These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2034#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 832 fasta sequence [ACCGTCGGAGAACTCAGCGCAGGAAGTGATGGATGAGGCTGAACCTTCTTCGTCATCTGTTGTGCCGTCGGAAGTTACCAGCTCGGATCCAGCCAACACTCAGGAAGAGGAGTCGAACGAGGTTGAAGTTATGGATGATGTCACAACACAGCAGGAAGAACAGCAACAGTCGGAACAGGAACAAACAGTGTCCTCAGAACCTGCCCCTTCCATTGAGTACTCCGATGCCACACCTCAGGATGAAGTTGTCGAAGCGGAACCACCTGTAAACACCGAAACGGAAGCTGAAAGTACCCCGACCGATCCGGAACCGTCCGCTACCGTGGAGCTGGAAAACGAAACACAGCACCAAGCCGACTCGCTGATCAATGCCGTACAGGCGGTAGAAGAGCTAGAACCTATCGTACACGAGCTCGCTGCAGAGACAGAAGAACTGAAACCACTCGTTGCCGAGCTAGTGCAAGATCCCGCTGTTCCAGCTCCTAGCCAAGAAGACAACGAACTGCTTGCACCCGAATCGGACACCAGCGCAACAACCGATATGGAAGCGCCACAAGCGGCATCGGATGCGTCATCCAGCGATAGTGAACCGACCAGCGACGCAGCGACGATGGAAAGCGATGCGGTGAACGAACTATCGCCCGAGATGGTGTTGAGCTCGGCCGTACCGGCTGATGATTCATCGAACACGATCGATACGGTCAGTGTGGAGGCGGACGAAACGGCACAGCCCGCCGTCGCACCGGAAACGATCGATGACGTCCAGCAGACGGAAGGTGAAGCAGCCACACCCGACGCACCGGAACGACCNATGGGAAAGCCCCGCGATCGT] [+] EMBL BX621279 [ACCGTCGGAGAACTCAGCGCAGGAAGTGATGGATGAGGCTGAACCTTCTTCGTCATCTGTTGTGCCGTCGGAAGTTACCAGCTCGGATCCAGCCAACACTCAGGAAGAGGAGTCGAACGAGGTTGAAGTTATGGATGATGTCACAACACAGCAGGAAGAACAGCAACAGTCGGAACAGGAACAAACAGTGTCCTCAGAACCTGCCCCTTCCATTGAGTACTCCGATGCCACACCTCAGGATGAAGTTGTCGAAGCGGAACCACCTGTAAACACCGAAACGGAAGCTGAAAGTACCCCGACCGATCCGGAACCGTCCGCTACCGTGGAGCTGGAAAACGAAACACAGCACCAAGCCGACTCGCTGATCAATGCCGTACAGGCGGTAGAAGAGCTAGAACCTATCGTACACGAGCTCGCTGCAGAGACAGAAGAACTGAAACCACTCGTTGCCGAGCTAGTGCAAGATCCCGCTGTTCCAGCTCCTAGCCAAGAAGACAACGAACTGCTTGCACCCGAATCGGACACCAGCGCAACAACCGATATGGAAGCGCCACAAGCGGCATCGGATGCGTCATCCAGCGATAGTGAACCGACCAGCGACGCAGCGACGATGGAAAGCGATGCGGTGAACGAACTATCGCCCGAGATGGTGTTGAGCTCGGCCGTACCGGCTGATGATTCATCGAACACGATCGATACGGTCAGTGTGGAGGCGGACGAAACGGCACAGCCCGCCGTCGCACCGGAAACGATCGATGACGTCCAGCAGACGGAAGGTGAAGCAGCCACACCCGACGCACCGGAACGACCNATGGGAAAGCCCCGCGATCGT] consensusID : consensus_2034#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence [CCGAGGTTAAGTCGGAACAGGAACAAACAGTGTCTCAGAACTGNCCCTTCCATTGAGTACTCCGATGCCACACCTCAGTGATGAAGTTGTCGAAGCGGAACCACCTGTAAACACCTGAAACTGGAAGCTGAAAGTACCCCTGACCTGATCCTGTGAACCTGTCCTGCTACCTGTGTGATGCTGGAAAACGAAACACAGCACCAAGCCTGACTCGCTGATCAATGCCTGTACAGTGCTGTGTAGAAGAGCTAGAACCTATCTGTACACTGAGCTCGCTGCAGAGACATGAAGAACTTGAAACCACTCTGTTGCCTGAGCTAGTTGCAATGATCCCTGCTGTTCCAGCATCCTAGCCAAGAACGACAACTGAACTGNCTTGCAACCCGAATCGGACACCAGCNGCAACAACCGATATGGAAGCTGCCACAAGCGGCATCGGATGCGTCATCCAGCGATAGTGAACCGACCAGCGACGCAGCGACGATGGAAAGCGATGCTGGTGAACGAACTATCGCCCGAGATGGTGTTNGAGGCTCGGCGTACCTGGCTGATGATTCATCGAACACG] [+] EMBL AL695344 [CCGAGGTTAAGTCGGAACAGGAACAAACAGTGTCTCAGAACTGNCCCTTCCATTGAGTACTCCGATGCCACACCTCAGTGATGAAGTTGTCGAAGCGGAACCACCTGTAAACACCTGAAACTGGAAGCTGAAAGTACCCCTGACCTGATCCTGTGAACCTGTCCTGCTACCTGTGTGATGCTGGAAAACGAAACACAGCACCAAGCCTGACTCGCTGATCAATGCCTGTACAGTGCTGTGTAGAAGAGCTAGAACCTATCTGTACACTGAGCTCGCTGCAGAGACATGAAGAACTTGAAACCACTCTGTTGCCTGAGCTAGTTGCAATGATCCCTGCTGTTCCAGCATCCTAGCCAAGAACGACAACTGAACTGNCTTGCAACCCGAATCGGACACCAGCNGCAACAACCGATATGGAAGCTGCCACAAGCGGCATCGGATGCGTCATCCAGCGATAGTGAACCGACCAGCGACGCAGCGACGATGGAAAGCGATGCTGGTGAACGAACTATCGCCCGAGATGGTGTTNGAGGCTCGGCGTACCTGGCTGATGATTCATCGAACACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2034#0 