These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_213#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 873 fasta sequence [GCAGAATCCCCACGAGGAGATTCGCTCGTGGTAGTCACCGTCATTCTCGTGCGCGATCTAGAAAACCGTGAGGAAGACCTACTGAACTTCAGCACCGAACGAGTTACTCTAGAACTGCAACAATGTCGGAACGCGAAAATAACATCTACAAGGCGAAGCTGGCCGAACAGGCTGAGCGATACGATGAAATGGTCGAAGCCATGAAGAAGGTCGCCTCCATGGATGTGGAGCTGACGGTGGAGGAAAGAAATCTCCTGTCGGTGGCTTACAAAAACGTCATCGGTGCACGTCGTGCTTCTTGGCGGATAATCTCTTCGATAGAGCAGAAGGAAGAGAACAAGGGAGTGGAGGAGAAGCTGGAAATGATCAAGAACTACCGCTCACAGGTTGAGAAGGAACTGCGCGACATCTGCTCAGACATTCTCGAGGTGCTTGATAAGCATCTGATCCCGTGTGCAACGACCGGTGAAAGCAAGGTGTTTTACTACAAGATGAAGGGCGATTATCACCGCTATCTGGCTGAGTTTGCCACCGGTGGTGATCGTAAGGATGCCGCCGAGAAATTCGGCTCGTCGCGTACAAGGGCGTGCCAAGGTGAATAATCGCGAATGACTTGACCCTTTCCAGCCAAACGGCACCCCAATTTCGATTGGGGATTNGGGCTTTTGAACTTTCTCCAGTAATTTTACTTCATGAAAGTCCTGAACTCTCCGGGATCGTGCCTTGGACCGTCTAGACGNAAAGGCGGGAATTCGGACGGATTGGCCTATTTGGGCGNAACCTGGATANTCCTGGAGCCGAAGGAACAGGCTTCACAGAGGAATTNCAAGGGGCNTGAAGTATTGCAGGGTTGCATTCGGGGGACGAAACGTG] [+] EMBL BX467684 [GCAGAATCCCCACGAGGAGATTCGCTCGTGGTAGTCACCGTCATTCTCGTGCGCGATCTAGAAAACCGTGAGGAAGACCTACTGAACTTCAGCACCGAACGAGTTACTCTAGAACTGCAACAATGTCGGAACGCGAAAATAACATCTACAAGGCGAAGCTGGCCGAACAGGCTGAGCGATACGATGAAATGGTCGAAGCCATGAAGAAGGTCGCCTCCATGGATGTGGAGCTGACGGTGGAGGAAAGAAATCTCCTGTCGGTGGCTTACAAAAACGTCATCGGTGCACGTCGTGCTTCTTGGCGGATAATCTCTTCGATAGAGCAGAAGGAAGAGAACAAGGGAGTGGAGGAGAAGCTGGAAATGATCAAGAACTACCGCTCACAGGTTGAGAAGGAACTGCGCGACATCTGCTCAGACATTCTCGAGGTGCTTGATAAGCATCTGATCCCGTGTGCAACGACCGGTGAAAGCAAGGTGTTTTACTACAAGATGAAGGGCGATTATCACCGCTATCTGGCTGAGTTTGCCACCGGTGGTGATCGTAAGGATGCCGCCGAGAAATTCGGCTCGTCGCGTACAAGGGCGTGCCAAGGTGAATAATCGCGAATGACTTGACCCTTTCCAGCCAAACGGCACCCCAATTTCGATTGGGGATTNGGGCTTTTGAACTTTCTCCAGTAATTTTACTTCATGAAAGTCCTGAACTCTCCGGGATCGTGCCTTGGACCGTCTAGACGNAAAGGCGGGAATTCGGACGGATTGGCCTATTTGGGCGNAACCTGGATANTCCTGGAGCCGAAGGAACAGGCTTCACAGAGGAATTNCAAGGGGCNTGAAGTATTGCAGGGTTGCATTCGGGGGACGAAACGTG] consensusID : consensus_213#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence [GGCCGAGAATAATTTTGCATGGAATAATGGAACATGACCTCGGTCTGAGTGGTTTCGTTGGTTTGTAATAGACCAAGAGGTAATGATTAACAGAAGTAGTCGGGGGCATTGGTATTACGGCGCGAGAGGTGAAATTCGTAGACCGTCGTAGGACCCACAGAAGCGAAAGCGTTTGCCAAGGATGCTTTCATTAATCAAGAACGAAAGTTAGAGGATCGAAGGCGATTAGATACCGCCCTAGTTCTAACCGTAAACGATGCCAATTAGCAATTGGGAGACGCTACCTACCTTCGGGCGGTCTGCACAACGATGTGGCCCTACTGTTCCTTAACGCGCCCGTCGAACCGAACGAAAGCATCCAGACGGTGTGTCTGCCCCCGCAGGACATGGCGTTCAACCACGAGACGTGCTTTGCCAGCGGCTGGGGCAAGGACGTGTTCGGTAAGGCCGGCACGTACCAGGTCATCCTGAAGAAGATTGATCTGCCGGTCGTGCCGAACGATCAGTGCCAGACGGCGCTGCGCACCACGCGCCTCGGGCCCAAGTTTAACCTGCACAAGAGCTTCATCTGTGCGGGCGGTGTGCCCGGCAAGGATACGTGCAAGGGTGACGGCGGTTCGCCGCTCGTCTGTCCCATCCCGAACTCGCCCCACCACTACTACCAGACGGGGCTGGTCGCGTGGGGCATCG] [+] EMBL BX607494 [GGCCGAGAATAATTTTGCATGGAATAATGGAACATGACCTCGGTCTGAGTGGTTTCGTTGGTTTGTAATAGACCAAGAGGTAATGATTAACAGAAGTAGTCGGGGGCATTGGTATTACGGCGCGAGAGGTGAAATTCGTAGACCGTCGTAGGACCCACAGAAGCGAAAGCGTTTGCCAAGGATGCTTTCATTAATCAAGAACGAAAGTTAGAGGATCGAAGGCGATTAGATACCGCCCTAGTTCTAACCGTAAACGATGCCAATTAGCAATTGGGAGACGCTACCTACCTTCGGGCGGTCTGCACAACGATGTGGCCCTACTGTTCCTTAACGCGCCCGTCGAACCGAACGAAAGCATCCAGACGGTGTGTCTGCCCCCGCAGGACATGGCGTTCAACCACGAGACGTGCTTTGCCAGCGGCTGGGGCAAGGACGTGTTCGGTAAGGCCGGCACGTACCAGGTCATCCTGAAGAAGATTGATCTGCCGGTCGTGCCGAACGATCAGTGCCAGACGGCGCTGCGCACCACGCGCCTCGGGCCCAAGTTTAACCTGCACAAGAGCTTCATCTGTGCGGGCGGTGTGCCCGGCAAGGATACGTGCAAGGGTGACGGCGGTTCGCCGCTCGTCTGTCCCATCCCGAACTCGCCCCACCACTACTACCAGACGGGGCTGGTCGCGTGGGGCATCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_213#0 GCAGAATCCCCACGAGGAGATTCGCTCGTGGTAGTCACCGTCATTCTCGTGCGCGATCTA 60 consensus_213#1 ------------------------------------------------------------ consensus_213#0 GAAAACCGTGAGGAAGACCTACTGAACTTCAGCACCGAACGAGTTACTCTAGAACTGCAA 120 consensus_213#1 ---------------------------------------------------GGCCGAGAA 9 * * ** consensus_213#0 CAATGTCGGAACGCGAAA-ATAACATCTACAAGGCGAAGCTGGCCGAACAGGCTGAGCGA 179 consensus_213#1 TAATTTTGCATGGAATAATGGAACATGACCTCGGTCTGAGTGGTTTCGTTGGTTT-GTAA 68 *** * * * * ** ***** * ** *** ** * * * consensus_213#0 TACGATGAAATGGTCGAAGCCATGAAGAAGGTCGCCTCCATGGATGTGGAGCTGACGGTG 239 consensus_213#1 TAGACCAAGAGGTAATGATTAACAGAAGTAGTCGGGGGCATTGGTATTACGGCG-CGAGA 127 ** * * * * * * **** *** * * * * * ** consensus_213#0 GAGGAAAGAAATCTCCTGTCGGTGG-CTTACAAAAACGTCATCGGT-GCACGTCGTGCTT 297 consensus_213#1 