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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2309#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 938 fasta sequence
[TCGGCCCGAGGGNGTATCTCTGACTGTGCTGGTCGTCTTCCTTTACCAAGACCTGGTGGAACAACTCTCTTATATCAGCGGCCACTGCCACTCGATATTCTCGGAATCTTTGAAGGACTGATGAAAGGGAGGACAGTAGATCTGGACCTGTTAGCAGCATCGAATTCAGAGAGACCCCCATGAAATTGGGGGGGGTCCCCAAAACCAACTCACTTTCCGGCTTGTTAGGGATTTTACCCACCAGGGAACAAGGATAGGGAAAGATACCACCATTTTGGGACCCGAATCGCCTTGTTCTCTTTTTAGGTGACAGCTTTTCGTTGCCATTAAACCCTTTTTTTCTTAAAATTATTCTTGGTGGATTTNTTTCTCCAAGTTCTAACAGCGTCGTTTCCGGTAAGTTTTGGGAACCTTTTCAACCGGCGTCCAATTGCCGTCCGATTCTTAGAGACCAGGTCCCAAGTCCTTTTTTTTAAAAGGCCATTGCCCTTCTTAATTTATTTAGGGCATTCCTTTTCAACCCATTAATTTCCGGGAAGAAAACCGGGCCCGATTAAACCGAAAGCCCCCCCCGGGATNATCCGTGAATTTCCGGTGCGCCAAATTCCTTTAAACGACCTTGGGCGCTTCTTATCGGTAATTGCGCGGTTGGCCCAGGTTAAACGATTAAGGGACCTTTTCCTTAAACGCCCCCTTAAAGAGCGTGTTTGCCCCAAGAGGTTACCCCCCGGGAAACCGAGAAGTTCCGGGCCAAACCGGGGCNAANTTCNGCAACAAGGTTCCCCTCAATTTGGGCCAATTCCCGGGAAATTAACCAAGAACCTCTTTGGGTATCGGAGTATTATTCCGGCGCGAANGGCACAACTATGCGGTTCTCTCGGATTTTTGGGCGCCCNGGGAAGAGTAGCCGAAAAGACCCGGGGTAACTGAACTTTTAA]
[+] EMBL AL697169 [TCGGCCCGAGGGNGTATCTCTGACTGTGCTGGTCGTCTTCCTTTACCAAGACCTGGTGGAACAACTCTCTTATATCAGCGGCCACTGCCACTCGATATTCTCGGAATCTTTGAAGGACTGATGAAAGGGAGGACAGTAGATCTGGACCTGTTAGCAGCATCGAATTCAGAGAGACCCCCATGAAATTGGGGGGGGTCCCCAAAACCAACTCACTTTCCGGCTTGTTAGGGATTTTACCCACCAGGGAACAAGGATAGGGAAAGATACCACCATTTTGGGACCCGAATCGCCTTGTTCTCTTTTTAGGTGACAGCTTTTCGTTGCCATTAAACCCTTTTTTTCTTAAAATTATTCTTGGTGGATTTNTTTCTCCAAGTTCTAACAGCGTCGTTTCCGGTAAGTTTTGGGAACCTTTTCAACCGGCGTCCAATTGCCGTCCGATTCTTAGAGACCAGGTCCCAAGTCCTTTTTTTTAAAAGGCCATTGCCCTTCTTAATTTATTTAGGGCATTCCTTTTCAACCCATTAATTTCCGGGAAGAAAACCGGGCCCGATTAAACCGAAAGCCCCCCCCGGGATNATCCGTGAATTTCCGGTGCGCCAAATTCCTTTAAACGACCTTGGGCGCTTCTTATCGGTAATTGCGCGGTTGGCCCAGGTTAAACGATTAAGGGACCTTTTCCTTAAACGCCCCCTTAAAGAGCGTGTTTGCCCCAAGAGGTTACCCCCCGGGAAACCGAGAAGTTCCGGGCCAAACCGGGGCNAANTTCNGCAACAAGGTTCCCCTCAATTTGGGCCAATTCCCGGGAAATTAACCAAGAACCTCTTTGGGTATCGGAGTATTATTCCGGCGCGAANGGCACAACTATGCGGTTCTCTCGGATTTTTGGGCGCCCNGGGAAGAGTAGCCGAAAAGACCCGGGGTAACTGAACTTTTAA]
consensusID : consensus_2309#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence
[CCGATACATTCGACTGCACGAGGATGCGATGTGGCATATTTGTCGGTGTTGAGGTTTTTCACAAACTGCCCACTGCTGGGAGAGCAGCCCACCCAAACATCATTCTTTGCATGACATATTCATCAAGTTCAGTTTGCTCTCTATTCCAACGCCATAGGAATCTCTGACTGTGCTGGTCGTCTTCCTTTACCAAGACCTGGTGGAACAACTCTCTTATATCAGCGGCCACTGCCACTCGATATTCTCGGAATCTTT]
[+] EMBL BM580281 [CCGATACATTCGACTGCACGAGGATGCGATGTGGCATATTTGTCGGTGTTGAGGTTTTTCACAAACTGCCCACTGCTGGGAGAGCAGCCCACCCAAACATCATTCTTTGCATGACATATTCATCAAGTTCAGTTTGCTCTCTATTCCAACGCCATAGGAATCTCTGACTGTGCTGGTCGTCTTCCTTTACCAAGACCTGGTGGAACAACTCTCTTATATCAGCGGCCACTGCCACTCGATATTCTCGGAATCTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2309#0 TCGGCCCGAGGGNGTATCTCTGACTGTGCTGGTCGTCTTCCTTTACCAAGACCTGGTGGA 60
