cluster # 2201

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Anopheles gambiae
cluster # 2201 cluster # 2201 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2201#0 length = 702 sequences # 1

consensus_2201#1 length = 462 sequences # 1

consensusID : consensus_2201#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 702
fasta sequence

                              [CCGGTGCATCAACCATTGTGCAAATGTGTATGCAAAAGTGCATAGTGGACGAGCACGGAACAGTTTTTCGGTAGTTTTGGGGCAAGTCCTCTATCCTTCATACACAAACACACATGGCATACAAATCTTGTTGCAAGCAAATCAACAAATAGTAAAAATACCGATATAGGAAATATGCAAATGGTAAGCAATGTTTTTTCAACGATGAATTTAAACAAACCACAAATACTCCGACGATTATATTAGTATGCGCAGTTGAGAGCAACACCGGAGCGTTAGTTGAGAAATAATAGCACAAAAGCAACAATAAGTTAAAATGTTTGAGCTAGCAAAAAGCAAAAAAAAAGCAAAGCAAAAAGAAAGAGACTTTTATCTAACTGTTCAGTGAATTCAACTTTTCTCAAAACTGCTGCTGCTACGGTACTGCTACAACGCGCGCACATTCTTCCGAGCAGAATCAAGATTTTTCAAACTGACATTTTCATCTCCAACTTTCTCCTCTGTGTAGAGTTGAGTATCTTGTTTGAAATCCCGTAACCTACTTTGAACTACTGTTACATATGACGCATGTGTAGTACATTTATGTAGTAACGCGTCCACCGAACCAGATAGAAATTTTACAAAGAAACCTCCACTTCACAGAAAAGCGCGCAAACGCAAAGATCCCGTTAGTTGAATGAAAAAAAAAATCAACCACAACCT]

[+] EMBL BM599546             [CCGGTGCATCAACCATTGTGCAAATGTGTATGCAAAAGTGCATAGTGGACGAGCACGGAACAGTTTTTCGGTAGTTTTGGGGCAAGTCCTCTATCCTTCATACACAAACACACATGGCATACAAATCTTGTTGCAAGCAAATCAACAAATAGTAAAAATACCGATATAGGAAATATGCAAATGGTAAGCAATGTTTTTTCAACGATGAATTTAAACAAACCACAAATACTCCGACGATTATATTAGTATGCGCAGTTGAGAGCAACACCGGAGCGTTAGTTGAGAAATAATAGCACAAAAGCAACAATAAGTTAAAATGTTTGAGCTAGCAAAAAGCAAAAAAAAAGCAAAGCAAAAAGAAAGAGACTTTTATCTAACTGTTCAGTGAATTCAACTTTTCTCAAAACTGCTGCTGCTACGGTACTGCTACAACGCGCGCACATTCTTCCGAGCAGAATCAAGATTTTTCAAACTGACATTTTCATCTCCAACTTTCTCCTCTGTGTAGAGTTGAGTATCTTGTTTGAAATCCCGTAACCTACTTTGAACTACTGTTACATATGACGCATGTGTAGTACATTTATGTAGTAACGCGTCCACCGAACCAGATAGAAATTTTACAAAGAAACCTCCACTTCACAGAAAAGCGCGCAAACGCAAAGATCCCGTTAGTTGAATGAAAAAAAAAATCAACCACAACCT]




