These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2069#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1071 fasta sequence [AGGCAGATTGCCCCGAGGATTAAAACAGACAGAGCTCCCGGCGATGGATCACACGCGCCAAAATTTCGCACTACGAGATATATCAATTATCTTTACAGAACTCGTTACCGACGCTGTTTCTTACGGGTTACAGGAAAGAACTGACAGGCCCGACACTACCAGCTAAGAGTAACGCTACCAGGGAACCGGGAATAGCCGTTTCGCGTACGGCTTATACGATCCAACAAAACAACCAACCAACAGATATNCCCCGTTTACGAACGGNTAGAACGGCGTTAGGTACTGTCCGTTTATTTTAAAACCTTTGANCGGTAAGCCTTGGTTCCTGTTTTGGCCCTACCGGTCTAATTACCACAACTGGGCACACGACCCGGCCGGCANGGGCAAAGCTAAACTATAGTCGCTNTACGTTGTAGACCGAGNCGGGTTCTCTATATTGAACCATTTGNATCCATGGTAAACCCCTTTGANCTTGGTCCCGGACGGCAGGCTTTTACGAAGACGGTGACACACAAACTTTTGGCTCTACACCGGGCTTGGNTCANGGATTCCCTTGGGGTTACATTCTTTACANAGCNCGCGCAACAAAGGAATTTTAGTGACCCTAATTCCGCANCACAACCCAGCNCCCTACCGCCTAACCCGGTNTACTACGCGAATTACTTCCCAACGGCACTTAATAATACANGCAGGCCCCGACAACGTTTNTCCAACAGNGCAATTCCAACTTGGGGGACACATNCCCAAAAAAGGGGGAATTTGNGCTATTGGACACAACTACTTTGGTTAAACAGGCGTAACNCCGATGGTTCCATNCCGACAAGCGCCCCCCGGGCNNCATAACTCAGNGGGNACGATNGAACCAGGAAATTANTGGCAACACCCCCAACCAACATATNCATCGCCTACACATGCNTAGCAACTAGTCGGAGCTCTAGGTATCNTGACCCCCCATTTCCGGCACGGATACCCGCAAACATCTCTAGGGAGCTGNGCACTACCNTTATACCACATNGGGCCATNCAGGGTNATTGTCNCCNNNANTNNCCACAACCCTNAACATAGGGGAAC] [+] EMBL AL695564 [AGGCAGATTGCCCCGAGGATTAAAACAGACAGAGCTCCCGGCGATGGATCACACGCGCCAAAATTTCGCACTACGAGATATATCAATTATCTTTACAGAACTCGTTACCGACGCTGTTTCTTACGGGTTACAGGAAAGAACTGACAGGCCCGACACTACCAGCTAAGAGTAACGCTACCAGGGAACCGGGAATAGCCGTTTCGCGTACGGCTTATACGATCCAACAAAACAACCAACCAACAGATATNCCCCGTTTACGAACGGNTAGAACGGCGTTAGGTACTGTCCGTTTATTTTAAAACCTTTGANCGGTAAGCCTTGGTTCCTGTTTTGGCCCTACCGGTCTAATTACCACAACTGGGCACACGACCCGGCCGGCANGGGCAAAGCTAAACTATAGTCGCTNTACGTTGTAGACCGAGNCGGGTTCTCTATATTGAACCATTTGNATCCATGGTAAACCCCTTTGANCTTGGTCCCGGACGGCAGGCTTTTACGAAGACGGTGACACACAAACTTTTGGCTCTACACCGGGCTTGGNTCANGGATTCCCTTGGGGTTACATTCTTTACANAGCNCGCGCAACAAAGGAATTTTAGTGACCCTAATTCCGCANCACAACCCAGCNCCCTACCGCCTAACCCGGTNTACTACGCGAATTACTTCCCAACGGCACTTAATAATACANGCAGGCCCCGACAACGTTTNTCCAACAGNGCAATTCCAACTTGGGGGACACATNCCCAAAAAAGGGGGAATTTGNGCTATTGGACACAACTACTTTGGTTAAACAGGCGTAACNCCGATGGTTCCATNCCGACAAGCGCCCCCCGGGCNNCATAACTCAGNGGGNACGATNGAACCAGGAAATTANTGGCAACACCCCCAACCAACATATNCATCGCCTACACATGCNTAGCAACTAGTCGGAGCTCTAGGTATCNTGACCCCCCATTTCCGGCACGGATACCCGCAAACATCTCTAGGGAGCTGNGCACTACCNTTATACCACATNGGGCCATNCAGGGTNATTGTCNCCNNNANTNNCCACAACCCTNAACATAGGGGAAC] consensusID : consensus_2069#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence [CAACCGATCGGGGAACTTGGTCAGCCCGAGCCCGGTGCAGGCCACGCGCGTCGTAATCGTTTTGCGCTCCGTGTTGTTCAGGTCGAAGTTGAGCCGGTCGAGCTCGCAGGTGCAGTTCTCCGGGCACTCGTCCTGCACGCGCTGGATCGTCTCCAGCTGGTGCAGCGGCAGGCTGTCGGTCGAGTTGAACCAGTTGAAGGTGCGGTTCGTCAGGCAGAACGTCGACTCGGGATCCTTAAACTTGACGCCGCTCTTGAGCGATTCGAGCAGCGACTTGCACAGCATGCCAACGTTTCCGCGTATGTCGAGTGAAACTAGCACAAGCTTAGAATTACAACAAATAATCTTTCCAAACAGTTATTACATTCAATTTACGTTTCAATCCGATTCAAAACAGATAGAGCTCCCGGCGATGGATCACACGCGCCAAAATTTCGCACTACGAGATATATCAATTATCTTTACAGAACTCGTTACCGACGCTGTTTCTTACGGGTTACAGGAAAGAACTGAC] [-] EMBL BX606432 [CAACCGATCGGGGAACTTGGTCAGCCCGAGCCCGGTGCAGGCCACGCGCGTCGTAATCGTTTTGCGCTCCGTGTTGTTCAGGTCGAAGTTGAGCCGGTCGAGCTCGCAGGTGCAGTTCTCCGGGCACTCGTCCTGCACGCGCTGGATCGTCTCCAGCTGGTGCAGCGGCAGGCTGTCGGTCGAGTTGAACCAGTTGAAGGTGCGGTTCGTCAGGCAGAACGTCGACTCGGGATCCTTAAACTTGACGCCGCTCTTGAGCGATTCGAGCAGCGACTTGCACAGCATGCCAACGTTTCCGCGTATGTCGAGTGAAACTAGCACAAGCTTAGAATTACAACAAATAATCTTTCCAAACAGTTATTACATTCAATTTACGTTTCAATCCGATTCAAAACAGATAGAGCTCCCGGCGATGGATCACACGCGCCAAAATTTCGCACTACGAGATATATCAATTATCTTTACAGAACTCGTTACCGACGCTGTTTCTTACGGGTTACAGGAAAGAACTGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2069#0 AGGCAGATTGCCCCGAGGATTAAAACAGACAGAGCTCCCGGCGATGGATCACACGCGCCA 60 consensus_2069#1 ------------------------------------------------------------ consensus_2069#0 AAATTTCGCACTACGAGATATATCAATTATCTTTACAGAACTCGTTACCGACGCTGTTTC 120 consensus_2069#1 ------------------------------------------------------------ consensus_2069#0 TTACGGGTTACAGGAAAGAACTGACAGGCCCGACACTACCAGCTAAGAGTAACGCTACCA 180 consensus_2069#1 ------------------------------------------------------------ consensus_2069#0 GGGAACCGGGAATAGCCGTTTCGCGTACGGCTTATACGATCCAACAAAACAACCAACCAA 240 consensus_2069#1 ------------------------------------------------------------ consensus_2069#0 CAGATATNCCCCGTTTACGAACGGNTAGAACGGCGTTAGGTACTGTCCGTTTATTTTAAA 300 consensus_2069#1 ---------------------------CAACCGATCGGGGAACT---TGGTCAGCCCGAG 30 *** * ** *** * * * * consensus_2069#0 ACCTTTGANCGGTAAGC-CTTGGTTCCTGTTTTGGCCCTACCGGTCTAATTACCACAACT 359 consensus_2069#1 CCCGGTGCAGGCCACGCGCGTCGTAATCGTTTTGCGCTCCGTGTTGTTCAGGTCGAAGTT 90 ** ** * * ** * * ** ****** * * * * * * * consensus_2069#0 