These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2319#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 630 fasta sequence [CCGGTTTGTGAGACAGAGCGTCTTTTGTCAAGCAACTTTTGTTATTGTGAAAAAAATGGAAAAAAAGGAATTTCGTGTTTTGATAAAATACTGTTTTCTGAAGGGAAAAAATACAGTGGAAGCAAAAACTTGGCTTGATAATGAGTTTCCGGACTCTGCCCCAGGGAAATCAACAATAATTGATTGGTATGCAAAATTCAAGCGTGGTGAAATGAGCACGGAGGACGGTGAACGCAGTGGACGCCCGAAAGAGGTAGTTACCGACGAAAACATCAAAAAAATCCACAAAATGATTTTGAATGACCGTAAAATGAAGTTGATCGAGATAGCAGAGGCCTTAAAGATATCAAAAGAACGTGTTGGTCATATCATTCATCAATATTTGGATATGCGGAAGCTCTGTGCAAAATGGGTCTCGCGCGAGCTCACATTTGACCAAAAACACCAACGTGTTGATGATTCGGAGCGGTGTTTGCAGCTGTTAACTCGTAATACACCCGAGTTTTTGCGTCGATATGTGACAATGGGTGAAACATGGCTCCATCACTACACTCCTGAGTCCAATCGACAGTCGGCTCAGTGGACAGCGACCGGTGAACCGGCTCCGAAGCGTGGAAAGACTCAAAAGTC] [+] EMBL BM651632 [CCGGTTTGTGAGACAGAGCGTCTTTTGTCAAGCAACTTTTGTTATTGTGAAAAAAATGGAAAAAAAGGAATTTCGTGTTTTGATAAAATACTGTTTTCTGAAGGGAAAAAATACAGTGGAAGCAAAAACTTGGCTTGATAATGAGTTTCCGGACTCTGCCCCAGGGAAATCAACAATAATTGATTGGTATGCAAAATTCAAGCGTGGTGAAATGAGCACGGAGGACGGTGAACGCAGTGGACGCCCGAAAGAGGTAGTTACCGACGAAAACATCAAAAAAATCCACAAAATGATTTTGAATGACCGTAAAATGAAGTTGATCGAGATAGCAGAGGCCTTAAAGATATCAAAAGAACGTGTTGGTCATATCATTCATCAATATTTGGATATGCGGAAGCTCTGTGCAAAATGGGTCTCGCGCGAGCTCACATTTGACCAAAAACACCAACGTGTTGATGATTCGGAGCGGTGTTTGCAGCTGTTAACTCGTAATACACCCGAGTTTTTGCGTCGATATGTGACAATGGGTGAAACATGGCTCCATCACTACACTCCTGAGTCCAATCGACAGTCGGCTCAGTGGACAGCGACCGGTGAACCGGCTCCGAAGCGTGGAAAGACTCAAAAGTC] consensusID : consensus_2319#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGAGCGTCTTTTGTCAAGCAACTTTTGTTATTGTGAAAAAAATGGAAAAAAAGGAATTTCGTGTTTTGATAAAATACTGTTTTCTGAAGGGAAAAAATACAGTGGAAGCAAAAACTTGGCTTGATAATGAGTTTCCGGACTCTGCCCCAGGGAAATCAACAATAATTGATTGGTATGCAAAATTCAAGCGTGGTGAAATGAGCACGGAGGACGGTGAACGCAGTGGACGCCCGAAAGAGGTAGTTACCGACGAAAACATCAAAAAAATCCACAAAATGATTTTGAATGACCGTAAAATGAAGTTGATCGAGATAGCAGAGGCCTTAAAGATATCAAAAGAACGTGTTGGTCATATCATTCATCAATATTTGGATATGCGGAAGCTCTGTGCAAAATGGGTCTCGCGCGAGCTCACATTTGACCAAAAACACCAACGTGTTGATGATTCGGAGCGGTGATTTGCAGCTGTTAACTCGTAATACACCCGAGTTTTTGCGTCGATATGTGACAATGGGTGAAACATGGCTCCATCACTACACTCCTGAGTCCAATCGACAGTCGGCTCAGTGGACAGCGACCGGTGAACCGGCTCC] [+] EMBL BM598113 [CCGCGGACGCGTGGGCGGACGCGTGGGAGCGTCTTTTGTCAAGCAACTTTTGTTATTGTGAAAAAAATGGAAAAAAAGGAATTTCGTGTTTTGATAAAATACTGTTTTCTGAAGGGAAAAAATACAGTGGAAGCAAAAACTTGGCTTGATAATGAGTTTCCGGACTCTGCCCCAGGGAAATCAACAATAATTGATTGGTATGCAAAATTCAAGCGTGGTGAAATGAGCACGGAGGACGGTGAACGCAGTGGACGCCCGAAAGAGGTAGTTACCGACGAAAACATCAAAAAAATCCACAAAATGATTTTGAATGACCGTAAAATGAAGTTGATCGAGATAGCAGAGGCCTTAAAGATATCAAAAGAACGTGTTGGTCATATCATTCATCAATATTTGGATATGCGGAAGCTCTGTGCAAAATGGGTCTCGCGCGAGCTCACATTTGACCAAAAACACCAACGTGTTGATGATTCGGAGCGGTGATTTGCAGCTGTTAACTCGTAATACACCCGAGTTTTTGCGTCGATATGTGACAATGGGTGAAACATGGCTCCATCACTACACTCCTGAGTCCAATCGACAGTCGGCTCAGTGGACAGCGACCGGTGAACCGGCTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2319#0 -----------CCGGTTTGTGAGACAGAGCGTCTTTTGTCAAGCAACTTTTGTTATTGTG 49 consensus_2319#1 CCGCGGACGCGTGGGCGGACGCGTGGGAGCGTCTTTTGTCAAGCAACTTTTGTTATTGTG 60 ** * * ********************************** consensus_2319#0 AAAAAAATGGAAAAAAAGGAATTTCGTGTTTTGATAAAATACTGTTTTCTGAAGGGAAAA 109 consensus_2319#1 AAAAAAATGGAAAAAAAGGAATTTCGTGTTTTGATAAAATACTGTTTTCTGAAGGGAAAA 120 ************************************************************ consensus_2319#0 AATACAGTGGAAGCAAAAACTTGGCTTGATAATGAGTTTCCGGACTCTGCCCCAGGGAAA 169 consensus_2319#1 AATACAGTGGAAGCAAAAACTTGGCTTGATAATGAGTTTCCGGACTCTGCCCCAGGGAAA 180 ************************************************************ consensus_2319#0 TCAACAATAATTGATTGGTATGCAAAATTCAAGCGTGGTGAAATGAGCACGGAGGACGGT 229 consensus_2319#1 TCAACAATAATTGATTGGTATGCAAAATTCAAGCGTGGTGAAATGAGCACGGAGGACGGT 240 ************************************************************ consensus_2319#0 GAACGCAGTGGACGCCCGAAAGAGGTAGTTACCGACGAAAACATCAAAAAAATCCACAAA 289 consensus_2319#1 GAACGCAGTGGACGCCCGAAAGAGGTAGTTACCGACGAAAACATCAAAAAAATCCACAAA 300 ************************************************************ consensus_2319#0 ATGATTTTGAATGACCGTAAAATGAAGTTGATCGAGATAGCAGAGGCCTTAAAGATATCA 349 consensus_2319#1 ATGATTTTGAATGACCGTAAAATGAAGTTGATCGAGATAGCAGAGGCCTTAAAGATATCA 360 ************************************************************ consensus_2319#0 AAAGAACGTGTTGGTCATATCATTCATCAATATTTGGATATGCGGAAGCTCTGTGCAAAA 409 consensus_2319#1 AAAGAACGTGTTGGTCATATCATTCATCAATATTTGGATATGCGGAAGCTCTGTGCAAAA 420 ************************************************************ consensus_2319#0 TGGGTCTCGCGCGAGCTCACATTTGACCAAAAACACCAACGTGTTGATGATTCGGAGCGG 469 consensus_2319#1 TGGGTCTCGCGCGAGCTCACATTTGACCAAAAACACCAACGTGTTGATGATTCGGAGCGG 480 ************************************************************ consensus_2319#0 TG-TTTGCAGCTGTTAACTCGTAATACACCCGAGTTTTTGCGTCGATATGTGACAATGGG 528 consensus_2319#1 TGATTTGCAGCTGTTAACTCGTAATACACCCGAGTTTTTGCGTCGATATGTGACAATGGG 540 ** ********************************************************* consensus_2319#0 TGAAACATGGCTCCATCACTACACTCCTGAGTCCAATCGACAGTCGGCTCAGTGGACAGC 588 consensus_2319#1 TGAAACATGGCTCCATCACTACACTCCTGAGTCCAATCGACAGTCGGCTCAGTGGACAGC 600 ************************************************************ consensus_2319#0 GACCGGTGAACCGGCTCCGAAGCGTGGAAAGACTCAAAAGTC 630 consensus_2319#1 GACCGGTGAACCGGCTCC------------------------ 618 ****************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||