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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2210#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1004 fasta sequence
[GCTANGCAGAATGCCCCAGGTTATGGTGGCCACTGGGAAACAACACGCCGAAGATACTGTCGAAATCGTTCAACGAAACCGACACCGGCACGATCAAGCGCAACTCGCACGGTCCGAANAATATCAGGCACGCCCGCAGTCGAGATGGACGAGGACAAGTACTGACGGAAGCGGGCCGGTTCGTGCGAGTCGACGTGTTAAGGGCCGAACGTGGCTATTAGGGAAAAGTATNTAGAAGCGGAATTAGCTGATAGAAGAGAGNANAAAAAAAACACAGTTGCGTGTGTGGTACGCGTGTTTGTGTTTAAGGGGTTGTAAACTTGCGGCTTTTCCGGGNGCGGGGTTAAAGGCAATGTTTTGCCAATGGNCGGAATTGTTGTTTCCCATTAGGTTTTATTTTTATAATAAGGGAATTGAAGGCGAATGTTCTCCGGTAACCAACACAGAAAACCGGTAATCGAAAAAGCAAAACTTAGGTTTCTTAAAAGGCGGCGAAATGGGAGTTTCNCCCTTTTCCCGGGGGCGCAATTTTAAAACGCGTTTAATTTCCTTTTGTTGTACCCCAAAGGATTANCANGCGGACGGGTATCTTTTAAACCAGATCCTATTAAATACGGTGGTTAATTACAGTATTGCNGCGCAAACGGACAATGTGGGAGACACAGGGTAAAAAGAGAACGGGAAATAGAACACTATTAAGGCGAATATATAAGATAAAACCTGGGGNGGGATTTTAAAANAGCCCAATTTTTTATAGAGAAAAAACCAATTTTGGGGTTTAAAATGNGAGAGANAAAGAAAGCAGCATGTNGGTTNTCGGGGACCCAATTTGAGAAAATTTCATATAACCATCGGAGTGGCAGTCGGTCACAAAAAGGGTCAATTTGTTNTGGCGGTNGCAGGGTTCATTGNTNCACATTNGTAGAAAGGAGGGCGATAAAGAAGGGTAGGTCAAATAATTGNAGTAAAAACTAAACAACGTGTAGAGAAATGGGTATTTTAAG]
[+] EMBL AL696526 [GCTANGCAGAATGCCCCAGGTTATGGTGGCCACTGGGAAACAACACGCCGAAGATACTGTCGAAATCGTTCAACGAAACCGACACCGGCACGATCAAGCGCAACTCGCACGGTCCGAANAATATCAGGCACGCCCGCAGTCGAGATGGACGAGGACAAGTACTGACGGAAGCGGGCCGGTTCGTGCGAGTCGACGTGTTAAGGGCCGAACGTGGCTATTAGGGAAAAGTATNTAGAAGCGGAATTAGCTGATAGAAGAGAGNANAAAAAAAACACAGTTGCGTGTGTGGTACGCGTGTTTGTGTTTAAGGGGTTGTAAACTTGCGGCTTTTCCGGGNGCGGGGTTAAAGGCAATGTTTTGCCAATGGNCGGAATTGTTGTTTCCCATTAGGTTTTATTTTTATAATAAGGGAATTGAAGGCGAATGTTCTCCGGTAACCAACACAGAAAACCGGTAATCGAAAAAGCAAAACTTAGGTTTCTTAAAAGGCGGCGAAATGGGAGTTTCNCCCTTTTCCCGGGGGCGCAATTTTAAAACGCGTTTAATTTCCTTTTGTTGTACCCCAAAGGATTANCANGCGGACGGGTATCTTTTAAACCAGATCCTATTAAATACGGTGGTTAATTACAGTATTGCNGCGCAAACGGACAATGTGGGAGACACAGGGTAAAAAGAGAACGGGAAATAGAACACTATTAAGGCGAATATATAAGATAAAACCTGGGGNGGGATTTTAAAANAGCCCAATTTTTTATAGAGAAAAAACCAATTTTGGGGTTTAAAATGNGAGAGANAAAGAAAGCAGCATGTNGGTTNTCGGGGACCCAATTTGAGAAAATTTCATATAACCATCGGAGTGGCAGTCGGTCACAAAAAGGGTCAATTTGTTNTGGCGGTNGCAGGGTTCATTGNTNCACATTNGTAGAAAGGAGGGCGATAAAGAAGGGTAGGTCAAATAATTGNAGTAAAAACTAAACAACGTGTAGAGAAATGGGTATTTTAAG]
consensusID : consensus_2210#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 739 fasta sequence