consensus_2309#1 ------------------------------------------------------------
consensus_2309#0 ACAACTCTCTTATATCAGCGGCCACTGCCACTCGATATTCTCGGAATCTTTGAAGGACTG 120
consensus_2309#1 ------------------------------------------------------------
consensus_2309#0 ATGAAAGGGAGGACAGTAGATCTGGACCTGTTAGCAGCATCGAATTCAGAGAGACCCCCA 180
consensus_2309#1 ------------------------------------------------------------
consensus_2309#0 TGAAATTGGGGGGGGTCCCCAAAACCAACTCACTTTCCGGCTTGTTAGGGATTTTACCCA 240
consensus_2309#1 ------------------------------------------------------------
consensus_2309#0 CCAGGGAACAAGGATAGGGAAAGATACCACCATTTTGGGACCCGAATCGCCTTGTTCTCT 300
consensus_2309#1 CCGATACATTCGACTGCACGAGGATGCGA----TGTGGCATATTTGTCGGTGTTGAGGTT 56
** * * * * *** * * * *** * *** * *
consensus_2309#0 TTTTAGGTGACAGCTTTTCGTTGCCATTAAACCCTTTTTTTCTTAAAATTATTCTTGGTG 360
consensus_2309#1 TTTCACA----AACTGCCCACTGCTGGGAGAGCAGCCCACCCA-AACATCATTCTTTGCA 111
*** * * ** * *** * * * * ** ** ****** *
consensus_2309#0 GATTTNTTTCTCCAAGTTCTAACAGCGTCGTTTCCGGTAAGTTTTGGGAACCTTTTCAAC 420
consensus_2309#1 TGACATATTCATCAAGTTCAGTTTGCTCTCTATTCCA-ACGCCATAGGAATCTCT--GAC 168
*** ******* ** * * * * * * **** ** * **
consensus_2309#0 CGGCGTCCAATTGCCGTCCGATTCTTAGAGACCAGGTCCCA-AGTCCTTTTTTTTAAAAG 479
consensus_2309#1 TGTG--CTGGTCGTCTTCC--TTTACCAAGACCTGGTGGAACAACTCTCTTATATCAGCG 224
* * * * * *** ** ***** *** * * ** ** * * * *
consensus_2309#0 GCCATTGCCCTTCTTAATTTATTTAGGGCATTCCTTTTCAACCCATTAATTTCCGGGAAG 539
consensus_2309#1 GCCACTGCC--ACTCGATATTCTCGGAATCTTT--------------------------- 255
**** **** ** ** * * * **
consensus_2309#0 AAAACCGGGCCCGATTAAACCGAAAGCCCCCCCCGGGATNATCCGTGAATTTCCGGTGCG 599
consensus_2309#1 ------------------------------------------------------------
consensus_2309#0 CCAAATTCCTTTAAACGACCTTGGGCGCTTCTTATCGGTAATTGCGCGGTTGGCCCAGGT 659
consensus_2309#1 ------------------------------------------------------------
consensus_2309#0 TAAACGATTAAGGGACCTTTTCCTTAAACGCCCCCTTAAAGAGCGTGTTTGCCCCAAGAG 719
consensus_2309#1 ------------------------------------------------------------
consensus_2309#0 GTTACCCCCCGGGAAACCGAGAAGTTCCGGGCCAAACCGGGGCNAANTTCNGCAACAAGG 779
consensus_2309#1 ------------------------------------------------------------
consensus_2309#0 TTCCCCTCAATTTGGGCCAATTCCCGGGAAATTAACCAAGAACCTCTTTGGGTATCGGAG 839
consensus_2309#1 ------------------------------------------------------------
consensus_2309#0 TATTATTCCGGCGCGAANGGCACAACTATGCGGTTCTCTCGGATTTTTGGGCGCCCNGGG 899
consensus_2309#1 ------------------------------------------------------------
consensus_2309#0 AAGAGTAGCCGAAAAGACCCGGGGTAACTGAACTTTTAA 938
consensus_2309#1 ---------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||