cluster # 212

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Anopheles gambiae
cluster # 212 cluster # 212 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_212#0 length = 422 sequences # 1

consensus_212#1 length = 334 sequences # 1

consensusID : consensus_212#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 422
fasta sequence

                              [TTTTAGCTGTGTAGCTGAAGTAGTTCGTGTAAAACGATTTTCTTCAGCTTAAATATATTGTTTAAAGCTAAACCAAAACAACATCTACCGTTTTCCCAATATTAGCAATGGCTGCGTTTGTGGAACCTCACTTCGATGTCTGGACGCAGAGCGGTGGCAACATGTCCGTGGTGGACAAGGTCCCACCAGAGATGCTCCACATGGTGCATCCCCACTGGAACCAGTTCCCGCCCATGAACCCGCTGTGGCACTCGATCCTAGGTTTTGCCATCTTCATGCTCGGAATGATCTCGATGACCGGTAACGTTGTGTGATGTACATCTTCACCAACACCAAGTCACTCCGAACCCCCTCCAACTTGCTGGTGGTCAATCTGGCCTTCTCCGATTTCTTCATGATGTTCACGAGTTTCCCTCCTATTT]

[+] EMBL CNS08K3M             [TTTTAGCTGTGTAGCTGAAGTAGTTCGTGTAAAACGATTTTCTTCAGCTTAAATATATTGTTTAAAGCTAAACCAAAACAACATCTACCGTTTTCCCAATATTAGCAATGGCTGCGTTTGTGGAACCTCACTTCGATGTCTGGACGCAGAGCGGTGGCAACATGTCCGTGGTGGACAAGGTCCCACCAGAGATGCTCCACATGGTGCATCCCCACTGGAACCAGTTCCCGCCCATGAACCCGCTGTGGCACTCGATCCTAGGTTTTGCCATCTTCATGCTCGGAATGATCTCGATGACCGGTAACGTTGTGTGATGTACATCTTCACCAACACCAAGTCACTCCGAACCCCCTCCAACTTGCTGGTGGTCAATCTGGCCTTCTCCGATTTCTTCATGATGTTCACGAGTTTCCCTCCTATTT]




>consensus_212#0
TTTTAGCTGTGTAGCTGAAGTAGTTCGTGTAAAACGATTTTCTTCAGCTTAAATATATTG
TTTAAAGCTAAACCAAAACAACATCTACCGTTTTCCCAATATTAGCAATGGCTGCGTTTG
TGGAACCTCACTTCGATGTCTGGACGCAGAGCGGTGGCAACATGTCCGTGGTGGACAAGG
TCCCACCAGAGATGCTCCACATGGTGCATCCCCACTGGAACCAGTTCCCGCCCATGAACC
CGCTGTGGCACTCGATCCTAGGTTTTGCCATCTTCATGCTCGGAATGATCTCGATGACCG
GTAACGTTGTGTGATGTACATCTTCACCAACACCAAGTCACTCCGAACCCCCTCCAACTT
GCTGGTGGTCAATCTGGCCTTCTCCGATTTCTTCATGATGTTCACGAGTTTCCCTCCTAT
TT

consensusID : consensus_212#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 334
fasta sequence

                              [AATGTATTTCCTCACGAGCACACTTCACGAATAATCCTATGTAGCGTAATGAACTCTTCCGGCGTCCTGCCATTACTTCTTGCTAGGCTTCAGTGAGAAGTACAAGATCAACAACCCAATCGATGCGTAGGTGGCCTTCGCAACATTAGCGCGGCCCCGCATGGTTTCGCCATTAAAGAAACGGGAGAGTCCGGTAAGTTTGCTTTCATCACCACCACCAGCCATTTTGGAGTTATGTAATTATCACTGTTTATGCGAAGGAGTTGGAAAACAGCGAAAGATTTTCGTGAAGTCCAGTAGGCCAACAGTTCTCGAGGAATTCCGCGGCCCCCCC]

