These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2322#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1482 fasta sequence [GCCACCACCGCGGCTAGCTCAGGCAGAATTGCCCCCAGGTTTTATCAGAGAACAGAGAAGTGTTTGAATTTCCCGAATCTGAGCCCGTTCTTCCCAAAATTCCACACCGGACACAGGTTTCGGTAAGACATAACCTGCTGTCTGTATGCACAACAACCAACCTCTCTGTTCTGTGCAAGCCTAGTGTGACGATTATTTACGCTGTGTGCTATATGGCTGTGGCATNACCAGCATTGGGACCGCCAGTGTAAGGCTGTAGCAGCCACAGGGAAGCACAGTGGGAAGCCAGTCAGGCAGGTGCCAAAAAACANAGGGGTACCANTTATTTCTCCTTACCAAGCTATACCCTGCGGTTNATCGCGGTTGGTTTCAGGTTAACCTGTGGTATTCCGAATGGAACGCGGAAGCCAACAGTGGCATTGGCACATTTTGCCTGGGCCCCAAGGCGAATTAAGTTTTAGGCCCCTTGGTCGCCTNGGCTTACCGGTACCCTTGTATCCNGGGTTTGGTTGCCGGGTCCTNAAAGTTAGTTAGTATGCCAAGGNTCATAGCGCCCCCGGTTGGCCGCAGCAATTATATCCAATCAGGAATTTTCCCTGGCGTNTCCCAAACCCATTNTTGAACCCTGGAATTGGTGCCNGGCCACAACCTGGGGTATTAGGCCCTGGTATCATTATGGCATTCGCAAGGGCAATTACCCTGGGGCCCAACCAAACCCAGGCGGTTTGGTAGGCATTCCCTGTTAACTGTAATAAGCCGAATAATGGCAACCAGGTTTNAACGTTTAAACCCCTACGGGNGCGGTTTCGGCAATTACCCGGGCAATCTGCCAACCCTGAGGAAGTATTAAAANCCCTCAAGGTGAGGCAACCTTCTTTCTATGGGCGTTTCAACCTGCTAACACGCACAAGGGGGGTATAACACTGAGTTTAGGCGCCCNGGGGAATAAGCNCTTTCAAATTAGGTTTATGCCTCGGCCCATGGTGNCAACTATTGGCGCCNTTAGGTATAGGCGCAGACGTCCGNGTGTGTTANGCCCAGGAGGGACATNATCCCTTTCAGGGCATTAGGTTTACGCCCCGCGGCCTCTATGGGTATTGCCACTCTGACCCAGATGCACTGACAAAANGCACAACACCGTGCAATGGTAACTTNCNTTTATTGGGCAGCACAAACAACGGACCCTGGTNGACTANGGGACCNANACGTGGNCCCACACNAACCCTGCGTGGTCACACCCGGCGAACACCTNACACTTCTCTTTGGCCCCCTGAGGAACGTTACCCCCCCANTTGGAAGGAATTGTGAANAAAACCCCGGGTTTTCGCAACAGTGCCGGGACCAGNAAAACGACGGCAGNAAACTAAAAGCGACCCANGAGGGNTANCCCAGGACACGTTCCCCATTTTGGTGCAGNNGTGGGCAAAAAAACACGCCCAAAGATATTTACACTANAAACCATATGNNGTNACACACACGGGN] [+] EMBL AL697300 [GCCACCACCGCGGCTAGCTCAGGCAGAATTGCCCCCAGGTTTTATCAGAGAACAGAGAAGTGTTTGAATTTCCCGAATCTGAGCCCGTTCTTCCCAAAATTCCACACCGGACACAGGTTTCGGTAAGACATAACCTGCTGTCTGTATGCACAACAACCAACCTCTCTGTTCTGTGCAAGCCTAGTGTGACGATTATTTACGCTGTGTGCTATATGGCTGTGGCATNACCAGCATTGGGACCGCCAGTGTAAGGCTGTAGCAGCCACAGGGAAGCACAGTGGGAAGCCAGTCAGGCAGGTGCCAAAAAACANAGGGGTACCANTTATTTCTCCTTACCAAGCTATACCCTGCGGTTNATCGCGGTTGGTTTCAGGTTAACCTGTGGTATTCCGAATGGAACGCGGAAGCCAACAGTGGCATTGGCACATTTTGCCTGGGCCCCAAGGCGAATTAAGTTTTAGGCCCCTTGGTCGCCTNGGCTTACCGGTACCCTTGTATCCNGGGTTTGGTTGCCGGGTCCTNAAAGTTAGTTAGTATGCCAAGGNTCATAGCGCCCCCGGTTGGCCGCAGCAATTATATCCAATCAGGAATTTTCCCTGGCGTNTCCCAAACCCATTNTTGAACCCTGGAATTGGTGCCNGGCCACAACCTGGGGTATTAGGCCCTGGTATCATTATGGCATTCGCAAGGGCAATTACCCTGGGGCCCAACCAAACCCAGGCGGTTTGGTAGGCATTCCCTGTTAACTGTAATAAGCCGAATAATGGCAACCAGGTTTNAACGTTTAAACCCCTACGGGNGCGGTTTCGGCAATTACCCGGGCAATCTGCCAACCCTGAGGAAGTATTAAAANCCCTCAAGGTGAGGCAACCTTCTTTCTATGGGCGTTTCAACCTGCTAACACGCACAAGGGGGGTATAACACTGAGTTTAGGCGCCCNGGGGAATAAGCNCTTTCAAATTAGGTTTATGCCTCGGCCCATGGTGNCAACTATTGGCGCCNTTAGGTATAGGCGCAGACGTCCGNGTGTGTTANGCCCAGGAGGGACATNATCCCTTTCAGGGCATTAGGTTTACGCCCCGCGGCCTCTATGGGTATTGCCACTCTGACCCAGATGCACTGACAAAANGCACAACACCGTGCAATGGTAACTTNCNTTTATTGGGCAGCACAAACAACGGACCCTGGTNGACTANGGGACCNANACGTGGNCCCACACNAACCCTGCGTGGTCACACCCGGCGAACACCTNACACTTCTCTTTGGCCCCCTGAGGAACGTTACCCCCCCANTTGGAAGGAATTGTGAANAAAACCCCGGGTTTTCGCAACAGTGCCGGGACCAGNAAAACGACGGCAGNAAACTAAAAGCGACCCANGAGGGNTANCCCAGGACACGTTCCCCATTTTGGTGCAGNNGTGGGCAAAAAAACACGCCCAAAGATATTTACACTANAAACCATATGNNGTNACACACACGGGN] consensusID : consensus_2322#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 645 fasta sequence [CCGGCCAGCGAAGGCGAACGTGCGGCTAGCGAACTCGCGCGTCCGAGCAAGCGTGGTGTTTGGACAGAGTTTTCGAAGTGTGTGATACGTGCGTGGTTTCATCGTGCTGAAGAAATACTCGAAACTATCCCAATTCCGTTTGAACAATTCAAACACTTTGTCGCGTGAGCCAGCCAAGAAACCCGAACGTGAAGAGTTTTCGGGGGCTCCTAATCTAAACCTGTTTGCTGGTGTTGTTTGTGTGGATCGAAATTGTGTGATCTTCCCCATTCGATATTGAGTTTTAGAGGTGGATTTGTGGTGAAACAAGTTATTGGCCGGTACGGGCTCAGAAGTTGTGTGCCAGTTTCGGGAGTTTCGGGATTTTCGACCGGTCGGAAGTTCCTGGTTCTCCAGTGCGAAACGGGAGTGAGAGTGAGTCGGCGAGTCGTTTCCGCGTGTGGGTGATTGTGTAGAAACCGGACTCGCTCGCTGACCTGCGATAGAAAGGCTGTGGTGTGCCTATCGAGAACAGAGAAGTGTTTGAATTTCCCGAATCGAGCCCGTTCTTCCCAAAATTCCACACCGGAACAGGTTTCGGTAGACATAACCGCTGTCTGTATGCAAAAACAACCTCTCTGTTCGGAAGCTGTGGACGATTTTTAG] [+] EMBL BM626621 [CCGGCCAGCGAAGGCGAACGTGCGGCTAGCGAACTCGCGCGTCCGAGCAAGCGTGGTGTTTGGACAGAGTTTTCGAAGTGTGTGATACGTGCGTGGTTTCATCGTGCTGAAGAAATACTCGAAACTATCCCAATTCCGTTTGAACAATTCAAACACTTTGTCGCGTGAGCCAGCCAAGAAACCCGAACGTGAAGAGTTTTCGGGGGCTCCTAATCTAAACCTGTTTGCTGGTGTTGTTTGTGTGGATCGAAATTGTGTGATCTTCCCCATTCGATATTGAGTTTTAGAGGTGGATTTGTGGTGAAACAAGTTATTGGCCGGTACGGGCTCAGAAGTTGTGTGCCAGTTTCGGGAGTTTCGGGATTTTCGACCGGTCGGAAGTTCCTGGTTCTCCAGTGCGAAACGGGAGTGAGAGTGAGTCGGCGAGTCGTTTCCGCGTGTGGGTGATTGTGTAGAAACCGGACTCGCTCGCTGACCTGCGATAGAAAGGCTGTGGTGTGCCTATCGAGAACAGAGAAGTGTTTGAATTTCCCGAATCGAGCCCGTTCTTCCCAAAATTCCACACCGGAACAGGTTTCGGTAGACATAACCGCTGTCTGTATGCAAAAACAACCTCTCTGTTCGGAAGCTGTGGACGATTTTTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2322#0 