These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2195#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [CCGCTGGCCAAGAATTTAAGCTTTTAGGCGCGGCCATCAACGTTCAAGTTCGGGGCTGTGTCCGCTAATCTGCCCAAGGCTGGCCCGGTATCCGCACAATCAAAACAGATAGCCGCGACACTGCATCATCCCCGATCAGAAATAGAAATAGCCAGCCGCCGCACACACACACAGTCAATCGACCGATCAACAGCAAGGGAGAAACATTTCCTGTCCGGGTGTGCGTGCGTGTGTGTGCTTTTTTTGTTCGTTTCTCACTCGTTTTTTTGATTTTCGTAACCGTGCAAAAAATGCGCTAGAAGAAAAATCAGCAGTGGAATAAGGGTTAAAAACGAATAAGGCAAAACGAGCCAATTAAAATATCGAACGAAAAAGGGCATCCTTCCTTTCCCGCCCCGAGCGGAGCGGGGCCGGTATTGGAGGGCGAAAAACGCATCTCCTGGAAACGCCCCAGCCTTTGATTGGCAGCCGCACCGCGCCCGAGCAACGATGAAGATCAACGAGAAAAACCTGTGCACGTTCGCGACGACGCCACCGGTCGACCTGGAGGGCTGGCTGAACAAGCGGGGCGAGATGAACAAAAGCTGGCAGCGGCGGTGGTTCGTGCTGAAGGGCAACCTGCTGTTCTACTTCGAGAAGCGCACCGATAAGGAACCGCTCGGCATGATCATCCTTGAGGGC] [+] EMBL BM600194 [CCGCTGGCCAAGAATTTAAGCTTTTAGGCGCGGCCATCAACGTTCAAGTTCGGGGCTGTGTCCGCTAATCTGCCCAAGGCTGGCCCGGTATCCGCACAATCAAAACAGATAGCCGCGACACTGCATCATCCCCGATCAGAAATAGAAATAGCCAGCCGCCGCACACACACACAGTCAATCGACCGATCAACAGCAAGGGAGAAACATTTCCTGTCCGGGTGTGCGTGCGTGTGTGTGCTTTTTTTGTTCGTTTCTCACTCGTTTTTTTGATTTTCGTAACCGTGCAAAAAATGCGCTAGAAGAAAAATCAGCAGTGGAATAAGGGTTAAAAACGAATAAGGCAAAACGAGCCAATTAAAATATCGAACGAAAAAGGGCATCCTTCCTTTCCCGCCCCGAGCGGAGCGGGGCCGGTATTGGAGGGCGAAAAACGCATCTCCTGGAAACGCCCCAGCCTTTGATTGGCAGCCGCACCGCGCCCGAGCAACGATGAAGATCAACGAGAAAAACCTGTGCACGTTCGCGACGACGCCACCGGTCGACCTGGAGGGCTGGCTGAACAAGCGGGGCGAGATGAACAAAAGCTGGCAGCGGCGGTGGTTCGTGCTGAAGGGCAACCTGCTGTTCTACTTCGAGAAGCGCACCGATAAGGAACCGCTCGGCATGATCATCCTTGAGGGC] consensusID : consensus_2195#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence [CCGAGTTAACTGGCCAAGAATTTAAGGTAACTGTCGAGCGAGTGTACCGCGCAACAAGAAAAAAAAGATAAATCCCGGCGCGGCCATCAACGTTCAAGTTCGGGGCTGTGTCCGCTAATCTGCCCAAGGCTGGCCCGGTATCCGCACAATCAAAACAGATAGCCGCGACACTGCATCATCCCCGATCAGAAATAGAAATAGCCAGCCGCCGCACACACACACAGTCAATCGACCGATCAACAGCAAGGGAGAAACATTTCCTGTCCGGGTGTGCGTGCGTGTGTGTGCTTTTTTTGTTCGTTTCTCACTCGTTTTTTTGATTTTCGTAACCGTGCAAAAAATGCGCTAGAAGAAAAATCAGCAGTGGAATAAGGGTTAAAAACGAATAAGGCAAAACGAGCCAATTAAAATATCGAACGAAAAAGGGCATCCTTCCTTTCCCGCCCCGAGCGGAGCGGGGCCGGTATTGGAGGGCGAAAAACGCATCTCCTGGAAACGCCCCAGCCTTTGATTGGCAGCCGCACCGCGCCCGAGCAACGATGAAGATCAACGAGAAAAACCTGTGCACGTTCGCGACGACGCCACCGGTCGACCTGGAGGGCTGGCTGAACAAGCGGGGCGAGATGAACAAAAG] [+] EMBL BM599581 [CCGAGTTAACTGGCCAAGAATTTAAGGTAACTGTCGAGCGAGTGTACCGCGCAACAAGAAAAAAAAGATAAATCCCGGCGCGGCCATCAACGTTCAAGTTCGGGGCTGTGTCCGCTAATCTGCCCAAGGCTGGCCCGGTATCCGCACAATCAAAACAGATAGCCGCGACACTGCATCATCCCCGATCAGAAATAGAAATAGCCAGCCGCCGCACACACACACAGTCAATCGACCGATCAACAGCAAGGGAGAAACATTTCCTGTCCGGGTGTGCGTGCGTGTGTGTGCTTTTTTTGTTCGTTTCTCACTCGTTTTTTTGATTTTCGTAACCGTGCAAAAAATGCGCTAGAAGAAAAATCAGCAGTGGAATAAGGGTTAAAAACGAATAAGGCAAAACGAGCCAATTAAAATATCGAACGAAAAAGGGCATCCTTCCTTTCCCGCCCCGAGCGGAGCGGGGCCGGTATTGGAGGGCGAAAAACGCATCTCCTGGAAACGCCCCAGCCTTTGATTGGCAGCCGCACCGCGCCCGAGCAACGATGAAGATCAACGAGAAAAACCTGTGCACGTTCGCGACGACGCCACCGGTCGACCTGGAGGGCTGGCTGAACAAGCGGGGCGAGATGAACAAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2195#0 ----------------------------------------------CCGCTGGCCAAGAA 14 consensus_2195#1 CCGAGTTAACTGGCCAAGAATTTAAGGTAACTGTCGAGCGAGTGTACCGCGCAACAAGAA 60 **** ****** consensus_2195#0 TTTAAGCTTTTA----GGCGCGGCCATCAACGTTCAAGTTCGGGGCTGTGTCCGCTAATC 70 consensus_2195#1 AAAAAAGATAAATCCCGGCGCGGCCATCAACGTTCAAGTTCGGGGCTGTGTCCGCTAATC 120 ** * * ******************************************** consensus_2195#0 TGCCCAAGGCTGGCCCGGTATCCGCACAATCAAAACAGATAGCCGCGACACTGCATCATC 130 consensus_2195#1 TGCCCAAGGCTGGCCCGGTATCCGCACAATCAAAACAGATAGCCGCGACACTGCATCATC 180 ************************************************************ consensus_2195#0 CCCGATCAGAAATAGAAATAGCCAGCCGCCGCACACACACACAGTCAATCGACCGATCAA 190 consensus_2195#1 CCCGATCAGAAATAGAAATAGCCAGCCGCCGCACACACACACAGTCAATCGACCGATCAA 240 ************************************************************ consensus_2195#0 CAGCAAGGGAGAAACATTTCCTGTCCGGGTGTGCGTGCGTGTGTGTGCTTTTTTTGTTCG 250 consensus_2195#1 CAGCAAGGGAGAAACATTTCCTGTCCGGGTGTGCGTGCGTGTGTGTGCTTTTTTTGTTCG 300 ************************************************************ consensus_2195#0 TTTCTCACTCGTTTTTTTGATTTTCGTAACCGTGCAAAAAATGCGCTAGAAGAAAAATCA 310 consensus_2195#1 TTTCTCACTCGTTTTTTTGATTTTCGTAACCGTGCAAAAAATGCGCTAGAAGAAAAATCA 360 ************************************************************ consensus_2195#0 GCAGTGGAATAAGGGTTAAAAACGAATAAGGCAAAACGAGCCAATTAAAATATCGAACGA 370 consensus_2195#1 GCAGTGGAATAAGGGTTAAAAACGAATAAGGCAAAACGAGCCAATTAAAATATCGAACGA 420 ************************************************************ consensus_2195#0 AAAAGGGCATCCTTCCTTTCCCGCCCCGAGCGGAGCGGGGCCGGTATTGGAGGGCGAAAA 430 consensus_2195#1 AAAAGGGCATCCTTCCTTTCCCGCCCCGAGCGGAGCGGGGCCGGTATTGGAGGGCGAAAA 480 ************************************************************ consensus_2195#0 ACGCATCTCCTGGAAACGCCCCAGCCTTTGATTGGCAGCCGCACCGCGCCCGAGCAACGA 490 consensus_2195#1 ACGCATCTCCTGGAAACGCCCCAGCCTTTGATTGGCAGCCGCACCGCGCCCGAGCAACGA 540 ************************************************************ consensus_2195#0 TGAAGATCAACGAGAAAAACCTGTGCACGTTCGCGACGACGCCACCGGTCGACCTGGAGG 550 consensus_2195#1 TGAAGATCAACGAGAAAAACCTGTGCACGTTCGCGACGACGCCACCGGTCGACCTGGAGG 600 ************************************************************ consensus_2195#0 GCTGGCTGAACAAGCGGGGCGAGATGAACAAAAGCTGGCAGCGGCGGTGGTTCGTGCTGA 610 consensus_2195#1 GCTGGCTGAACAAGCGGGGCGAGATGAACAAAAG-------------------------- 634 ********************************** consensus_2195#0 AGGGCAACCTGCTGTTCTACTTCGAGAAGCGCACCGATAAGGAACCGCTCGGCATGATCA 670 consensus_2195#1 ------------------------------------------------------------ consensus_2195#0 TCCTTGAGGGC 681 consensus_2195#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||