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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2261#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 809 fasta sequence
[AGGCAAGAATTCGGCACGATGGATCGGTTCGCCAGCAGGCTGTGGGAAATCATCGACCGGAAGTATGCAATCCCGATCGATGGAGGAATTGAGGTGAGCAATCCACCGGCGGGGCAGATTCAGTTCCGTGACGTTATCTTCCACTATCCATCCCGACCGGACGCACCGATTCTGAACGGTGTAAACTTGACAATCGAACCGGGTACCTCGACTGCCGTCGTGGGACGCAGCGGCTCCGGCAAATCGACCATCGCATCGTTAATGTTAAGGCTTTACGATCCGGCACAAGGATCCGTTCGGCTGGATGGGACCGATCTGCGCGACCTAAATCCCTCCTCACTGCGGCGCCACATCGGAGCAGTTAATCAGGAACCGGTACTGTTCAGCGGCAGCATACGGGAAAACATCCTGTACGGGTTGAACATGGGCGAGAAAATCTCCGAAAGCGCCTTCCAGCGGGTCGTGCGGGAAGCGCACGTGGACGAGTTTGTGCGCCACTTCCCGGACGGGCTGGATACCCTCGTCGGCCAGCGCGGTGTGATGCTGAGCGGCGGGCCAAAAGCAACGCGTTGCGATCGCGCGGGCAAGTCATACGGGAAGCCCANAACAGTACTGAGTCCTGGATGAGGGCGACCAAGGGCAACTTGGACGCGGTATCGGAGGAGCTGGATTAGCCAGGAACGGCGGCCTCCGAAGNCGGGGTTGGACCCAAAGGAAACCGGGGAACCGTGGACTTGACGGATTCGGCCCAACCCGGGCTTGAAGNCACACGATTCCGGGAACAGGCGGAGCAACATTGCGGGTGCTGC]
[+] EMBL BX468389 [AGGCAAGAATTCGGCACGATGGATCGGTTCGCCAGCAGGCTGTGGGAAATCATCGACCGGAAGTATGCAATCCCGATCGATGGAGGAATTGAGGTGAGCAATCCACCGGCGGGGCAGATTCAGTTCCGTGACGTTATCTTCCACTATCCATCCCGACCGGACGCACCGATTCTGAACGGTGTAAACTTGACAATCGAACCGGGTACCTCGACTGCCGTCGTGGGACGCAGCGGCTCCGGCAAATCGACCATCGCATCGTTAATGTTAAGGCTTTACGATCCGGCACAAGGATCCGTTCGGCTGGATGGGACCGATCTGCGCGACCTAAATCCCTCCTCACTGCGGCGCCACATCGGAGCAGTTAATCAGGAACCGGTACTGTTCAGCGGCAGCATACGGGAAAACATCCTGTACGGGTTGAACATGGGCGAGAAAATCTCCGAAAGCGCCTTCCAGCGGGTCGTGCGGGAAGCGCACGTGGACGAGTTTGTGCGCCACTTCCCGGACGGGCTGGATACCCTCGTCGGCCAGCGCGGTGTGATGCTGAGCGGCGGGCCAAAAGCAACGCGTTGCGATCGCGCGGGCAAGTCATACGGGAAGCCCANAACAGTACTGAGTCCTGGATGAGGGCGACCAAGGGCAACTTGGACGCGGTATCGGAGGAGCTGGATTAGCCAGGAACGGCGGCCTCCGAAGNCGGGGTTGGACCCAAAGGAAACCGGGGAACCGTGGACTTGACGGATTCGGCCCAACCCGGGCTTGAAGNCACACGATTCCGGGAACAGGCGGAGCAACATTGCGGGTGCTGC]
consensusID : consensus_2261#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 260 fasta sequence
[AGGGCAAGAATTGCCCCGAGGTTNAAACGGTGTAAACTTGACATCGAACCGGGTACTCGACTGCCGTCGTGGGACGCAGCGGCTCCGGCAAATCGACCATCGCATCGTTAATGTTAAGGCTTTACGATCCGGCACAAGGATCCGTTCGGCTGGATGGGACCGATCTGCGCGACCTAAATCCCTCCTCACTGCGGCGCCACATCGGAGCAGTTAATCAGGAACCGGTACTGTTCAGCGGAGATACGGGAAAACATCCTGTA]
[+] EMBL AL696842 [AGGGCAAGAATTGCCCCGAGGTTNAAACGGTGTAAACTTGACATCGAACCGGGTACTCGACTGCCGTCGTGGGACGCAGCGGCTCCGGCAAATCGACCATCGCATCGTTAATGTTAAGGCTTTACGATCCGGCACAAGGATCCGTTCGGCTGGATGGGACCGATCTGCGCGACCTAAATCCCTCCTCACTGCGGCGCCACATCGGAGCAGTTAATCAGGAACCGGTACTGTTCAGCGGAGATACGGGAAAACATCCTGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2261#0 AGGCAAGAATTCGGCACGATGGATCGGTTCGCCAGCAGGCTGTGGGAAATCATCGACCGG 60