ACCGTCGGAGAACTCAGCGCAGGAAGTGATGGATGAGGCTGAACCTTCTTCGTCATCTGT 60 consensus_2034#1 ------------------------------------------------------------ consensus_2034#0 TGTGCCGTCGGAAGTTACCAGCTCGGATCCAGCCAACACTCAGGAAGAGGAGTCGAACGA 120 consensus_2034#1 ------------------------------------------------------------ consensus_2034#0 GGTTGAAGTTATGGATGATGTCACAACACAGCAGGAAGAACAGCAACAGTCGGAACAGGA 180 consensus_2034#1 --------------------------------------CCGAGGTTAAGTCGGAACAGGA 22 ** ************* consensus_2034#0 ACAAACAGTGTCCTCAGAACCTGCCCCTTCCATTGAGTACTCCGATGCCACACCTCAG-G 239 consensus_2034#1 ACAAACAGTGTC-TCAGAAC-TGNCCCTTCCATTGAGTACTCCGATGCCACACCTCAGTG 80 ************ ******* ** ********************************** * consensus_2034#0 ATGAAGTTGTCGAAGCGGAACCACCTGTAAACACC-GAAAC-GGAAGCTGAAAGTACCCC 297 consensus_2034#1 ATGAAGTTGTCGAAGCGGAACCACCTGTAAACACCTGAAACTGGAAGCTGAAAGTACCCC 140 *********************************** ***** ****************** consensus_2034#0 -GACC-GATCC---GGAACCGTCC-GCTACC---GTGGAGCTGGAAAACGAAACACAGCA 348 consensus_2034#1 TGACCTGATCCTGTGAACCTGTCCTGCTACCTGTGTGATGCTGGAAAACGAAACACAGCA 200 **** ***** * * * **** ****** *** ********************* consensus_2034#0 CCAAGCC-GACTCGCTGATCAATGCC-GTACAG-GCGGT--AGAAGAGCTAGAACCTATC 403 consensus_2034#1 CCAAGCCTGACTCGCTGATCAATGCCTGTACAGTGCTGTGTAGAAGAGCTAGAACCTATC 260 ******* ****************** ****** ** ** ******************* consensus_2034#0 -GTACAC-GAGCTCGCTGCAGAGACA-GAAGAACT-GAAACCACTC-GTTGCC-GAGCTA 457 consensus_2034#1 TGTACACTGAGCTCGCTGCAGAGACATGAAGAACTTGAAACCACTCTGTTGCCTGAGCTA 320 ****** ****************** ******** ********** ****** ****** consensus_2034#0 GT-GCAA-GATCCC-GCTGTTCCAGC-TCCTAGCCAAGAA-GACAAC-GAACTGC-TTGC 510 consensus_2034#1 GTTGCAATGATCCCTGCTGTTCCAGCATCCTAGCCAAGAACGACAACTGAACTGNCTTGC 380 ** **** ****** *********** ************* ****** ****** **** consensus_2034#0 A-CCCGAATCGGACACCAGCG-CAACAACCGATATGGAAGC-GCCACAAGCGGCATCGGA 567 consensus_2034#1 AACCCGAATCGGACACCAGCNGCAACAACCGATATGGAAGCTGCCACAAGCGGCATCGGA 440 * ****************** ******************* ****************** consensus_2034#0 TGCGTCATCCAGCGATAGTGAACCGACCAGCGACGCAGCGACGATGGAAAGCGATGC-GG 626 consensus_2034#1 TGCGTCATCCAGCGATAGTGAACCGACCAGCGACGCAGCGACGATGGAAAGCGATGCTGG 500 ********************************************************* ** consensus_2034#0 TGAACGAACTATCGCCCGAGATGGTGTTGA--GCTCGGCCGTACCGGCTGATGATTCATC 684 consensus_2034#1 TGAACGAACTATCGCCCGAGATGGTGTTNGAGGCTCGGCGTACCTGGCTGATGATTCATC 560 **************************** ******* * *************** consensus_2034#0 GAACACGATCGATACGGTCAGTGTGGAGGCGGACGAAACGGCACAGCCCGCCGTCGCACC 744 consensus_2034#1 GAACACG----------------------------------------------------- 567 ******* consensus_2034#0 GGAAACGATCGATGACGTCCAGCAGACGGAAGGTGAAGCAGCCACACCCGACGCACCGGA 804 consensus_2034#1 ------------------------------------------------------------ consensus_2034#0 ACGACCNATGGGAAAGCCCCGCGATCGT 832 consensus_2034#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||