GCCACCACCGCGGCTAGCTCAGGCAGAATTGCCCCCAGGTTTTATCAGAGAACAGAGAAG 60 consensus_2322#1 ------------------------------------------------------------ consensus_2322#0 TGTTTGAATTTCCCGAATCTGAGCCCGTTCTTCCCAAAATTCCACACCGGACACAGGTTT 120 consensus_2322#1 ------------------------------------------------------------ consensus_2322#0 CGGTAAGACATAACCTGCTGTCTGTATGCACAACAACCAACCTCTCTGTTCTGTGCAAGC 180 consensus_2322#1 ------------------------------------------------------------ consensus_2322#0 CTAGTGTGACGATTATTTACGCTGTGTGCTATATGGCTGTGGCATNACCAGCATTGGGAC 240 consensus_2322#1 ------------------------------------------------------------ consensus_2322#0 CGCCAGTGTAAGGCTGTAGCAGCCACAGGGAAGCACAGTGGGAAGCCAGTCAGGCAGGTG 300 consensus_2322#1 ------------------------------------------------------------ consensus_2322#0 CCAAAAAACANAGGGGTACCANTTATTTCTCCTTACCAAGCTATACCCTGCGGTTNATCG 360 consensus_2322#1 ------------------------------------------------------------ consensus_2322#0 CGGTTGGTTTCAGGTTAACCTGTGGTATTCCGAATGGAACGCGGAAGCCAACAGTGGCAT 420 consensus_2322#1 ------------------------------------------------------------ consensus_2322#0 TGGCACATTTTGCCTGGGCCCCAAGGCGAATTAAGTTTTAGGCCCCTTGGTCGCCTNGGC 480 consensus_2322#1 ------------------------------------------------------------ consensus_2322#0 TTACCGGTACCCTTGTATCCNGGGTTTGGTTGCCGGGTCCTNAAAGTTAGTTAGTATGCC 540 consensus_2322#1 ------------------------------------------------------------ consensus_2322#0 AAGGNTCATAGCGCCCCCGGTTGGCCGCAGCAATTATATCCAATCAGGAATTTTCCCTGG 600 consensus_2322#1 ------------------------------------------------------------ consensus_2322#0 CGTNTCCCAAACCCATTNTTGAACCCTGGAATTGGTGCCNGGCCACAACCTGGGGTATTA 660 consensus_2322#1 ------------------------------------------------------------ consensus_2322#0 GGCCCTGGTATCATTATGGCATTCGCAAGGGCAATTACCCTGGG-GCCCAACCAAACCCA 719 consensus_2322#1 ---CCGGCCAGCG--AAGGCGAACGTGCGGCTAGCGAACTCGCGCGTCCGAGCAAGCGT- 54 ** * * * * *** ** ** * * * * * * ** * *** * consensus_2322#0 GGCGGTTTGGTAGGCATTCCCTGTTAACTGTAATAAGCCGAATAATGGCAACCAGGTTTN 779 consensus_2322#1 GGTGTTTGGACAGAGTTTTCGAAGTGTGTGATACGTGCGTGGTTTCATCGTGCTGAAG-A 113 ** * ** * ** ** * * ** * ** * * * * consensus_2322#0 AACGTTTAAACCCCTACGGGNGCGGTTTCGGCAATTACCCGGGCAATCTGCCAACCCTGA 