GGGCACACGACCCGGCCGGCANGGGCAAAGCT--AAACTATAGTCGCTNTACGTTGTAGA 417 consensus_2069#1 GAGC---CGGTCGAGCTCGCAGGTGCAGTTCTCCGGGCACTCGTC-CTGCACGCGCTGGA 146 * ** ** * ** *** * *** ** * * *** ** *** * ** consensus_2069#0 CCGAGNCGGGTTCTCTATATTGAACCATTTGNATCCATGGTAAACCCCTTTGANCTTGGT 477 consensus_2069#1 TCGTCTCCAGCTGGTGCAGCGGCAGGCTGTCGGTCGA--GTTGAACCAGTTGAA---GGT 201 ** * * * * * * * ** * ** * ** **** *** consensus_2069#0 CCCGGACGGCAGGCTTTTACGAAGACGGTGACACACAAACTTTTGGCTCTACACCGGGCT 537 consensus_2069#1 GCGGTTCGTCAGGC-------AGAACGTCGACTCGGGATCCTTAAACTTGACGCCGCTCT 254 * * ** ***** * *** *** * * * ** ** ** *** ** consensus_2069#0 TGGNTCANGGATTCCCTTGGGGTTACATTCTTTACANA-GCNCGCGCAACAAAGGAATTT 596 consensus_2069#1 TGAGCGATTCGAGCAGC--GACTTGCACAGCATGCCAACGTTTCCGCGTATGTCGAGTGA 312 ** * * * ** ** * * * * *** ** * consensus_2069#0 TAGTGACCCTAATTCCGCANCACAACCCAGCNCCCTACCGCCTAACCCGGTNTACTACGC 656 consensus_2069#1 AACTAGCACAAGCTTAGAATTACAACAAATAATCTTTCC----AAACAGTTATTACATTC 368 * * * * * * * * ***** * * * ** ** * * * * * * consensus_2069#0 GAATTACTTCCCAACGGCACTTAATAATACANGCAGGCCCCGACAACGTTTNTCCAACAG 716 consensus_2069#1 AATTTACGTTTCAATCCGATTCAA-AACAGATAGAGCTCCCGGCGATGGATCACACGCGC 427 * **** * *** * * ** ** * * ** **** * * * * * * consensus_2069#0 NGCAATTCCAACTTGGGGGACACATNCCCAAAAAAGGGGGAATTTGNGCTATTGGACACA 776 consensus_2069#1 CAAAATTTCGCACTACGAGATATATCAATTATCTTTACAGAACT--CGTTACCG-ACGCT 484 **** * * * ** * ** * *** * * ** * ** * consensus_2069#0 ACTACTTTGGTTAAACAGGCGTAACNCCGATGGTTCCATNCCGACAAGCGCCCCCCGGGC 836 consensus_2069#1 GTTTCTTACGGGTTACAGG-AAAGAACTGAC----------------------------- 514 * *** * ***** * * ** consensus_2069#0 NNCATAACTCAGNGGGNACGATNGAACCAGGAAATTANTGGCAACACCCCCAACCAACAT 896 consensus_2069#1 ------------------------------------------------------------ consensus_2069#0 ATNCATCGCCTACACATGCNTAGCAACTAGTCGGAGCTCTAGGTATCNTGACCCCCCATT 956 consensus_2069#1 ------------------------------------------------------------ consensus_2069#0 TCCGGCACGGATACCCGCAAACATCTCTAGGGAGCTGNGCACTACCNTTATACCACATNG 1016 consensus_2069#1 ------------------------------------------------------------ consensus_2069#0 GGCCATNCAGGGTNATTGTCNCCNNNANTNNCCACAACCCTNAACATAGGGGAAC 1071 consensus_2069#1 ------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||