These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2210#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1004 fasta sequence [GCTANGCAGAATGCCCCAGGTTATGGTGGCCACTGGGAAACAACACGCCGAAGATACTGTCGAAATCGTTCAACGAAACCGACACCGGCACGATCAAGCGCAACTCGCACGGTCCGAANAATATCAGGCACGCCCGCAGTCGAGATGGACGAGGACAAGTACTGACGGAAGCGGGCCGGTTCGTGCGAGTCGACGTGTTAAGGGCCGAACGTGGCTATTAGGGAAAAGTATNTAGAAGCGGAATTAGCTGATAGAAGAGAGNANAAAAAAAACACAGTTGCGTGTGTGGTACGCGTGTTTGTGTTTAAGGGGTTGTAAACTTGCGGCTTTTCCGGGNGCGGGGTTAAAGGCAATGTTTTGCCAATGGNCGGAATTGTTGTTTCCCATTAGGTTTTATTTTTATAATAAGGGAATTGAAGGCGAATGTTCTCCGGTAACCAACACAGAAAACCGGTAATCGAAAAAGCAAAACTTAGGTTTCTTAAAAGGCGGCGAAATGGGAGTTTCNCCCTTTTCCCGGGGGCGCAATTTTAAAACGCGTTTAATTTCCTTTTGTTGTACCCCAAAGGATTANCANGCGGACGGGTATCTTTTAAACCAGATCCTATTAAATACGGTGGTTAATTACAGTATTGCNGCGCAAACGGACAATGTGGGAGACACAGGGTAAAAAGAGAACGGGAAATAGAACACTATTAAGGCGAATATATAAGATAAAACCTGGGGNGGGATTTTAAAANAGCCCAATTTTTTATAGAGAAAAAACCAATTTTGGGGTTTAAAATGNGAGAGANAAAGAAAGCAGCATGTNGGTTNTCGGGGACCCAATTTGAGAAAATTTCATATAACCATCGGAGTGGCAGTCGGTCACAAAAAGGGTCAATTTGTTNTGGCGGTNGCAGGGTTCATTGNTNCACATTNGTAGAAAGGAGGGCGATAAAGAAGGGTAGGTCAAATAATTGNAGTAAAAACTAAACAACGTGTAGAGAAATGGGTATTTTAAG] [+] EMBL AL696526 [GCTANGCAGAATGCCCCAGGTTATGGTGGCCACTGGGAAACAACACGCCGAAGATACTGTCGAAATCGTTCAACGAAACCGACACCGGCACGATCAAGCGCAACTCGCACGGTCCGAANAATATCAGGCACGCCCGCAGTCGAGATGGACGAGGACAAGTACTGACGGAAGCGGGCCGGTTCGTGCGAGTCGACGTGTTAAGGGCCGAACGTGGCTATTAGGGAAAAGTATNTAGAAGCGGAATTAGCTGATAGAAGAGAGNANAAAAAAAACACAGTTGCGTGTGTGGTACGCGTGTTTGTGTTTAAGGGGTTGTAAACTTGCGGCTTTTCCGGGNGCGGGGTTAAAGGCAATGTTTTGCCAATGGNCGGAATTGTTGTTTCCCATTAGGTTTTATTTTTATAATAAGGGAATTGAAGGCGAATGTTCTCCGGTAACCAACACAGAAAACCGGTAATCGAAAAAGCAAAACTTAGGTTTCTTAAAAGGCGGCGAAATGGGAGTTTCNCCCTTTTCCCGGGGGCGCAATTTTAAAACGCGTTTAATTTCCTTTTGTTGTACCCCAAAGGATTANCANGCGGACGGGTATCTTTTAAACCAGATCCTATTAAATACGGTGGTTAATTACAGTATTGCNGCGCAAACGGACAATGTGGGAGACACAGGGTAAAAAGAGAACGGGAAATAGAACACTATTAAGGCGAATATATAAGATAAAACCTGGGGNGGGATTTTAAAANAGCCCAATTTTTTATAGAGAAAAAACCAATTTTGGGGTTTAAAATGNGAGAGANAAAGAAAGCAGCATGTNGGTTNTCGGGGACCCAATTTGAGAAAATTTCATATAACCATCGGAGTGGCAGTCGGTCACAAAAAGGGTCAATTTGTTNTGGCGGTNGCAGGGTTCATTGNTNCACATTNGTAGAAAGGAGGGCGATAAAGAAGGGTAGGTCAAATAATTGNAGTAAAAACTAAACAACGTGTAGAGAAATGGGTATTTTAAG] consensusID : consensus_2210#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 739 fasta sequence [TACTGTCGAAATCGTTCAACGAAACCGACACCGCCACGATCAAGCGCAACTCGCACGGTCCGAACAATATCAGGCACGCCCGCCAGCTCGAGATGGACGAGGACAAGTACTGACGGAAGCGGCGCCGGTTCGTGCGAGTCGACGTGTTAAGGCCCGAACCGCTGGCCTATTAGGGGAAAAGTATTAGAAGCGGAATTAGCTGATAGAAGAAAAACAAAAAAACACAGTTGCGTGGTGGTACGCGTGTTTGTGTTAGGGTGTAACTGCCGCCTTTTCCGGGCGCGGGTTAAAGCAATGTTGCAATGCCGATGTGTGCCATTAGTTTTTTTTTATATAGGATGACGCGATGTCTCGTACACACGAACGTAACAAAACAAATAGTTCTAAGCGCAAGCATCCCTTCCCGCGCATCAACACCTTATCCTTGTCCCCAGCTTCCGCGCGTCTTAACATCTTTATAGTGTATAGTGGCGAAGGAAGGGAGACAGAAAACACGAAAGACTTAGCATTTAGTAGCTGTTGTTTTAAGCCATTTTAAGAAACATTGCGTAAGGAGAGAGAGAGCACTGCTTCGGCCCATGACAATCATACCGCGCGCGCAAAANGCATGTTGCGTGCGGNTCTGCTCATGTACAGTGCATAAGAGTAGCTCATATTGAGCAAACCTAGCAATGTAGAATGATTTTAAAGNTTAGCCTTATTTTGTAACCTATTAGCAAGAACACGGNTTGGCTGGATG] [+] EMBL BX624080 [TACTGTCGAAATCGTTCAACGAAACCGACACCGCCACGATCAAGCGCAACTCGCACGGTCCGAACAATATCAGGCACGCCCGCCAGCTCGAGATGGACGAGGACAAGTACTGACGGAAGCGGCGCCGGTTCGTGCGAGTCGACGTGTTAAGGCCCGAACCGCTGGCCTATTAGGGGAAAAGTATTAGAAGCGGAATTAGCTGATAGAAGAAAAACAAAAAAACACAGTTGCGTGGTGGTACGCGTGTTTGTGTTAGGGTGTAACTGCCGCCTTTTCCGGGCGCGGGTTAAAGCAATGTTGCAATGCCGATGTGTGCCATTAGTTTTTTTTTATATAGGATGACGCGATGTCTCGTACACACGAACGTAACAAAACAAATAGTTCTAAGCGCAAGCATCCCTTCCCGCGCATCAACACCTTATCCTTGTCCCCAGCTTCCGCGCGTCTTAACATCTTTATAGTGTATAGTGGCGAAGGAAGGGAGACAGAAAACACGAAAGACTTAGCATTTAGTAGCTGTTGTTTTAAGCCATTTTAAGAAACATTGCGTAAGGAGAGAGAGAGCACTGCTTCGGCCCATGACAATCATACCGCGCGCGCAAAANGCATGTTGCGTGCGGNTCTGCTCATGTACAGTGCATAAGAGTAGCTCATATTGAGCAAACCTAGCAATGTAGAATGATTTTAAAGNTTAGCCTTATTTTGTAACCTATTAGCAAGAACACGGNTTGGCTGGATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2210#0 GCTANGCAGAATGCCCCAGGTTATGGTGGCCACTGGGAAACAACACGCCGAAGATACTGT 60 consensus_2210#1 ------------------------------------------------------TACTGT 6 ****** consensus_2210#0 CGAAATCGTTCAACGAAACCGACACCGGCACGATCAAGCGCAACTCGCACGGTCCGAANA 120 consensus_2210#1 CGAAATCGTTCAACGAAACCGACACCGCCACGATCAAGCGCAACTCGCACGGTCCGAACA 66 *************************** ****************************** * consensus_2210#0 ATATCAGGCACGCCCGCAG--TCGAGATGGACGAGGACAAGTACTGACGGAAGCGG-GCC 177 consensus_2210#1 ATATCAGGCACGCCCGCCAGCTCGAGATGGACGAGGACAAGTACTGACGGAAGCGGCGCC 126 ***************** *********************************** *** consensus_2210#0 GGTTCGTGCGAGTCGACGTGTTAAGGGCCGAACG--TGGC-TATTAGGGAAAAGTATNTA 234 consensus_2210#1 GGTTCGTGCGAGTCGACGTGTTAAGGCCCGAACCGCTGGCCTATTAGGGGAAAAGTATTA 186 ************************** ****** **** ******** *** ** consensus_2210#0 GAAGCGGAATTAGCTGATAGAAGAGAGNANAAAAAAAACACAGTTGCGTGTGTGGTACGC 294 consensus_2210#1 GAAGCGGAATTAGCTGATAGAAGAA--AAACAAAAAAACACAGTTGCGTG-GTGGTACGC 