGTGTCCGCCAGCGGAACGGGGTGGTGCTGAGCGCCTTCCCGAATGCGCGCTGGCCGAACGCAGTCGTACCGTACGTGGTGACGAACACCTTCTACAACACAGCAGGGCGTCATTCAATCGGCAATGGCACAGATCGCTGCCGCCACGTGTGTCCGGTTCGTTCCGCGCACACGCAAACGCTGTACGTGACGATCGGTAACGGGCGAGAGTGGCTGCTGGTCGTACGTTGGCCGCCAGTACCCGCAACAGCGAANAATCAGGTGAACCTGCAGAGCCCGGAGTGTGTGGACATCGGTACGGTGGTGCACGAGCTGATGCACTCGATCGGTTTCTATCACGAGTTTACGCGCCCGGATCGTAGACGAGTGGGTGACGATCGATCAAGGCGCACTCGCGCCCGAGTACCAGTCGGCACGTTCTACGCCGACAACTACGGCAAGATGGCCGCCAGCGACGTGGTGCTGTACGGCCGGAAGTACGACTACGGTAGTGTGATGCACTACTCCAAGTACGCGGCANACACGCCANGCCGTACGCGCCCCGTCATGAACAACTGCAGCCCTGGACC] [+] EMBL AL694917 [GGCCCAGGGATTTATGGAGCGAGTGTCCGCCAGCGGAACGGGGTGGTGCTGAGCGCCTTCCCGAATGCGCGCTGGCCGAACGCAGTCGTACCGTACGTGGTGACGAACACCTTCTACAACACAGCAGGGCGTCATTCAATCGGCAATGGCACAGATCGCTGCCGCCACGTGTGTCCGGTTCGTTCCGCGCACACGCAAACGCTGTACGTGACGATCGGTAACGGGCGAGAGTGGCTGCTGGTCGTACGTTGGCCGCCAGTACCCGCAACAGCGAANAATCAGGTGAACCTGCAGAGCCCGGAGTGTGTGGACATCGGTACGGTGGTGCACGAGCTGATGCACTCGATCGGTTTCTATCACGAGTTTACGCGCCCGGATCGTAGACGAGTGGGTGACGATCGATCAAGGCGCACTCGCGCCCGAGTACCAGTCGGCACGTTCTACGCCGACAACTACGGCAAGATGGCCGCCAGCGACGTGGTGCTGTACGGCCGGAAGTACGACTACGGTAGTGTGATGCACTACTCCAAGTACGCGGCANACACGCCANGCCGTACGCGCCCCGTCATGAACAACTGCAGCCCTGGACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1960#0 CATGGTTTGCGGTAAGGAAACGTTGTTCGCCCTCGGCACGCTGCTGCTTGCCTGCTGTCT 60 consensus_1960#1 ------------------------------------------------------------ consensus_1960#0 GCTGGAGTGGGCCGAAGGTCGCGGCGCCACCGGCCCCAGCCTCGACGTTGGACAGCGGCT 120 consensus_1960#1 ------------------------------------------------------------ consensus_1960#0 GCGTGCGTTGAAGGCGCGCAAAGCGTCCGCGGTCAATGGTGCAGCACCGATCAAGTTCAA 180 consensus_1960#1 ------------------------------------------------------------ consensus_1960#0 GCCGTGGGAGGCGGGCCTGGGCGTCTACAAGGAGGGCGACATCATGGAGCGAGTCGTCCG 240 consensus_1960#1 ------------------------------GGCCCAGGGATTTATGGAGCGAGT-GTCCG 29 ** * * *********** ***** consensus_1960#0 CCAGCGGAACGGGGTGGCGCTGAGCGCCTTCCCGAATGCGCGCTGGCCGAACGCAGTCGT 300 consensus_1960#1 CCAGCGGAACGGGGTGGTGCTGAGCGCCTTCCCGAATGCGCGCTGGCCGAACGCAGTCGT 89 ***************** ****************************************** consensus_1960#0 ACCGTACGTGGTGACGAACACCTTCACGACAACACAGCAGGGCGTCATTCAATCGGCAAT 360 consensus_1960#1 ACCGTACGTGGTGACGAACACCTTC--TACAACACAGCAGGGCGTCATTCAATCGGCAAT 147 ************************* ******************************** consensus_1960#0 GGCACAGATCGCTGCCGCCACGTGTGTCCGGTTCGTTCCGCGCACCACGCAAACGCTGTA 420 consensus_1960#1 GGCACAGATCGCTGCCGCCACGTGTGTCCGGTTCGTTCCGCGCAC-ACGCAAACGCTGTA 206 ********************************************* ************** consensus_1960#0 CGTGACGATCGGTAACGG-CGAGAGTGGCTGCTGGTCGTACGTTGGCCGC-AGTACCCGC 478 consensus_1960#1 CGTGACGATCGGTAACGGGCGAGAGTGGCTGCTGGTCGTACGTTGGCCGCCAGTACCCGC 266 ****************** ******************************* ********* consensus_1960#0 AACAGCGAAAA-TCAGGTGAACCTGCAGAGCCCGGAGTGTGTGGACATCGGTACGGTGGT 537 consensus_1960#1 AACAGCGAANAATCAGGTGAACCTGCAGAGCCCGGAGTGTGTGGACATCGGTACGGTGGT 326 ********* * ************************************************ consensus_1960#0 GCACGAGCTGATGCACTCGATCGGTTTCTATCACGAGTTTACGCGCCCGGATCGT-GACG 596 consensus_1960#1 GCACGAGCTGATGCACTCGATCGGTTTCTATCACGAGTTTACGCGCCCGGATCGTAGACG 386 ******************************************************* **** consensus_1960#0 AGTGGGTGACGATCGATCAAGGCGCACTCGCGCCCGAGTACCAGTCGGCCACGTTCTACG 656 consensus_1960#1 AGTGGGTGACGATCGATCAAGGCGCACTCGCGCCCGAGTACCAGTCGGC-ACGTTCTACG 445 ************************************************* ********** consensus_1960#0 CCGACAACTACGGCAAGATGGCCGCCAGCGACGTGGTGCTGTACGGCCGGAAGTACGACT 716 consensus_1960#1 CCGACAACTACGGCAAGATGGCCGCCAGCGACGTGGTGCTGTACGGCCGGAAGTACGACT 505 ************************************************************ consensus_1960#0 ACNGTAGTGTGATGCACTACTCCAAGTACGCGGCAG---CAGCAAGCCGTACGCGCCCCG 773 consensus_1960#1 ACGGTAGTGTGATGCACTACTCCAAGTACGCGGCANACACGCCANGCCGTACGCGCCCCG 565 ** ******************************** * ** *************** consensus_1960#0 TCATGAACAACCTGCAGCCCTGGACCGGGGACTTCGGCAACGA 816 consensus_1960#1 TCATGAACAAC-TGCAGCCCTGGACC----------------- 590 *********** ************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||