[TACTGTCGAAATCGTTCAACGAAACCGACACCGCCACGATCAAGCGCAACTCGCACGGTCCGAACAATATCAGGCACGCCCGCCAGCTCGAGATGGACGAGGACAAGTACTGACGGAAGCGGCGCCGGTTCGTGCGAGTCGACGTGTTAAGGCCCGAACCGCTGGCCTATTAGGGGAAAAGTATTAGAAGCGGAATTAGCTGATAGAAGAAAAACAAAAAAACACAGTTGCGTGGTGGTACGCGTGTTTGTGTTAGGGTGTAACTGCCGCCTTTTCCGGGCGCGGGTTAAAGCAATGTTGCAATGCCGATGTGTGCCATTAGTTTTTTTTTATATAGGATGACGCGATGTCTCGTACACACGAACGTAACAAAACAAATAGTTCTAAGCGCAAGCATCCCTTCCCGCGCATCAACACCTTATCCTTGTCCCCAGCTTCCGCGCGTCTTAACATCTTTATAGTGTATAGTGGCGAAGGAAGGGAGACAGAAAACACGAAAGACTTAGCATTTAGTAGCTGTTGTTTTAAGCCATTTTAAGAAACATTGCGTAAGGAGAGAGAGAGCACTGCTTCGGCCCATGACAATCATACCGCGCGCGCAAAANGCATGTTGCGTGCGGNTCTGCTCATGTACAGTGCATAAGAGTAGCTCATATTGAGCAAACCTAGCAATGTAGAATGATTTTAAAGNTTAGCCTTATTTTGTAACCTATTAGCAAGAACACGGNTTGGCTGGATG]
[+] EMBL BX624080 [TACTGTCGAAATCGTTCAACGAAACCGACACCGCCACGATCAAGCGCAACTCGCACGGTCCGAACAATATCAGGCACGCCCGCCAGCTCGAGATGGACGAGGACAAGTACTGACGGAAGCGGCGCCGGTTCGTGCGAGTCGACGTGTTAAGGCCCGAACCGCTGGCCTATTAGGGGAAAAGTATTAGAAGCGGAATTAGCTGATAGAAGAAAAACAAAAAAACACAGTTGCGTGGTGGTACGCGTGTTTGTGTTAGGGTGTAACTGCCGCCTTTTCCGGGCGCGGGTTAAAGCAATGTTGCAATGCCGATGTGTGCCATTAGTTTTTTTTTATATAGGATGACGCGATGTCTCGTACACACGAACGTAACAAAACAAATAGTTCTAAGCGCAAGCATCCCTTCCCGCGCATCAACACCTTATCCTTGTCCCCAGCTTCCGCGCGTCTTAACATCTTTATAGTGTATAGTGGCGAAGGAAGGGAGACAGAAAACACGAAAGACTTAGCATTTAGTAGCTGTTGTTTTAAGCCATTTTAAGAAACATTGCGTAAGGAGAGAGAGAGCACTGCTTCGGCCCATGACAATCATACCGCGCGCGCAAAANGCATGTTGCGTGCGGNTCTGCTCATGTACAGTGCATAAGAGTAGCTCATATTGAGCAAACCTAGCAATGTAGAATGATTTTAAAGNTTAGCCTTATTTTGTAACCTATTAGCAAGAACACGGNTTGGCTGGATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2210#0 GCTANGCAGAATGCCCCAGGTTATGGTGGCCACTGGGAAACAACACGCCGAAGATACTGT 60
consensus_2210#1 ------------------------------------------------------TACTGT 6
******
consensus_2210#0 CGAAATCGTTCAACGAAACCGACACCGGCACGATCAAGCGCAACTCGCACGGTCCGAANA 120
consensus_2210#1 CGAAATCGTTCAACGAAACCGACACCGCCACGATCAAGCGCAACTCGCACGGTCCGAACA 66
*************************** ****************************** *
consensus_2210#0 ATATCAGGCACGCCCGCAG--TCGAGATGGACGAGGACAAGTACTGACGGAAGCGG-GCC 177
consensus_2210#1 ATATCAGGCACGCCCGCCAGCTCGAGATGGACGAGGACAAGTACTGACGGAAGCGGCGCC 126
***************** *********************************** ***
consensus_2210#0 GGTTCGTGCGAGTCGACGTGTTAAGGGCCGAACG--TGGC-TATTAGGGAAAAGTATNTA 234
consensus_2210#1 GGTTCGTGCGAGTCGACGTGTTAAGGCCCGAACCGCTGGCCTATTAGGGGAAAAGTATTA 186
************************** ****** **** ******** *** **
consensus_2210#0 GAAGCGGAATTAGCTGATAGAAGAGAGNANAAAAAAAACACAGTTGCGTGTGTGGTACGC 294
consensus_2210#1 GAAGCGGAATTAGCTGATAGAAGAA--AAACAAAAAAACACAGTTGCGTG-GTGGTACGC 243