GGTGAAATTCGTAGACCGTCGTAGGACCCACAGAAGCGAAAGCGTTTGCCAAGGATGCTT 187 * **** * * **** ** * *** ** ** * ** * ** ***** consensus_213#0 C--TTGGCGGATAATCTCTTCGATAGAGCAGAAGGAAGAGAACAAGGGAGTGGAGGAGAA 355 consensus_213#1 TCATTAATCAAGAACGAAAGTTAGAGGATCGAAGGC-GATTAGATACCGCCCTAGTTCTA 246 ** * ** * ** ***** ** * * ** * consensus_213#0 GCTGGAAATGATCAAGAACTACCGCTCACAGGTTGAGAAGGAACTGCGCGACATCTGCTC 415 consensus_213#1 ACCGTAAACGAT-GCCAATTAGCAATTGGGAGACGCTACCTACCTTCGGGCGGTCTGCAC 305 * * *** *** ** ** * * * * * * ** ** * ***** * consensus_213#0 A--GACATTCTCGAGGTGCTTGATAA-GCATCTGATCCCGTGTGCAACGACCG-GTGAAA 471 consensus_213#1 AACGATGTGGCCCTACTGTTCCTTAACGCGCCCG---TCGAACCGAACGAAAGCATCCAG 362 * ** * * ** * *** ** * * ** ***** * * * consensus_213#0 GCAAGGTGTTTTACTACAAGATGAAGGGCGATTATCACCGCTATCTGGCTGAGTTTGCCA 531 consensus_213#1 ACGGTGTGTCTGCCCCCGCAGGACATGGCGTTCA--ACCACGA---GACGTGCTTTGCCA 417 * **** * * * * **** * * *** * * * * ******* consensus_213#0 CCGGTGGTGATCGTAAGGATGCCGCCGAGAAATTCGGCTCGTCGCGTACAAGGGCGTGCC 591 consensus_213#1 GCGGCTGGG---GCAAGGACGTGTTCGGTAAGGCCGGC-----ACGTACCAGGTCATCCT 469 *** * * * ***** * ** ** **** ***** *** * * * consensus_213#0 AAGGTGAATAATCGCGAATGACTTGACCCTTTCCAGCCAAACGGCACCCCAATTTCGATT 651 consensus_213#1 GAAGAAGAT---------TGATCTG--CCGGTCGTGCCGAACGAT----CAGTGCCAGAC 514 * * ** *** ** ** ** *** **** ** * * consensus_213#0 GGGGATTNGGGCTTTTGAACTTTCTCCAGTAATTTTACTTCATGAAAGTCCTGAACTCTC 711 consensus_213#1 GGCGCTGCGCACCAC-GCGCCTCGGGCCCAAGTTTAACCTGCACAAGAGCTTCATCTGTG 573 ** * * * * * * * * * *** ** * ** * * * ** * consensus_213#0 CGGG-ATCGTGCCTTGGACCGTCTAGACGNAAAGG---CGGGAATTCG--GACGGATTGG 765 consensus_213#1 CGGGCGGTGTGCCCGGCAAGGA-TACGTGCAAGGGTGACGGCGGTTCGCCGCTCGTCTGT 632 **** ***** * * * ** * ** ** *** **** * * ** consensus_213#0 CCTATTTGGGCGNAACCTGGATANTCCTGGAGCCGAAGGAACAGGCTTCACAGAGGAATT 825 consensus_213#1 CCCATCCCGAACTCGCCCCACCACTACT--ACCAGACGGGGCTGGTCGCGTGG-GGCATC 689 ** ** * ** * * ** * * ** ** * ** * * ** ** consensus_213#0 NCAAGGGGCNTGAAGTATTGCAGGGTTGCATTCGGGGGACGAAACGTG 873 consensus_213#1 G----------------------------------------------- 690 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||