These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_233#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCTGCGCCCGATGGCCGAGCAGCCGAGCGTGCACATTCTGCACGATCGCGCCCAAACCACCAAGTCGTTCGAGCAGTCGTTCGGTCAGTCGCTGACCGGCGTTGCTCTGCGCTTCCAGGCCAAGTACGACAAGGACTTCATCGACTACGCCTACCTGATGAAGCACATTGAGCAGCACGACTACTGGTCTGCGCTGGTCTATCCGTTCGCCTCGGAGACCTACCACTACCATCAGTTTAACCTGTACTACGATGCTCAGCGCACCAGCGTGAAGAATGTCAAGTTTGTGCTGCAGCACAAGCAGGCCGACTACGACCAGGACTTCCAGACCGCCGACGTGAAACACCCGAAGAGTCGCCACGGATACTCTGGATTCTACAACGAGTACAACTACGCCCAGCCCTTCGTCTACTACGCCGGAAGCCAGCGCCGACAGGAGCAGTTCATGCGCAACGCTGGTGCCGGTATTCGCAACAGCGACGTCAATGTCTACGATTTCGGAATCGTGTTCGAGGGCAAGCAGCAAAAGGCTGAGTTCGTGTTTACCACCGCCTATGCCGACAGCCCAGTCGACGAGAAGGAGCGTCTGTTGATGTTCCTGTCCTTCAGC] [+] EMBL BM576283 [CCGCGGACGCGTGGGCGGACGCGTGGGCTGCGCCCGATGGCCGAGCAGCCGAGCGTGCACATTCTGCACGATCGCGCCCAAACCACCAAGTCGTTCGAGCAGTCGTTCGGTCAGTCGCTGACCGGCGTTGCTCTGCGCTTCCAGGCCAAGTACGACAAGGACTTCATCGACTACGCCTACCTGATGAAGCACATTGAGCAGCACGACTACTGGTCTGCGCTGGTCTATCCGTTCGCCTCGGAGACCTACCACTACCATCAGTTTAACCTGTACTACGATGCTCAGCGCACCAGCGTGAAGAATGTCAAGTTTGTGCTGCAGCACAAGCAGGCCGACTACGACCAGGACTTCCAGACCGCCGACGTGAAACACCCGAAGAGTCGCCACGGATACTCTGGATTCTACAACGAGTACAACTACGCCCAGCCCTTCGTCTACTACGCCGGAAGCCAGCGCCGACAGGAGCAGTTCATGCGCAACGCTGGTGCCGGTATTCGCAACAGCGACGTCAATGTCTACGATTTCGGAATCGTGTTCGAGGGCAAGCAGCAAAAGGCTGAGTTCGTGTTTACCACCGCCTATGCCGACAGCCCAGTCGACGAGAAGGAGCGTCTGTTGATGTTCCTGTCCTTCAGC] consensusID : consensus_233#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence [CCGTACAGGTATTAGTATAGCAGGTGCGCTTCGTTTCCGATCGGGCCGCGCCGCCGCACGCACGACGCCACACGCTGCCGTGCCGCGAGTTAGCACCGCTCGGACGCGCACACCTTTATTAGCAAGCATAGCGAATTTATGAACCGCAATCACACACACACTGTTTAGCATTTAGACGATAGATTAGAAATGATAAAACAATGCAAAGGAAGATGCGGTAAGGAAGAAGCGATGTTCTATTTTGGCATTGTCTTGAGCAATTCGGTTCATTTGCATGAGCGTCATCATACTAGTTCTTTCATTTAGATCAACGGTTTTCAGACTTTTTACCTTTTTTCACTTTTACCTTTCATACAAACTCCTGGATTGTTAGCTTGCTTCTATCTGTCAAACGCCCTGAAGATTTGGGAGGAACGTGTTTTTTACGTCTAATGTTTTTACAGGGTTTTCCAGGTGTTCTCTTAGTTGTCGGACACTTCCTTGACTCTTTCTTATTGGAAGTGAACTTCATAGGTTGGAAATTGGTTTCTATGGCACGGTTTATGACAGGTTTCTTGGCAAATTCCTATTGGATTTGTCCAACA] [+] EMBL BM643932 [CCGTACAGGTATTAGTATAGCAGGTGCGCTTCGTTTCCGATCGGGCCGCGCCGCCGCACGCACGACGCCACACGCTGCCGTGCCGCGAGTTAGCACCGCTCGGACGCGCACACCTTTATTAGCAAGCATAGCGAATTTATGAACCGCAATCACACACACACTGTTTAGCATTTAGACGATAGATTAGAAATGATAAAACAATGCAAAGGAAGATGCGGTAAGGAAGAAGCGATGTTCTATTTTGGCATTGTCTTGAGCAATTCGGTTCATTTGCATGAGCGTCATCATACTAGTTCTTTCATTTAGATCAACGGTTTTCAGACTTTTTACCTTTTTTCACTTTTACCTTTCATACAAACTCCTGGATTGTTAGCTTGCTTCTATCTGTCAAACGCCCTGAAGATTTGGGAGGAACGTGTTTTTTACGTCTAATGTTTTTACAGGGTTTTCCAGGTGTTCTCTTAGTTGTCGGACACTTCCTTGACTCTTTCTTATTGGAAGTGAACTTCATAGGTTGGAAATTGGTTTCTATGGCACGGTTTATGACAGGTTTCTTGGCAAATTCCTATTGGATTTGTCCAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_233#0 