These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_208#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence [CCGCCCACGCGTCCGGTGCTAGTTTCTACCGAAAATGCGTACGCTAGCGGTTTTGTTTGCCGCCTTTCTGGCCGTTAACGCCAAGGTGTACTTTGAAGAAGGATTCAAAGACGATTCGTGGCAAAAGACCTGGGTCCAGAGCGAGCACAAGGGTGTCGAGTACGGTAAATTTGTGCACACTGCCGGAAAGTTCTACAATGATGCCGAAGCCGACAAAGGTCTGCAAACGTCGCAGGATGCCCGTTTCTACGCTCTGTCGAACAAGTTTACGCCGTTCTCGAACAAGGACGATACGCTCGTCATCCAGTTCTCCGTGAAGCACGAGCAGAACATTGACTGCGGCGGTGGCTACCTGAAGGTGTTCGACTGCTCCGTGGACCAGAAGGATCTGCACGGCGAGACGCCGTACCTGGTCATGTTCGGACCGGATATCTGCGGACCGGGCACGAAGAAGGTGCACGTGATCTTCAGCTACAAGGGCAAGAACCATCTGATCAACAAGGACATCCGCTGCAAGGACGACGTGTTCACCCACTTCTACACGCTGGTCGTGCGCGCCGACAACACGTACGAAGTGCTGATTGACAACGAGAAGGTTGAGTCGGGCAGCCTGGAGGATGACTGGGACTTCCTGCCGCCGAAGAAGATCAAGGATCCGGAAGCGAAGAAGCC] [+] EMBL BM594942 [CCGCCCACGCGTCCGGTGCTAGTTTCTACCGAAAATGCGTACGCTAGCGGTTTTGTTTGCCGCCTTTCTGGCCGTTAACGCCAAGGTGTACTTTGAAGAAGGATTCAAAGACGATTCGTGGCAAAAGACCTGGGTCCAGAGCGAGCACAAGGGTGTCGAGTACGGTAAATTTGTGCACACTGCCGGAAAGTTCTACAATGATGCCGAAGCCGACAAAGGTCTGCAAACGTCGCAGGATGCCCGTTTCTACGCTCTGTCGAACAAGTTTACGCCGTTCTCGAACAAGGACGATACGCTCGTCATCCAGTTCTCCGTGAAGCACGAGCAGAACATTGACTGCGGCGGTGGCTACCTGAAGGTGTTCGACTGCTCCGTGGACCAGAAGGATCTGCACGGCGAGACGCCGTACCTGGTCATGTTCGGACCGGATATCTGCGGACCGGGCACGAAGAAGGTGCACGTGATCTTCAGCTACAAGGGCAAGAACCATCTGATCAACAAGGACATCCGCTGCAAGGACGACGTGTTCACCCACTTCTACACGCTGGTCGTGCGCGCCGACAACACGTACGAAGTGCTGATTGACAACGAGAAGGTTGAGTCGGGCAGCCTGGAGGATGACTGGGACTTCCTGCCGCCGAAGAAGATCAAGGATCCGGAAGCGAAGAAGCC] consensusID : consensus_208#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 361 fasta sequence [AAATGAGGATTCAAAGAGAGAAAGAGAGGGGTTATAGTGACTTTGGAGGTGCTTTTATACGTAAGCAGCTTGAGCCGTTGTGTTTGAAAACGTTTATAGAAAGGTAAGGGATAAGGCGAGAGGATCAGTGCATATACATTCTCTCTATCTCTCAGTAGGACAATCGTGATATGGACAGGGAAATCCCTAATGCGTAATGCATCAGCAAAGTGACTGCTGTGTGGTGCCGCAATGTTTCACCTACTGTACTGCCCCTTCATGTCGAAGGGGTTCATGTTAGGNTCCATGACCAATGAAGGTAAAACACAAAACTCCCCGACCTTTCAACCGNTTCACATCGAGATAAGCGATGTGGNATCAT] [+] EMBL BX621175 [AAATGAGGATTCAAAGAGAGAAAGAGAGGGGTTATAGTGACTTTGGAGGTGCTTTTATACGTAAGCAGCTTGAGCCGTTGTGTTTGAAAACGTTTATAGAAAGGTAAGGGATAAGGCGAGAGGATCAGTGCATATACATTCTCTCTATCTCTCAGTAGGACAATCGTGATATGGACAGGGAAATCCCTAATGCGTAATGCATCAGCAAAGTGACTGCTGTGTGGTGCCGCAATGTTTCACCTACTGTACTGCCCCTTCATGTCGAAGGGGTTCATGTTAGGNTCCATGACCAATGAAGGTAAAACACAAAACTCCCCGACCTTTCAACCGNTTCACATCGAGATAAGCGATGTGGNATCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_208#0 