[+] EMBL CNS08I6S             [AATGTATTTCCTCACGAGCACACTTCACGAATAATCCTATGTAGCGTAATGAACTCTTCCGGCGTCCTGCCATTACTTCTTGCTAGGCTTCAGTGAGAAGTACAAGATCAACAACCCAATCGATGCGTAGGTGGCCTTCGCAACATTAGCGCGGCCCCGCATGGTTTCGCCATTAAAGAAACGGGAGAGTCCGGTAAGTTTGCTTTCATCACCACCACCAGCCATTTTGGAGTTATGTAATTATCACTGTTTATGCGAAGGAGTTGGAAAACAGCGAAAGATTTTCGTGAAGTCCAGTAGGCCAACAGTTCTCGAGGAATTCCGCGGCCCCCCC]




>consensus_212#1
AATGTATTTCCTCACGAGCACACTTCACGAATAATCCTATGTAGCGTAATGAACTCTTCC
GGCGTCCTGCCATTACTTCTTGCTAGGCTTCAGTGAGAAGTACAAGATCAACAACCCAAT
CGATGCGTAGGTGGCCTTCGCAACATTAGCGCGGCCCCGCATGGTTTCGCCATTAAAGAA
ACGGGAGAGTCCGGTAAGTTTGCTTTCATCACCACCACCAGCCATTTTGGAGTTATGTAA
TTATCACTGTTTATGCGAAGGAGTTGGAAAACAGCGAAAGATTTTCGTGAAGTCCAGTAG
GCCAACAGTTCTCGAGGAATTCCGCGGCCCCCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_212#0      TTTTAGCTGTGTAGCTGAAGTAGTTCGTGTAAAACGATTTTCTTCAGCTTAAATATATTG 60
consensus_212#1      --------------------------------AATGTATTTCCTCA---CGAGCACACT- 24
                                                     ** *  **** ***     *  * * * 

consensus_212#0      TTTAAAGCTAAACCAAAACAACATCTACCGTTTTCCCAATATTA-GCAATGGCTGCGTTT 119
consensus_212#1      -TCACGAATAATCCTATGTAGCGTAATGAACTCTTCCGGCGTCCTGCCATTACTTC--TT 81
                      * *    *** ** *   * * *       * * **    *   ** **  ** *  **

consensus_212#0      GTGGAACCTCACTTCGATGT-CTGGACGCAGAGCGGTGGCAACATGTCCGTGGTGGACAA 178
consensus_212#1      GCTAGGCTTCAGTGAGAAGTACAAGATCAACAACCCAATCGATGCGTA---GGTGGCCTT 138
                     *     * *** *  ** ** *  **   * * *     * *   **    ***** *  

consensus_212#0      GGTCCCACCAGAGATGCTCCACATGGTGCATCCCCACTGGAACCAGTTCCCGCCCATGAA 238
consensus_212#1      CGCAACATTAGCGCGGCCCCGCATGGTTTCGCCATTAAAGAAACGGGAGAGTCCGGTAAG 198
                      *   **  ** *  ** ** ******    **      *** * *      **  * * 

consensus_212#0      CCCGCTGTGGCACTCGATCCTAGGTTTTGCCATCTTCATGCTCGGAATGATCTCGATGAC 298
consensus_212#1      TTTGCT------TTCATCACCACCACCAGCCATTTT-------GGAGTTATGT-AATTAT 244
                        ***       **    * *      ***** **       *** * ** *  ** * 

consensus_212#0      CGGTAACGTTGTGTGATGTACATCTTCACCAACACCAAGTCACTCCGAACCCCCTCCAAC 358
consensus_212#1      CACTG--TTTATGCGAAGGAGTTGGAAAACAGCGAAAGATTTTCGTGAAG----TCCAGT 298
                     *  *    ** ** ** * *  *    * ** *   *  *      ***     ****  

consensus_212#0      TTGCTGGTGGTCAATCTGGCCTTCTCCGATTTCTTCATGATGTTCACGAGTTTCCCTCCT 418
consensus_212#1      AGGCCAACAGTTCTCGAGGAATTCCGCGGCCCCCCC------------------------ 334
                       **     **      **  ***  **    *  *                        

consensus_212#0      ATTT 422
consensus_212#1      ----