These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2037#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence [CCGCATCTACGGCACACAAATCTTTCCCCATTGCGGCAAAAGTACCTTTATTGTTTAACCGTAAAAGATGGGTAGAAAACGACATGCTGGCGCATCGGAGGAAACGGAGGGAGAGTACGATTTGCCAGCGAAACACATGAACACCAGCCACATCCGAGCGAACGAACGGCGGCTGATCATTGTGCTCGAAGGGGCTCAGCTTGAAACGGTCAAGGTGGGCCAAGTGTTTGAGCTGCTAAACTGTGACGATCACATCAACATACTGAGGAGGAACAAGCGCGACCCGGGAAGCTGCCGGCCCGACATAACGCACCAGTCGCTGTTGATGCTGATGGACTCGCCGCTAAACCGGGCCGGACTGTTGCAAGTGTTCGTGAAGACGGAAAAGAACGTTCTGATCGAAATAGATCCGCAAACGAGAATTCCGCGCACCTTCAAACGGTTTGCCGGTTTGATGGTGCAACTGCTGCACAAATTTTCCGTCAAGGCAGCCGATTCGGATAAGAAGCTGATGAGAATTATAAAAAATCCAATCAGCAACCATCTGCCTGTCGGGTGCAGAAAGATAGCGATGTCTTTCAGCGCCAGCGAGGTGAAGAACGCGAAGGAGCTTGGTGCCGGCGGCCAACGAACCGTTGACGCTGGTCGTTGGCGCGTTTGCGCACGGCAATCTGAACCTAGACTAT] [+] EMBL BM601659 [CCGCATCTACGGCACACAAATCTTTCCCCATTGCGGCAAAAGTACCTTTATTGTTTAACCGTAAAAGATGGGTAGAAAACGACATGCTGGCGCATCGGAGGAAACGGAGGGAGAGTACGATTTGCCAGCGAAACACATGAACACCAGCCACATCCGAGCGAACGAACGGCGGCTGATCATTGTGCTCGAAGGGGCTCAGCTTGAAACGGTCAAGGTGGGCCAAGTGTTTGAGCTGCTAAACTGTGACGATCACATCAACATACTGAGGAGGAACAAGCGCGACCCGGGAAGCTGCCGGCCCGACATAACGCACCAGTCGCTGTTGATGCTGATGGACTCGCCGCTAAACCGGGCCGGACTGTTGCAAGTGTTCGTGAAGACGGAAAAGAACGTTCTGATCGAAATAGATCCGCAAACGAGAATTCCGCGCACCTTCAAACGGTTTGCCGGTTTGATGGTGCAACTGCTGCACAAATTTTCCGTCAAGGCAGCCGATTCGGATAAGAAGCTGATGAGAATTATAAAAAATCCAATCAGCAACCATCTGCCTGTCGGGTGCAGAAAGATAGCGATGTCTTTCAGCGCCAGCGAGGTGAAGAACGCGAAGGAGCTTGGTGCCGGCGGCCAACGAACCGTTGACGCTGGTCGTTGGCGCGTTTGCGCACGGCAATCTGAACCTAGACTAT] consensusID : consensus_2037#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence [AGCTCAGGCAAGAATCGCCACGAGGTTAAATCTTTCCCCATTGCGGCAAAGTACCCTTTATTGTTTAACCGTAAAAGATGGGTAGAAAACGACATGCTGGCGCATCGGAGGAAACGGAGGGAGACGTACGATTTGCCAGCGAAACACATGNAACACCAGCCACATCCGAGCGAACGAACGGCGGCTGATCATTGTGCTCGAACGGGGCTCANGCTTGAAACGGTCAAGGTGGGCCAAGTGTTTGAGCTGCTAAACTGTGACGATCACATCAACATACTGAGGAGGAACAAGCGCGACCCGGGAAGCTGCCGGACCGACATAACGCACCAGTCGCTGTTGATGCTGATGGACTCGCCGCTAAACCGGGCCGGACTGTTGCAAGTGTTCGTGAACGACGGAAACAGGAACGTNCTGATCGAAATAGATCCGGAAGANGAGAATTCCGCGC] [+] EMBL BX466511 [AGCTCAGGCAAGAATCGCCACGAGGTTAAATCTTTCCCCATTGCGGCAAAGTACCCTTTATTGTTTAACCGTAAAAGATGGGTAGAAAACGACATGCTGGCGCATCGGAGGAAACGGAGGGAGACGTACGATTTGCCAGCGAAACACATGNAACACCAGCCACATCCGAGCGAACGAACGGCGGCTGATCATTGTGCTCGAACGGGGCTCANGCTTGAAACGGTCAAGGTGGGCCAAGTGTTTGAGCTGCTAAACTGTGACGATCACATCAACATACTGAGGAGGAACAAGCGCGACCCGGGAAGCTGCCGGACCGACATAACGCACCAGTCGCTGTTGATGCTGATGGACTCGCCGCTAAACCGGGCCGGACTGTTGCAAGTGTTCGTGAACGACGGAAACAGGAACGTNCTGATCGAAATAGATCCGGAAGANGAGAATTCCGCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2037#0 --------CCGCATCTACGGCACA--CAAATCTTTCCCCATTGCGGCAAAAGTACCTTTA 50 consensus_2037#1 AGCTCAGGCAAGAATCGCCACGAGGTTAAATCTTTCCCCATTGCGGCAAAGTACCCTTTA 60 * * * * *********************** ****** consensus_2037#0 TTGTTTAACCGTAAAAGATGGGTAGAAAACGACATGCTGGCGCATCGGAGGAAACGGAGG 110 consensus_2037#1 TTGTTTAACCGTAAAAGATGGGTAGAAAACGACATGCTGGCGCATCGGAGGAAACGGAGG 120 ************************************************************ consensus_2037#0 GAGA-GTACGATTTGCCAGCGAAACACATGAA-CACCAGCCACATCCGAGCGAACGAACG 168 consensus_2037#1 GAGACGTACGATTTGCCAGCGAAACACATGNAACACCAGCCACATCCGAGCGAACGAACG 180 **** ************************* * *************************** consensus_2037#0 GCGGCTGATCATTGTGCTCGAA-GGGGCTCAG-CTTGAAACGGTCAAGGTGGGCCAAGTG 226 consensus_2037#1 GCGGCTGATCATTGTGCTCGAACGGGGCTCANGCTTGAAACGGTCAAGGTGGGCCAAGTG 240 ********************** ******** *************************** consensus_2037#0 TTTGAGCTGCTAAACTGTGACGATCACATCAACATACTGAGGAGGAACAAGCGCGACCCG 286 consensus_2037#1 TTTGAGCTGCTAAACTGTGACGATCACATCAACATACTGAGGAGGAACAAGCGCGACCCG 300 ************************************************************ consensus_2037#0 GGAAGCTGCCGGCCCGACATAACGCACCAGTCGCTGTTGATGCTGATGGACTCGCCGCTA 346 consensus_2037#1 GGAAGCTGCCGGACCGACATAACGCACCAGTCGCTGTTGATGCTGATGGACTCGCCGCTA 360 ************ *********************************************** consensus_2037#0 AACCGGGCCGGACTGTTGCAAGTGTTCGTGAA-GACGGAAA--AGAACGTTCTGATCGAA 403 consensus_2037#1 AACCGGGCCGGACTGTTGCAAGTGTTCGTGAACGACGGAAACAGGAACGTNCTGATCGAA 420 ******************************** ******** ****** ********* consensus_2037#0 ATAGATCCGCAA-ACGAGAATTCCGCGCACCTTCAAACGGTTTGCCGGTTTGATGGTGCA 462 consensus_2037#1 ATAGATCCGGAAGANGAGAATTCCGCGC-------------------------------- 448 ********* ** * ************* consensus_2037#0 ACTGCTGCACAAATTTTCCGTCAAGGCAGCCGATTCGGATAAGAAGCTGATGAGAATTAT 522 consensus_2037#1 ------------------------------------------------------------ consensus_2037#0 AAAAAATCCAATCAGCAACCATCTGCCTGTCGGGTGCAGAAAGATAGCGATGTCTTTCAG 582 consensus_2037#1 ------------------------------------------------------------ consensus_2037#0 CGCCAGCGAGGTGAAGAACGCGAAGGAGCTTGGTGCCGGCGGCCAACGAACCGTTGACGC 642 consensus_2037#1 ------------------------------------------------------------ consensus_2037#0 TGGTCGTTGGCGCGTTTGCGCACGGCAATCTGAACCTAGACTAT 686 consensus_2037#1 -------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||