CCGCCCACGCGTCCGGTGCTAGTTTCTACCGAAAATGCGTACGCTAGCGGTTTTGTTTGC 60 consensus_208#1 ------------------------------------------------------------ consensus_208#0 CGCCTTTCTGGCCGTTAACGCCAAGGTGTACTTTGAAGAAGGATTCAAAGACGATTCGTG 120 consensus_208#1 ----------------------------------AAATGAGGATTCAAAGA--------- 17 ** ************ consensus_208#0 GCAAAAGACCTGGGTCCAGAGCGAGCACAAGGGTGTCGAGTACGGTAAATTTGTGCACAC 180 consensus_208#1 GAGAAAGAGAGGGGTT-ATAGTGACTTTGGAGGTGC----TTTTATACGTAAGCAGCTTG 72 * ***** **** * ** ** **** * ** * * consensus_208#0 TGCCGGAAAGTTCTACAATGATGCCGAAGCCGACAAAGGTCTGCAAACGTCGCAGGATGC 240 consensus_208#1 AGCCGTTGTGTTTGAAAACGTTTATAGAAAGGTAAGGGAT-----AAGGCGAGAGGATCA 127 **** *** * ** * * * * * * * ** * ***** consensus_208#0 CCGTTTCTACGCTCTGTCGAACAAGTTTACGCCGTTCTCGAACAAGGACGATACGCTC-- 298 consensus_208#1 GTGCATATACATTCTCTC---------TATCTCTCAGTAGGACAATCGTGATATGGACAG 178 * * *** *** ** ** * * * **** **** * * consensus_208#0 GTCATCCAGTTCTCCGTGAAGCACGAGCAGAACATTGACTGCGGCG-GTGGCTAC-CTGA 356 consensus_208#1 GGAAATCCCTAATGCGTAATGCATCAGCAAAGTGACTGCTGTGTGGTGCCGCAATGTTTC 238 * * * * * *** * *** **** * *** * * * ** * * consensus_208#0 AGGTGTTCGACTGCTCCGTGGACCAGAAGGATCTGCACGGCGAGACGCCGTACCTGGTCA 416 consensus_208#1 ACCTACTGTACTGCCCCTTCATGTCGAAGGGGTT-CATG-TTAGGNTCCATGACCAATGA 296 * * * ***** ** * ***** * ** * ** ** * * * * consensus_208#0 TGTTCGGACCGGATATCTGCGGACCGGGCACGAAGAAGGTGCACGTGATCTTCAGCTACA 476 consensus_208#1 AGGTAAAACACAAAACTCCCCGACCTTTCA----ACCGNTTCACATCGAGATAAGCGATG 352 * * ** * * * **** ** * * *** * * *** * consensus_208#0 AGGGCAAGAACCATCTGATCAACAAGGACATCCGCTGCAAGGACGACGTGTTCACCCACT 536 consensus_208#1 TG-----GNATCAT---------------------------------------------- 361 * * * *** consensus_208#0 TCTACACGCTGGTCGTGCGCGCCGACAACACGTACGAAGTGCTGATTGACAACGAGAAGG 596 consensus_208#1 ------------------------------------------------------------ consensus_208#0 TTGAGTCGGGCAGCCTGGAGGATGACTGGGACTTCCTGCCGCCGAAGAAGATCAAGGATC 656 consensus_208#1 ------------------------------------------------------------ consensus_208#0 CGGAAGCGAAGAAGCC 672 consensus_208#1 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||