243 ************************ * ******************* ********* consensus_2210#0 GTGTTTGTGTTTAAGGGGTTGTAAACTTGCGGCTTTTCCGGGNGCGGGGTTAAAGGCAAT 354 consensus_2210#1 GTGTTTGTGTT----AGGGTGTAA-CTGCCGCCTTTTCCGGGCGCGGGTT--AAAGCAAT 296 *********** ** ***** ** ** ********** ***** * ** ***** consensus_2210#0 GTTTTGCCAATGGNCGGAATTGTTGTTTCCCATTAGGTTTTATTTTTATAATAAGGGAAT 414 consensus_2210#1 GTT----------GCAATGCCGATGTGTGCCATTAGTTTTTTTTTATATAGGATG----- 341 *** * * *** * ******* **** *** **** * * consensus_2210#0 TGAAGGCGAATGTTCTCCGGTAACCAACACAG-AAAACCGGTAATCGAAAAAGCAAAACT 473 consensus_2210#1 ---ACGCGA-TGTCTCGTACACACGAACGTAACAAAACAAATAGTTCTAAGCGCAAGC-- 395 * **** *** ** *** * ***** ** * ** **** consensus_2210#0 TAGGTTTCTTAAAAGGCGGCGAAATGGGAGTTTCNCCCTTTTCCCGGGGGCGCAATTTTA 533 consensus_2210#1 ---ATCCCTTCCCGCGCATCAACAC------CTTATCCTTGTCCC-------CAGCTTCC 439 * *** ** * * * * **** **** ** ** consensus_2210#0 AAACGCGTTTAATTTCCTTTTGTTGTACCCCAAAGGATTANCANGCGGACGGGTATCTTT 593 consensus_2210#1 GCGCGT-CTTAACATCTTTATAGTGTATAGTGGCGAA--GGAAGGGAGACAGA------- 489 ** **** ** ** * **** * * * * *** * consensus_2210#0 TAAACCAGATCCTATTAAATACGGTGGTTAATTACAGTATTGCNGCGCAAACGGACAATG 653 consensus_2210#1 -AAACACGAA------AGACTTAGCATTTAGTAGCTGTTGTTTTAAGC-------CATTT 535 **** ** * * * *** * * ** * ** ** * consensus_2210#0 TGGGAGACACAGGGTAAAAAGAGAACGGGAAATAGAACACTATTAAGGCGAATATATAAG 713 consensus_2210#1 TAAGAAACATTGCGTAAGGAGAGAG--------AGAGCACTGCTTCGGCCCATG---ACA 584 * ** *** * **** ***** *** **** * *** ** * consensus_2210#0 ATAAAACCTGGGGNGGGATTTTAAAANAGCCCAATTTTTTATAGAGAAAAAACCAATTTT 773 consensus_2210#1 ATCATACCGCGCGCGCAAAANGCATGTTGCGTGCGGNTCTGCTCATGTACAGTGCATAAG 644 ** * *** * * * * * ** * * * * * ** consensus_2210#0 GG-GGTTTAAAATGNGAGAGANAAAGAAAGCAGCATGTNGGTTNTCGGGGACCCAATTTG 832 consensus_2210#1 AGTAGCTCATATTGAGCAAACCTAGCAATGTAGAATGATTTTAAAGNTTAGCCTTATTTT 704 * * * * * ** * * * ** * ** *** * ** **** consensus_2210#0 AGAAAATTTCATATAACCATCGGAGTGGCAGTCGGTCACAAAAAGGGTCAATTTGTTNTG 892 consensus_2210#1 GTAACCTATTAGCAAGAACACGGNTTGGCTGGATG------------------------- 739 ** * * * * *** **** * * consensus_2210#0 GCGGTNGCAGGGTTCATTGNTNCACATTNGTAGAAAGGAGGGCGATAAAGAAGGGTAGGT 952 consensus_2210#1 ------------------------------------------------------------ consensus_2210#0 CAAATAATTGNAGTAAAAACTAAACAACGTGTAGAGAAATGGGTATTTTAAG 1004 consensus_2210#1 ---------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||