CCGCGGACGCGTGGGCGGA-CGCGTGGGCTGCGC--CCGAT--GGCCGAGCAGCCGAGCG 55 consensus_233#1 CCGTACAGGTATTAGTATAGCAGGTGCGCTTCGTTTCCGATCGGGCCGCGCCGCCGCACG 60 *** * * * * * * *** *** ** ***** ***** ** **** ** consensus_233#0 TGC-ACATTCTGCACGATCGCGCC-CAAACCACCA--AGTCGTTCGAGCAGTCGTTCGGT 111 consensus_233#1 CACGACGCCACACGCTGCCGTGCCGCGAGTTAGCACCGCTCGGACGCGCACACCTTTATT 120 * ** * * ** *** * * * ** *** ** *** * ** * consensus_233#0 CAGTCGCTGACCGGCGTTGCTCTGCGCTTCCAGGCCAAGTACGACAAGGACTTCATCGAC 171 consensus_233#1 AGCAAGCATAGCGAATTTATGAACCGCAATCACACACACACTGTTTAGCATTTAGACGAT 180 ** * ** ** *** ** * * * ** * ** *** consensus_233#0 TACGCCTACCTGATGAAGCA---CATTGAGCAGCACGACTACTGGTCTGCGCTGGTCTAT 228 consensus_233#1 AGATTAGAAATGATAAAACAATGCAAAGGAAGATGCGGTAAGGAAGAAGCGATGTTCTAT 240 * **** ** ** ** * ** * *** ** ***** consensus_233#0 CCGTTCGCCTCGGAGACCTACCACTACCATCAGTTTAACCTGTACTACGATGCTCAGCGC 288 consensus_233#1 TTTGGCATTGTCTTGAGCAATTCGGTTCATTTGCATGAGCGTCATCATACTAGTTCTTTC 300 * ** * * *** * * * * * * * * * consensus_233#0 ACCAGCGTGAAGAATGTCAAG--TTTGTGCTGCAGCACAAGCAGGCCGACTACGACCAGG 346 consensus_233#1 ATTTAGATCAACGGTTTTCAGACTTTTTACCTTTTTTCACTTTTACC---TTTCATACAA 357 * * ** * * ** *** * * ** ** * * consensus_233#0 ACTTCCAGACCGCCGACGTGAAACACCCGAAGAGTCGCCACGGATACTCTGGATTCTACA 406 consensus_233#1 ACTCCTGGATTGTTAGCTTGCTTCTATCTGTCAAACGCCCTGAAGATTTGGGA----GGA 413 *** * ** * * ** * * * **** * * * * *** * consensus_233#0 ACGAGTACAACTACGCCCAGCCCTTCGTCTACTACGCCGGAAGCCAGCGCCGACAGGAGC 466 consensus_233#1 ACGTGTTTT-TTACGTCTAATGTTT------TTACAGGGTTTTCCAGGTGTTCTCTTAGT 466 *** ** **** * * ** *** * **** ** consensus_233#0 AGTTCATGCGCAACGCTGGTGCCGGTATTCGCAACAGCGACGTCAATGTCTACGATTTCG 526 consensus_233#1 TGT-CGGACACTTCCTTGACTCT----TTCTTATTGG--AAGTGAACTTC-ATAGGTTGG 518 ** * * * * ** * *** * * * ** ** ** * ** * consensus_233#0 GAATCGTGTTCGAGGGCAAGCAGCAAAAGGCTGAGTTCGTGTTTACCACCGCCTATGCCG 586 consensus_233#1 AAATTGGTTTCTATGGCA--CGGTTTATGACAGGTTTCTTG---GCAAATTCCTATTGGA 573 *** * *** * **** * * * * * * *** ** * * ***** consensus_233#0 ACAGCCCAGTCGACGAGAAGGAGCGTCTGTTGATGTTCCTGTCCTTCAGC 636 consensus_233#1 TTTGTCCAACA--------------------------------------- 584 * *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||