These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2131#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence [CCAGAATCGGCACGAGGCGGCGGCAGGTGTATTTGGCGGGCTATTTTTCCTCGTTATCGAAAGTTTGTGTTTTAGTTTTGTGCAATAAAACCGGTGTAGCAGTCGGTGCAACAGTCAGGCAATGAGCATGACGATGAACGCAAATCCGAACCGGAAGCGTTTGCGGTCCAACGAAAGCGACGGATGCTTTGCGCTGCAGCGCAAAACGTTCGTCAACCAGCAGATGATGGACCAGCAGGATCCGAACAAAATGAAGCGCATCCTGGCCAAAACTATCAGCTTGCTGTTCCAGGGTGCAAAGAACCAGGACAAAGAGTTGGTCATCGATCAGAAGGCGTCGCTGAAAGCCGTCCGTTTGCTTGGAAGCGGTGAAATAGACTACGATATGAATGCTACCTCCTCCTGGCTGGGAAAGAAGGCTGACCGGAAATGTCGCCAGTGCGACCGGATGTCGATCGTGCACGCCGACTGCACCAACTGCAATCTGGAGCTGTGCGAGTACTGTGGCATTAATTGTAACACTTGTCCGGAAAAGATCTGCCTCAACTGTGTCACAATATTTCACTGCGTGTCGCATGATTTGCCCTGCTGTGAGCAGTGTACAAATGTTTCTATGAAATTCTAGGCCCTAGGAGTGGGCAGGATAAACCATCCGGCCTCGTT] [+] EMBL BX469842 [CCAGAATCGGCACGAGGCGGCGGCAGGTGTATTTGGCGGGCTATTTTTCCTCGTTATCGAAAGTTTGTGTTTTAGTTTTGTGCAATAAAACCGGTGTAGCAGTCGGTGCAACAGTCAGGCAATGAGCATGACGATGAACGCAAATCCGAACCGGAAGCGTTTGCGGTCCAACGAAAGCGACGGATGCTTTGCGCTGCAGCGCAAAACGTTCGTCAACCAGCAGATGATGGACCAGCAGGATCCGAACAAAATGAAGCGCATCCTGGCCAAAACTATCAGCTTGCTGTTCCAGGGTGCAAAGAACCAGGACAAAGAGTTGGTCATCGATCAGAAGGCGTCGCTGAAAGCCGTCCGTTTGCTTGGAAGCGGTGAAATAGACTACGATATGAATGCTACCTCCTCCTGGCTGGGAAAGAAGGCTGACCGGAAATGTCGCCAGTGCGACCGGATGTCGATCGTGCACGCCGACTGCACCAACTGCAATCTGGAGCTGTGCGAGTACTGTGGCATTAATTGTAACACTTGTCCGGAAAAGATCTGCCTCAACTGTGTCACAATATTTCACTGCGTGTCGCATGATTTGCCCTGCTGTGAGCAGTGTACAAATGTTTCTATGAAATTCTAGGCCCTAGGAGTGGGCAGGATAAACCATCCGGCCTCGTT] consensusID : consensus_2131#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence [CGCAAGCAACAACACGGCGGCAGGTGTATTTGGCGGGCTATTTTTCCTCGTTATCGAAAGTTTGTGTTTTAGTTTTGTGCAATAAAACCGGTGTAGCAGTCGGTGCAACAGTCAGGCAATGAGCATGACGATGAACGCAAATCCGAACCGGAAGCGTTTGCGGTCCAACGAAAGCGACGGATGCTTTGCGCTGCAGCGCAAAACGTTCGTCAACCAGCAGATGATGGACCAGCAGGATCCGAACAAAATGAAGCGCATCCTGGCCAAAACTATCAGCTTGCTGTTCCAGGGTGCAAAGAACCAGGACAAAGAGTTGGTCATCGATCAGAAGGCGTCGCTGAAAGCCGTCCGTTTGCTTGGAAGCGGTGAAATAGACTACGATATGAATGCTACCTCCTCCTGGCTGGGAAAGAAGGCTGACCGGAAATGTCGCCAGTGCGACCGGATGTCGATCGTGCACGCCGACTGCACCAACTGCAATCTGGAGCTGTGCGAGTACTGTGGCATTAATTGTAACACTTGTCCGGAAAAGATCTGCCT] [+] EMBL BX628407 [CGCAAGCAACAACACGGCGGCAGGTGTATTTGGCGGGCTATTTTTCCTCGTTATCGAAAGTTTGTGTTTTAGTTTTGTGCAATAAAACCGGTGTAGCAGTCGGTGCAACAGTCAGGCAATGAGCATGACGATGAACGCAAATCCGAACCGGAAGCGTTTGCGGTCCAACGAAAGCGACGGATGCTTTGCGCTGCAGCGCAAAACGTTCGTCAACCAGCAGATGATGGACCAGCAGGATCCGAACAAAATGAAGCGCATCCTGGCCAAAACTATCAGCTTGCTGTTCCAGGGTGCAAAGAACCAGGACAAAGAGTTGGTCATCGATCAGAAGGCGTCGCTGAAAGCCGTCCGTTTGCTTGGAAGCGGTGAAATAGACTACGATATGAATGCTACCTCCTCCTGGCTGGGAAAGAAGGCTGACCGGAAATGTCGCCAGTGCGACCGGATGTCGATCGTGCACGCCGACTGCACCAACTGCAATCTGGAGCTGTGCGAGTACTGTGGCATTAATTGTAACACTTGTCCGGAAAAGATCTGCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2131#0 