These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_229#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAGGAGATCGCGCTGAACTGCGGTACCATGCTGCGCGAGTGCGCCCGTTACGAGGCGCTCGCCAAGATCATGCTGCACTCGGACGAGTTCTTCAACTTCTTCCGCTACGTCGAGGTGTCCACGTTCGATATTGCGTCCGATGCATTCTCCACCTTCAAGGAGCTGCTCACCCGCCACAAGATCCTGTGCGCGGAGTTCCTCGAGCAGAACTACGACAAGGTGTTCAACCACTACGAGCATCTGCTCAACTCGGAAAACTACGTGACGCGGCGGCAAAGCCTTAAGCTGCTCGGCGAGCTGCTGCTCGACCGGCACAACTTCACGGTCATGACGAAGTACATCTCCAACCCGGACAACCTGAAGCTGATGATGAACATGCTCAAGGAGAAGTCGCGCAACATCCAGTTCGAGGCGTTCCACGTGTTCAAGGTGTTTGTCGCGAACCCGAACAAACCGAAACCGATCCTGGACATACTGCTGCGCAACCAGGAAAAGCTGGTCGACTTTCTGACCCGCTTCCACACCGACCGCTCGGAGGACGAACAGTTCAACGACGAGAAGGCTTACCTGATCAAGCAGATCAAGGAGCTAAAGCCGGCCCCGGATCAATAGTCGTGCCGCGCCGACATTGCCACCCGCTCATC] [+] EMBL BM586417 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAGGAGATCGCGCTGAACTGCGGTACCATGCTGCGCGAGTGCGCCCGTTACGAGGCGCTCGCCAAGATCATGCTGCACTCGGACGAGTTCTTCAACTTCTTCCGCTACGTCGAGGTGTCCACGTTCGATATTGCGTCCGATGCATTCTCCACCTTCAAGGAGCTGCTCACCCGCCACAAGATCCTGTGCGCGGAGTTCCTCGAGCAGAACTACGACAAGGTGTTCAACCACTACGAGCATCTGCTCAACTCGGAAAACTACGTGACGCGGCGGCAAAGCCTTAAGCTGCTCGGCGAGCTGCTGCTCGACCGGCACAACTTCACGGTCATGACGAAGTACATCTCCAACCCGGACAACCTGAAGCTGATGATGAACATGCTCAAGGAGAAGTCGCGCAACATCCAGTTCGAGGCGTTCCACGTGTTCAAGGTGTTTGTCGCGAACCCGAACAAACCGAAACCGATCCTGGACATACTGCTGCGCAACCAGGAAAAGCTGGTCGACTTTCTGACCCGCTTCCACACCGACCGCTCGGAGGACGAACAGTTCAACGACGAGAAGGCTTACCTGATCAAGCAGATCAAGGAGCTAAAGCCGGCCCCGGATCAATAGTCGTGCCGCGCCGACATTGCCACCCGCTCATC] consensusID : consensus_229#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [CCGCCCACGCGTCCGGTGGTGTGTGGGGGTCGTCAGCCAAATCGATGATTACATTTCTTCTCCTCCATTTTTTTATATCGACAAGGGCGCGCACGACCATCTGTCGCGCCGAAATCTCTTTCTAATTTGTTTTTACAATCAGGTTTTGTAAGTGAGTGACAAAAAAATACAAAAATAACATTAAAAAACAAATACACTTTTACAAAGGAAGATAAAAATTATTCTTAGTGTGGTTAGGGAAGCCAGGGAACAGAGTTTAGGGAAAAAGGGGGGTAACTCTAATAATGTAATTAATAATAATATCAGCGGTAGGAAGTGTACCCCACAGCAGTAGAGGGGGAGGGAGACACTGTTTTTTAAACACCCACAAAAATACACAAAACACAACACGCACACACCCATGTATGCTGCACATACTGGATACAAACACACGTACACAACATCTACACACTCTCATATTGACACAACGACACACGTACTCTTCTGTGTCATCTCCCCCCAGTCTCTCATGTATTTCGCAAATGCGTTAGGAAAGGCCACGGTCCTTCCTCCCAAGGAAATGAGGTAGCGAGAGAGGTGGCAGCAAATGTGCACTGGGGCTCC] [+] EMBL BM596528 [CCGCCCACGCGTCCGGTGGTGTGTGGGGGTCGTCAGCCAAATCGATGATTACATTTCTTCTCCTCCATTTTTTTATATCGACAAGGGCGCGCACGACCATCTGTCGCGCCGAAATCTCTTTCTAATTTGTTTTTACAATCAGGTTTTGTAAGTGAGTGACAAAAAAATACAAAAATAACATTAAAAAACAAATACACTTTTACAAAGGAAGATAAAAATTATTCTTAGTGTGGTTAGGGAAGCCAGGGAACAGAGTTTAGGGAAAAAGGGGGGTAACTCTAATAATGTAATTAATAATAATATCAGCGGTAGGAAGTGTACCCCACAGCAGTAGAGGGGGAGGGAGACACTGTTTTTTAAACACCCACAAAAATACACAAAACACAACACGCACACACCCATGTATGCTGCACATACTGGATACAAACACACGTACACAACATCTACACACTCTCATATTGACACAACGACACACGTACTCTTCTGTGTCATCTCCCCCCAGTCTCTCATGTATTTCGCAAATGCGTTAGGAAAGGCCACGGTCCTTCCTCCCAAGGAAATGAGGTAGCGAGAGAGGTGGCAGCAAATGTGCACTGGGGCTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_229#0 CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAGGAGATCG 60 consensus_229#1 ------------------------------------CCGCCCACGCGTCCGGTGGTGT-G 23 *************** * * * consensus_229#0 CGCTGAACTGCGGTACCATGCTGCGCGAGTGCGCCCGTTACGAGGCGCTCGCCAAGATCA 120 consensus_229#1 TGGGGGTCGTCAG--CCAAATCG-ATGATTACATTTCTTCTCCTCCATTTTTTTATATCG 80 * * * * * *** * ** * * ** * * * *** consensus_229#0 TGCTGCACTCGGACGAGTTCTTCAACTTCTTCCGCTACGTCGAGGTGTCCACGTTCGATA 180 consensus_229#1 ACAAGGGCGCGCACGA-----------CCATCTGTCGCGCCGAAATCTCT---TTCTAAT 126 * * ** **** * ** * ** *** * ** *** * consensus_229#0 TTGCGTCCGATGCATTCTCCACCTTCAAGGAGCTGCTCACCCGCCACAAGATCCTGTGCG 240 consensus_229#1 TTGTTTT---TACAATCAGGTTTTGTAAGTGAGTGACAAAAAAATACAAAAATAACATTA 183 *** * * ** ** * *** ** * **** * consensus_229#0 CGGAGTTCCTCGAGCAGAACTACGACAAGGTGTTCAACCACTACGAGCATCTGCTCAACT 300 consensus_229#1 AAAAA-----CAAATACACTTTTACAAAGGAAGATAAAAATTAT---TCTTAGTGTGGTT 235 * * * * * * **** ** * ** * * * consensus_229#0 CGGAAAACTACGTGACGCGGCGGCAAAGCCTTAAGCTGCTCGGCGAGCTGCTGCTCGACC 360 consensus_229#1 AGGGAAGCCAGGGAACA--GAGTTTAGGGAAAAAGGGGGGTAACT--CTAATAATGTAAT 291 ** ** * * * ** * * * * *** * * ** * * * consensus_229#0 GGCACAACTTCACGGTCATGACGAAGTACATCTCCAACCCGGACAACCTGAAGCTGATGA 420 consensus_229#1 TA-ATAATAATATCAGCGGTAGGAAGTGTACCCCACAGCAGTAGAGGGGGAGGGAGACAC 350 * ** * * * ***** * * * * * * * * ** * ** consensus_229#0 TGAACATGCTCAAGGAGAAGTCGCGCAACATCCAGTTCGAGGCGTTC-CACGTGTTCAAG 479 consensus_229#1 TGT---TTTTTAAACACCCACAAAAATACACAAAACACAACACGCACACACCCATGTATG 407 ** * * ** * *** * * * ** * *** * * * consensus_229#0 GTGTTTGTCGCGAACCCGAACAAACCGAAACCGATCCTGGACATACTGCTGCGCAACCAG 539 consensus_229#1 CTGCACATACTGGATACAAACACACGTACAC--AACATCTACACACTCTCATATTGACAC 465 ** * * * * **** ** * ** * * * *** *** ** consensus_229#0 GAAAAGCTGGTCGACTTTCTGACCCGCTTCCACACCGACCGCTCGGAGGACGAACAGTTC 599 consensus_229#1 AACGACACACGTACTCTTCTGTGTCATCTCC-CCCCAGTCTCTCATGTATTTCGCAAAT- 523 * * ***** * *** * ** * *** ** * consensus_229#0 AACGACGAGAAGGCTTACCTGATCAAGCAGATCAAGGAGCTAAAGCCGGCCCCGGATCAA 659 consensus_229#1 -GCGTTAGGAAAGGCCAC--GGTCCTTCCTCCCAAGGAAATGAGGTAGCGAGAGAGGTGG 580 ** *** * ** * ** * ****** * * * * * consensus_229#0 TAGTCGTGCCGCGCCGACATTGCCACCCGCTCATC 694 consensus_229#1 CAGCAAATGTGCACTGGGGCTCC------------ 603 ** ** * * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||