>consensus_2201#0
CCGGTGCATCAACCATTGTGCAAATGTGTATGCAAAAGTGCATAGTGGACGAGCACGGAA
CAGTTTTTCGGTAGTTTTGGGGCAAGTCCTCTATCCTTCATACACAAACACACATGGCAT
ACAAATCTTGTTGCAAGCAAATCAACAAATAGTAAAAATACCGATATAGGAAATATGCAA
ATGGTAAGCAATGTTTTTTCAACGATGAATTTAAACAAACCACAAATACTCCGACGATTA
TATTAGTATGCGCAGTTGAGAGCAACACCGGAGCGTTAGTTGAGAAATAATAGCACAAAA
GCAACAATAAGTTAAAATGTTTGAGCTAGCAAAAAGCAAAAAAAAAGCAAAGCAAAAAGA
AAGAGACTTTTATCTAACTGTTCAGTGAATTCAACTTTTCTCAAAACTGCTGCTGCTACG
GTACTGCTACAACGCGCGCACATTCTTCCGAGCAGAATCAAGATTTTTCAAACTGACATT
TTCATCTCCAACTTTCTCCTCTGTGTAGAGTTGAGTATCTTGTTTGAAATCCCGTAACCT
ACTTTGAACTACTGTTACATATGACGCATGTGTAGTACATTTATGTAGTAACGCGTCCAC
CGAACCAGATAGAAATTTTACAAAGAAACCTCCACTTCACAGAAAAGCGCGCAAACGCAA
AGATCCCGTTAGTTGAATGAAAAAAAAAATCAACCACAACCT

consensusID : consensus_2201#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 462
fasta sequence

                              [AAAAAATTGCGTTCTGCAAATTCATCACGCCTCTGTGTTAGGATCCCCATTTCATTGAATTCTAACGCAACAACGACAATTATCCAATAATGTGTATGATCATCACATTGCTTCGGGCATTTATACCAATGGCCAAGCTGTAGTATCCCCTAATAATGGCAACAACATTGGTTCGCCTGCGGCACCATGTCGCCAACACTTGAAAAAGAGTCCGTTATAGATAGCAGAGATATTTAGCGTCTACGTAGGAGTGTTCCCCCTAATGTAAACAAAATCATACGTCAGTATTTTACTGCATTTAACTATCTTAACGTGACATACACAAACCAAGCCTAAGTGCATCAACCATTGTGCAAATGTATATGCAAAAGTGCATAGGGGGAACAGTTTTTCGGTAGTTTTGGGGCAAGTCCTCTATCCTTCATACACAAACACACATGGCATACAAATCTTGTTGCAAGC]

[+] EMBL BX614509             [AAAAAATTGCGTTCTGCAAATTCATCACGCCTCTGTGTTAGGATCCCCATTTCATTGAATTCTAACGCAACAACGACAATTATCCAATAATGTGTATGATCATCACATTGCTTCGGGCATTTATACCAATGGCCAAGCTGTAGTATCCCCTAATAATGGCAACAACATTGGTTCGCCTGCGGCACCATGTCGCCAACACTTGAAAAAGAGTCCGTTATAGATAGCAGAGATATTTAGCGTCTACGTAGGAGTGTTCCCCCTAATGTAAACAAAATCATACGTCAGTATTTTACTGCATTTAACTATCTTAACGTGACATACACAAACCAAGCCTAAGTGCATCAACCATTGTGCAAATGTATATGCAAAAGTGCATAGGGGGAACAGTTTTTCGGTAGTTTTGGGGCAAGTCCTCTATCCTTCATACACAAACACACATGGCATACAAATCTTGTTGCAAGC]




>consensus_2201#1
AAAAAATTGCGTTCTGCAAATTCATCACGCCTCTGTGTTAGGATCCCCATTTCATTGAAT
TCTAACGCAACAACGACAATTATCCAATAATGTGTATGATCATCACATTGCTTCGGGCAT
TTATACCAATGGCCAAGCTGTAGTATCCCCTAATAATGGCAACAACATTGGTTCGCCTGC
GGCACCATGTCGCCAACACTTGAAAAAGAGTCCGTTATAGATAGCAGAGATATTTAGCGT
CTACGTAGGAGTGTTCCCCCTAATGTAAACAAAATCATACGTCAGTATTTTACTGCATTT
AACTATCTTAACGTGACATACACAAACCAAGCCTAAGTGCATCAACCATTGTGCAAATGT
ATATGCAAAAGTGCATAGGGGGAACAGTTTTTCGGTAGTTTTGGGGCAAGTCCTCTATCC
TTCATACACAAACACACATGGCATACAAATCTTGTTGCAAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2201#0      CCGGTGCATCAACCATTGTGCAAATGTGTA-TGCAAAAGTGCATAGTGGACGAGCACGGA 59
consensus_2201#1      -----------------AAAAAATTGCGTTCTGCAAATTCATCACGCCTCTGTGTTAGGA 43
                                           ** ** **  ******        *     * *   ***