CCAGAATCGGCACGAGGCGGCGGCAGGTGTATTTGGCGGGCTATTTTTCCTCGTTATCGA 60 consensus_2131#1 -CGCAAGCAACA--ACACGGCGGCAGGTGTATTTGGCGGGCTATTTTTCCTCGTTATCGA 57 * ** * ** * ******************************************* consensus_2131#0 AAGTTTGTGTTTTAGTTTTGTGCAATAAAACCGGTGTAGCAGTCGGTGCAACAGTCAGGC 120 consensus_2131#1 AAGTTTGTGTTTTAGTTTTGTGCAATAAAACCGGTGTAGCAGTCGGTGCAACAGTCAGGC 117 ************************************************************ consensus_2131#0 AATGAGCATGACGATGAACGCAAATCCGAACCGGAAGCGTTTGCGGTCCAACGAAAGCGA 180 consensus_2131#1 AATGAGCATGACGATGAACGCAAATCCGAACCGGAAGCGTTTGCGGTCCAACGAAAGCGA 177 ************************************************************ consensus_2131#0 CGGATGCTTTGCGCTGCAGCGCAAAACGTTCGTCAACCAGCAGATGATGGACCAGCAGGA 240 consensus_2131#1 CGGATGCTTTGCGCTGCAGCGCAAAACGTTCGTCAACCAGCAGATGATGGACCAGCAGGA 237 ************************************************************ consensus_2131#0 TCCGAACAAAATGAAGCGCATCCTGGCCAAAACTATCAGCTTGCTGTTCCAGGGTGCAAA 300 consensus_2131#1 TCCGAACAAAATGAAGCGCATCCTGGCCAAAACTATCAGCTTGCTGTTCCAGGGTGCAAA 297 ************************************************************ consensus_2131#0 GAACCAGGACAAAGAGTTGGTCATCGATCAGAAGGCGTCGCTGAAAGCCGTCCGTTTGCT 360 consensus_2131#1 GAACCAGGACAAAGAGTTGGTCATCGATCAGAAGGCGTCGCTGAAAGCCGTCCGTTTGCT 357 ************************************************************ consensus_2131#0 TGGAAGCGGTGAAATAGACTACGATATGAATGCTACCTCCTCCTGGCTGGGAAAGAAGGC 420 consensus_2131#1 TGGAAGCGGTGAAATAGACTACGATATGAATGCTACCTCCTCCTGGCTGGGAAAGAAGGC 417 ************************************************************ consensus_2131#0 TGACCGGAAATGTCGCCAGTGCGACCGGATGTCGATCGTGCACGCCGACTGCACCAACTG 480 consensus_2131#1 TGACCGGAAATGTCGCCAGTGCGACCGGATGTCGATCGTGCACGCCGACTGCACCAACTG 477 ************************************************************ consensus_2131#0 CAATCTGGAGCTGTGCGAGTACTGTGGCATTAATTGTAACACTTGTCCGGAAAAGATCTG 540 consensus_2131#1 CAATCTGGAGCTGTGCGAGTACTGTGGCATTAATTGTAACACTTGTCCGGAAAAGATCTG 537 ************************************************************ consensus_2131#0 CCTCAACTGTGTCACAATATTTCACTGCGTGTCGCATGATTTGCCCTGCTGTGAGCAGTG 600 consensus_2131#1 CCT--------------------------------------------------------- 540 *** consensus_2131#0 TACAAATGTTTCTATGAAATTCTAGGCCCTAGGAGTGGGCAGGATAAACCATCCGGCCTC 660 consensus_2131#1 ------------------------------------------------------------ consensus_2131#0 GTT 663 consensus_2131#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||