************************ * ******************* *********
consensus_2210#0 GTGTTTGTGTTTAAGGGGTTGTAAACTTGCGGCTTTTCCGGGNGCGGGGTTAAAGGCAAT 354
consensus_2210#1 GTGTTTGTGTT----AGGGTGTAA-CTGCCGCCTTTTCCGGGCGCGGGTT--AAAGCAAT 296
*********** ** ***** ** ** ********** ***** * ** *****
consensus_2210#0 GTTTTGCCAATGGNCGGAATTGTTGTTTCCCATTAGGTTTTATTTTTATAATAAGGGAAT 414
consensus_2210#1 GTT----------GCAATGCCGATGTGTGCCATTAGTTTTTTTTTATATAGGATG----- 341
*** * * *** * ******* **** *** **** * *
consensus_2210#0 TGAAGGCGAATGTTCTCCGGTAACCAACACAG-AAAACCGGTAATCGAAAAAGCAAAACT 473
consensus_2210#1 ---ACGCGA-TGTCTCGTACACACGAACGTAACAAAACAAATAGTTCTAAGCGCAAGC-- 395
* **** *** ** *** * ***** ** * ** ****
consensus_2210#0 TAGGTTTCTTAAAAGGCGGCGAAATGGGAGTTTCNCCCTTTTCCCGGGGGCGCAATTTTA 533
consensus_2210#1 ---ATCCCTTCCCGCGCATCAACAC------CTTATCCTTGTCCC-------CAGCTTCC 439
* *** ** * * * * **** **** ** **
consensus_2210#0 AAACGCGTTTAATTTCCTTTTGTTGTACCCCAAAGGATTANCANGCGGACGGGTATCTTT 593
consensus_2210#1 GCGCGT-CTTAACATCTTTATAGTGTATAGTGGCGAA--GGAAGGGAGACAGA------- 489
** **** ** ** * **** * * * * *** *
consensus_2210#0 TAAACCAGATCCTATTAAATACGGTGGTTAATTACAGTATTGCNGCGCAAACGGACAATG 653
consensus_2210#1 -AAACACGAA------AGACTTAGCATTTAGTAGCTGTTGTTTTAAGC-------CATTT 535
**** ** * * * *** * * ** * ** ** *
consensus_2210#0 TGGGAGACACAGGGTAAAAAGAGAACGGGAAATAGAACACTATTAAGGCGAATATATAAG 713
consensus_2210#1 TAAGAAACATTGCGTAAGGAGAGAG--------AGAGCACTGCTTCGGCCCATG---ACA 584
* ** *** * **** ***** *** **** * *** ** *
consensus_2210#0 ATAAAACCTGGGGNGGGATTTTAAAANAGCCCAATTTTTTATAGAGAAAAAACCAATTTT 773
consensus_2210#1 ATCATACCGCGCGCGCAAAANGCATGTTGCGTGCGGNTCTGCTCATGTACAGTGCATAAG 644
** * *** * * * * * ** * * * * * **
consensus_2210#0 GG-GGTTTAAAATGNGAGAGANAAAGAAAGCAGCATGTNGGTTNTCGGGGACCCAATTTG 832
consensus_2210#1 AGTAGCTCATATTGAGCAAACCTAGCAATGTAGAATGATTTTAAAGNTTAGCCTTATTTT 704
* * * * * ** * * * ** * ** *** * ** ****
consensus_2210#0 AGAAAATTTCATATAACCATCGGAGTGGCAGTCGGTCACAAAAAGGGTCAATTTGTTNTG 892
consensus_2210#1 GTAACCTATTAGCAAGAACACGGNTTGGCTGGATG------------------------- 739
** * * * * *** **** * *
consensus_2210#0 GCGGTNGCAGGGTTCATTGNTNCACATTNGTAGAAAGGAGGGCGATAAAGAAGGGTAGGT 952
consensus_2210#1 ------------------------------------------------------------
consensus_2210#0 CAAATAATTGNAGTAAAAACTAAACAACGTGTAGAGAAATGGGTATTTTAAG 1004
consensus_2210#1 ----------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||