These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2088#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence [CCGAAACATTTCGCTTTTACGCACTTCGTCGGTCTCGAATTAGTGGCCAATACCACATGGCTCGGCTAGTAGCAATGGCCGATTACGACTGGAACGAGCAACACCGGCAGCAGGTCCTGCAAGGACGACAGATTCTAGAGCGCACCTCCGCCAGTCTGGCCCGATCGAATCAGATCGCCATCGAGACGGAACATACGGGTCATGAGGTAATAAACGAGCTTGAGGTGCAGCGAGAATCACTGCTGCGGAGCCAGCGCCGGCTGGAAAATGCCAACGATGATCTGAGCAAATCCGGCGCCATCATCCGTGCGATGAAAAGGAATGTGCTGTACAATAAGCTCATTCTCATCATGATCATCGTGATGGAGGTGGTCATTCTAGCGGGCATGATCGCGCTGAAGTTTATGTAGCGAACCTGCATTCCCTACAAGCTATATGCCAAAGCGTAAATGCATCAGAACGTGCCGCTATGGAAAGGGAAGAAAACGTTCCCTTGTCGTGCAATTTATTCGTGCAAAATTCGATACATTCAAAAGACCGCCTTTTCCCCTAGCAAGAAAAAAATTGTTAATCAGTTCACATTTATTGTATCCCTCTACAATACAATCCAATAGTATAAT] [+] EMBL BM583603 [CCGAAACATTTCGCTTTTACGCACTTCGTCGGTCTCGAATTAGTGGCCAATACCACATGGCTCGGCTAGTAGCAATGGCCGATTACGACTGGAACGAGCAACACCGGCAGCAGGTCCTGCAAGGACGACAGATTCTAGAGCGCACCTCCGCCAGTCTGGCCCGATCGAATCAGATCGCCATCGAGACGGAACATACGGGTCATGAGGTAATAAACGAGCTTGAGGTGCAGCGAGAATCACTGCTGCGGAGCCAGCGCCGGCTGGAAAATGCCAACGATGATCTGAGCAAATCCGGCGCCATCATCCGTGCGATGAAAAGGAATGTGCTGTACAATAAGCTCATTCTCATCATGATCATCGTGATGGAGGTGGTCATTCTAGCGGGCATGATCGCGCTGAAGTTTATGTAGCGAACCTGCATTCCCTACAAGCTATATGCCAAAGCGTAAATGCATCAGAACGTGCCGCTATGGAAAGGGAAGAAAACGTTCCCTTGTCGTGCAATTTATTCGTGCAAAATTCGATACATTCAAAAGACCGCCTTTTCCCCTAGCAAGAAAAAAATTGTTAATCAGTTCACATTTATTGTATCCCTCTACAATACAATCCAATAGTATAAT] consensusID : consensus_2088#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence [GGCAAGAATCGGCACGTGGAAACAAACAACAAAACATTTCGCTTTTACGCACTTCGTCGGTCTCGAATTAGTGGCCAATACCACATGGCTCGGCTAGTAGCAATGGCCGATTACGACTGGAACGAGCAACACCGGCAGCAGGTCCTGCAAGGACGACAGATTCTAGAGCGCACCTCCGCCAGTCTGGCCCGATCGAATCAGATCGCCATCGAGACGGAACATACGGGTCATGAGGTGAGTGTGCCGTGTACCGAATGTTCTACCCGAGGATGTGTCCACGGCTCTTCCCAACACCTTCCTTCTTTCCTGTGCTAGGTAATAAACGAGCTTGAGGTGCAGCGAGAATCACTGCTGCGGAGCCAGCGCCGGCTGGAAAATGCCAACGATGATCTGAGCAAATCCGGCGCCATCATCCGTGCGATGAAAAGGAATGTGCTGTACAATAAGCTCATTCTCATCATGATCATCGTGATGGAGGTGGTCATTCTAGCGGGCATGATCGCGCTGAAGTTTATGTAGCGAACCTGCATTCCCTACAAGCTATATGCCAAAGCGTAAATGCATCAGAACGTGCCGCTATGGAAAGGGAAGAA] [+] EMBL BX469869 [GGCAAGAATCGGCACGTGGAAACAAACAACAAAACATTTCGCTTTTACGCACTTCGTCGGTCTCGAATTAGTGGCCAATACCACATGGCTCGGCTAGTAGCAATGGCCGATTACGACTGGAACGAGCAACACCGGCAGCAGGTCCTGCAAGGACGACAGATTCTAGAGCGCACCTCCGCCAGTCTGGCCCGATCGAATCAGATCGCCATCGAGACGGAACATACGGGTCATGAGGTGAGTGTGCCGTGTACCGAATGTTCTACCCGAGGATGTGTCCACGGCTCTTCCCAACACCTTCCTTCTTTCCTGTGCTAGGTAATAAACGAGCTTGAGGTGCAGCGAGAATCACTGCTGCGGAGCCAGCGCCGGCTGGAAAATGCCAACGATGATCTGAGCAAATCCGGCGCCATCATCCGTGCGATGAAAAGGAATGTGCTGTACAATAAGCTCATTCTCATCATGATCATCGTGATGGAGGTGGTCATTCTAGCGGGCATGATCGCGCTGAAGTTTATGTAGCGAACCTGCATTCCCTACAAGCTATATGCCAAAGCGTAAATGCATCAGAACGTGCCGCTATGGAAAGGGAAGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2088#0 ----------------------------CCGAAACATTTCGCTTTTACGCACTTCGTCGG 32 consensus_2088#1 GGCAAGAATCGGCACGTGGAAACAAACAACAAAACATTTCGCTTTTACGCACTTCGTCGG 60 * ***************************** consensus_2088#0 TCTCGAATTAGTGGCCAATACCACATGGCTCGGCTAGTAGCAATGGCCGATTACGACTGG 92 consensus_2088#1 TCTCGAATTAGTGGCCAATACCACATGGCTCGGCTAGTAGCAATGGCCGATTACGACTGG 120 ************************************************************ consensus_2088#0 AACGAGCAACACCGGCAGCAGGTCCTGCAAGGACGACAGATTCTAGAGCGCACCTCCGCC 152 consensus_2088#1 AACGAGCAACACCGGCAGCAGGTCCTGCAAGGACGACAGATTCTAGAGCGCACCTCCGCC 180 ************************************************************ consensus_2088#0 AGTCTGGCCCGATCGAATCAGATCGCCATCGAGACGGAACATACGGGTCATGAGGT---- 208 consensus_2088#1 AGTCTGGCCCGATCGAATCAGATCGCCATCGAGACGGAACATACGGGTCATGAGGTGAGT 240 ******************************************************** consensus_2088#0 ------------------------------------------------------------ consensus_2088#1 GTGCCGTGTACCGAATGTTCTACCCGAGGATGTGTCCACGGCTCTTCCCAACACCTTCCT 300 consensus_2088#0 -----------------AATAAACGAGCTTGAGGTGCAGCGAGAATCACTGCTGCGGAGC 251 consensus_2088#1 TCTTTCCTGTGCTAGGTAATAAACGAGCTTGAGGTGCAGCGAGAATCACTGCTGCGGAGC 360 ******************************************* consensus_2088#0 CAGCGCCGGCTGGAAAATGCCAACGATGATCTGAGCAAATCCGGCGCCATCATCCGTGCG 311 consensus_2088#1 CAGCGCCGGCTGGAAAATGCCAACGATGATCTGAGCAAATCCGGCGCCATCATCCGTGCG 420 ************************************************************ consensus_2088#0 ATGAAAAGGAATGTGCTGTACAATAAGCTCATTCTCATCATGATCATCGTGATGGAGGTG 371 consensus_2088#1 ATGAAAAGGAATGTGCTGTACAATAAGCTCATTCTCATCATGATCATCGTGATGGAGGTG 480 ************************************************************ consensus_2088#0 GTCATTCTAGCGGGCATGATCGCGCTGAAGTTTATGTAGCGAACCTGCATTCCCTACAAG 431 consensus_2088#1 GTCATTCTAGCGGGCATGATCGCGCTGAAGTTTATGTAGCGAACCTGCATTCCCTACAAG 540 ************************************************************ consensus_2088#0 CTATATGCCAAAGCGTAAATGCATCAGAACGTGCCGCTATGGAAAGGGAAGAAAACGTTC 491 consensus_2088#1 CTATATGCCAAAGCGTAAATGCATCAGAACGTGCCGCTATGGAAAGGGAAGAA------- 593 ***************************************************** consensus_2088#0 CCTTGTCGTGCAATTTATTCGTGCAAAATTCGATACATTCAAAAGACCGCCTTTTCCCCT 551 consensus_2088#1 ------------------------------------------------------------ consensus_2088#0 AGCAAGAAAAAAATTGTTAATCAGTTCACATTTATTGTATCCCTCTACAATACAATCCAA 611 consensus_2088#1 ------------------------------------------------------------ consensus_2088#0 TAGTATAAT 620 consensus_2088#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||