consensus_2261#1 ------------------------------------------------------------
consensus_2261#0 AAGTATGCAATCCCGATCGATGGAGGAATTGAGGTGAGCAATCCACCGGCGGGGCAGATT 120
consensus_2261#1 ------------------------------------------------------------
consensus_2261#0 CAGTTCCGTGACGTTATCTTCCACTATCCATCCCGACCGGA--CGCACCGAT-TCTGAAC 177
consensus_2261#1 --------------------------------AGGGCAAGAATTGCCCCGAGGTTNAAAC 28
* * ** ** **** * ***
consensus_2261#0 GGTGTAAACTTGACAATCGAACCGGGTACCTCGACTGCCGTCGTGGGACGCAGCGGCTCC 237
consensus_2261#1 GGTGTAAACTTGACA-TCGAACCGGGTAC-TCGACTGCCGTCGTGGGACGCAGCGGCTCC 86
*************** ************* ******************************
consensus_2261#0 GGCAAATCGACCATCGCATCGTTAATGTTAAGGCTTTACGATCCGGCACAAGGATCCGTT 297
consensus_2261#1 GGCAAATCGACCATCGCATCGTTAATGTTAAGGCTTTACGATCCGGCACAAGGATCCGTT 146
************************************************************
consensus_2261#0 CGGCTGGATGGGACCGATCTGCGCGACCTAAATCCCTCCTCACTGCGGCGCCACATCGGA 357
consensus_2261#1 CGGCTGGATGGGACCGATCTGCGCGACCTAAATCCCTCCTCACTGCGGCGCCACATCGGA 206
************************************************************
consensus_2261#0 GCAGTTAATCAGGAACCGGTACTGTTCAGCGGCAGCATACGGGAAAACATCCTGTACGGG 417
consensus_2261#1 GCAGTTAATCAGGAACCGGTACTGTTCAGCGGAG--ATACGGGAAAACATCCTGTA---- 260
******************************** ********************
consensus_2261#0 TTGAACATGGGCGAGAAAATCTCCGAAAGCGCCTTCCAGCGGGTCGTGCGGGAAGCGCAC 477
consensus_2261#1 ------------------------------------------------------------
consensus_2261#0 GTGGACGAGTTTGTGCGCCACTTCCCGGACGGGCTGGATACCCTCGTCGGCCAGCGCGGT 537
consensus_2261#1 ------------------------------------------------------------
consensus_2261#0 GTGATGCTGAGCGGCGGGCCAAAAGCAACGCGTTGCGATCGCGCGGGCAAGTCATACGGG 597
consensus_2261#1 ------------------------------------------------------------
consensus_2261#0 AAGCCCANAACAGTACTGAGTCCTGGATGAGGGCGACCAAGGGCAACTTGGACGCGGTAT 657
consensus_2261#1 ------------------------------------------------------------
consensus_2261#0 CGGAGGAGCTGGATTAGCCAGGAACGGCGGCCTCCGAAGNCGGGGTTGGACCCAAAGGAA 717
consensus_2261#1 ------------------------------------------------------------
consensus_2261#0 ACCGGGGAACCGTGGACTTGACGGATTCGGCCCAACCCGGGCTTGAAGNCACACGATTCC 777
consensus_2261#1 ------------------------------------------------------------
consensus_2261#0 GGGAACAGGCGGAGCAACATTGCGGGTGCTGC 809
consensus_2261#1 --------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||