consensus_2201#0      ACAGTTTTTCGGT-AGTTTTGGGGCAAGTCCTCTATCCTTCATACACAAACACACATGGC 118
consensus_2201#1      TCCCCATTTCATTGAATTCTAACGCAA---CAACGACAATTATCCAATAATGTGTATGAT 100
                       *    ****  * * ** *   ****   *     *  * ** **  **     ***  

consensus_2201#0      ATACAAATCTTGTTGCAAGCAAATCAACAAATAGTAAAAATACCG-ATATAGGAAATATG 177
consensus_2201#1      CATCACAT--TGCTTCGGGCATTTATACCAATGGCCAAGCTGTAGTATCCCCTAATAATG 158
                         ** **  ** * *  ***  *  ** *** *  **  *   * **     **  ***

consensus_2201#0      CAAATGGTAAGCAATGTTTTTTCAACGATGAATTTAAACAAACCACAAATACTCCGACGA 237
consensus_2201#1      GCAAC----AACATTGGTTCGCCTGCGGCACCATGTCGCCAACACTTGAAAAAGAGTCCG 214
                        **     * ** ** **   *  **      *    * ***     * *    * *  

consensus_2201#0      TTATAT-TAGTATGCGCAGTTGAGAGCAACACCGGAGCGTTAGTTGAGAAATAATAGCAC 296
consensus_2201#1      TTATAGATAGCAGAGATATTTAGCGTCTACGTAGGAGTGTTCCCCCTAATGTAAACAAAA 274
                      *****  *** *     * **     * **   **** ***       *  ***    * 

consensus_2201#0      AAAAGCAACAATAAGTTAAAATGTTTGAGCTAGCAAAAAGCAAAAAAAA--AGCAAAGCA 354
consensus_2201#1      TCATACGTCAGTATTTTACTGCATTT-AACTATCTTAACGTGACATACACAAACCAAGCC 333
                        *  *  ** **  ***     *** * *** *  ** *  * * * *  * * **** 

consensus_2201#0      AAAAGAAAGAGACTTTTATCTAACTGTTCAGTGAATTCAACTTTTCTCAAAACTGCTGCT 414
consensus_2201#1      TAAGTGCATCAACCATTGTGCAAATGTAT-----ATGCAAAAGTGCATAGGGGGAACAGT 388
                       **    *   **  ** *  ** ***       ** ***   * *  *          *

consensus_2201#0      GCTACGGTACTGCTACAACGCGCGCACATTCTTCCGAGCAGAATCAAGATTTTTCAAACT 474
consensus_2201#1      TTTTCGGTAGTTTTGGGGCAAGTCCTCTATCCTTCATACACAAACAC-ACATGGCATACA 447
                        * ***** *  *    *  *  * *  ** * *   ** ** **  *  *  ** ** 

consensus_2201#0      GACATTTTCATCTCCAACTTTCTCCTCTGTGTAGAGTTGAGTATCTTGTTTGAAATCCCG 534
consensus_2201#1      AATCTTGTTGCAAGC--------------------------------------------- 462
                       *  ** *      *                                             

consensus_2201#0      TAACCTACTTTGAACTACTGTTACATATGACGCATGTGTAGTACATTTATGTAGTAACGC 594
consensus_2201#1      ------------------------------------------------------------
                                                                                  

consensus_2201#0      GTCCACCGAACCAGATAGAAATTTTACAAAGAAACCTCCACTTCACAGAAAAGCGCGCAA 654
consensus_2201#1      ------------------------------------------------------------
                                                                                  

consensus_2201#0      ACGCAAAGATCCCGTTAGTTGAATGAAAAAAAAAATCAACCACAACCT 702
consensus_2201#1      ------------------------------------------------