839 consensus_2322#1 AATACTCGAAACTATCCCAATTCCGTTTGAACAATT---CAAACACTTTGTCG--CGTGA 168 ** * ** * * * * **** ***** * ** * ** * * *** consensus_2322#0 GGAAGTATTAAAANCCCTCAAGGTGAGGCAACCTTCTTTCTATGGGCGTTTCAACCTGCT 899 consensus_2322#1 GCCAGC--CAAGAAACCCGAACGTGAAGAG------TTTTCGGGGGC-TCCTAATCTA-- 217 * ** ** * ** ** **** * *** **** * ** ** consensus_2322#0 AACACGCACAAGGGGGGTATAACACTGAGTTTAGGCGCCCNGGGGAATAAGCNCTTTCAA 959 consensus_2322#1 AACCTGTTTGCTGGTGTTGT--TTGTGTGGATCGAAATTGTGTGATCTTCCCCATTCGAT 275 *** * ** * * * ** * * * * * * * ** * consensus_2322#0 ATTAGGTTT-ATGCCTCGGCCCATGGTGNCAACTATTGGCGCCNTTAGGTATAGGCGCAG 1018 consensus_2322#1 ATTGAGTTTTAGAGGTGGATTTGTGGTGAAACAAGTTATTGGCC---GGTACGGGCTCAG 332 *** **** * * * ***** * ** * * **** *** *** consensus_2322#0 ACGTCCGNGTGTGTTANGCCCAGGAGGGACATNATCCCTTTCAGGGCATTAGGTTTACGC 1078 consensus_2322#1 AAGT---TGTGTGCCAGTTTCGGGAGTTTCGGGATTTTCGACCGGTCGGAAGTTCCTGGT 389 * ** ***** * * **** * ** * ** * ** * * consensus_2322#0 CCCGCGGCCTCTATGGGTATTGCCACTCTGACCCAGATGCACTGACAAAANGCACAACAC 1138 consensus_2322#1 TCTCCAGTGCGAAACGGGAGTGAGAGTGAGTCGGCGAGTCGTTTCCGCG-TGTGGGTGAT 448 * * * * ** * ** * * * * ** * * * * * consensus_2322#0 CGTGCAATGGTAACTTNCNTTTATTGGGCAGCACAAACAACGGACCCTGGTN-GACTANG 1197 consensus_2322#1 TGTGTAGAAACCGGACTCGCTCGCTGACCTGCGATAGAAA--GGCTGTGGTGTGCCTATC 506 *** * * * ** * ** * ** * * **** * *** consensus_2322#0 GGACCNANACGTGGNCCCACACNAACCCTGCGTGGTCACACCCGGCGAACACCTNACACT 1257 consensus_2322#1 GAGAACAGAGAAGTGTTTGAATTTCCCGAATCGAGCCCGTTCTTCCCAAAATTCCACACC 566 * * * * * ** * * * * ** * **** consensus_2322#0 TCTCTTTGGCCCCCTGAGGAACGTTACCCCCCCANTTGGAAGGAATTGTGAANAAAACCC 1317 consensus_2322#1 GGAACAGGTTTC---GGTAGACATAACCGCT--GTCTGTA------TGCAAAAACAACCT 615 * * * ** * *** * ** * ** ** * **** consensus_2322#0 CGGGTTTTCGCAACAGTGCCGGGACCAGNAAAACGACGGCAGNAAACTAAAAGCGACCCA 1377 consensus_2322#1 CTCTGTTCGGAAGCTGTGG-ACGATTTTTAG----------------------------- 645 * ** * * * *** ** * consensus_2322#0 NGAGGGNTANCCCAGGACACGTTCCCCATTTTGGTGCAGNNGTGGGCAAAAAAACACGCC 1437 consensus_2322#1 ------------------------------------------------------------ consensus_2322#0 CAAAGATATTTACACTANAAACCATATGNNGTNACACACACGGGN 1482 consensus_2322#1 --------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||