These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2354#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 735 fasta sequence [ACCGACCGGCGACCAACTCGGAGCAGCAGCAGCAGCAGCCGAACCCGATCCAGAACATCGTGCAGGGCGTGCAGAACTTCTTCCGGCCAAGCACGGCTGCCCCGGCCACCCAGTCCGAGGGTACGGCCAACGCACCCGCCGATACGCCCCAGGACACGCCAGCCGCTTAAGCCACAAACACAACACAACACTCACGCACACACACAAAAGCCATATACAGACACGCAAAAAACGCTAGAGAGAGAGGGAGGGAGAGATGCACAATGCACAAGTGGGCGCATCAAGTGTTGATTCCTTTCTTTTTCTAAGGAATGTAACTACTTGCACTGCACCCCGTCCCCTCAGTAGGGGTTCGTCGCTTCCCTTTTTAAGACTTTTCTTTTTTCCATTTTAAAACGCAACAAAACAGCATAAGAACGCCGTTCGAAGAAAACTGCAAAAAAACGCCATCCGCGGCCAAACCGGCAGGGTGCGGACCGACACAGACAGCAAGGCGCGATGTAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAAGGGGGTGAGAGACACATTTCCTAACTTATTTATTTAAACGCACACGCACCGTCGGCAGTCGGTCCCGACACGGCGGCCAGGGGGTGGATCCCCGGTTGGGCGGCAGTTTTTCTTTCGGTTTTTTATTTTTATTTTTCTTAATTTATTGCATTGTGATTCTGTGAGCGGTAGAAGGAAAAAGGGGAG] [+] EMBL BX621546 [ACCGACCGGCGACCAACTCGGAGCAGCAGCAGCAGCAGCCGAACCCGATCCAGAACATCGTGCAGGGCGTGCAGAACTTCTTCCGGCCAAGCACGGCTGCCCCGGCCACCCAGTCCGAGGGTACGGCCAACGCACCCGCCGATACGCCCCAGGACACGCCAGCCGCTTAAGCCACAAACACAACACAACACTCACGCACACACACAAAAGCCATATACAGACACGCAAAAAACGCTAGAGAGAGAGGGAGGGAGAGATGCACAATGCACAAGTGGGCGCATCAAGTGTTGATTCCTTTCTTTTTCTAAGGAATGTAACTACTTGCACTGCACCCCGTCCCCTCAGTAGGGGTTCGTCGCTTCCCTTTTTAAGACTTTTCTTTTTTCCATTTTAAAACGCAACAAAACAGCATAAGAACGCCGTTCGAAGAAAACTGCAAAAAAACGCCATCCGCGGCCAAACCGGCAGGGTGCGGACCGACACAGACAGCAAGGCGCGATGTAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAAGGGGGTGAGAGACACATTTCCTAACTTATTTATTTAAACGCACACGCACCGTCGGCAGTCGGTCCCGACACGGCGGCCAGGGGGTGGATCCCCGGTTGGGCGGCAGTTTTTCTTTCGGTTTTTTATTTTTATTTTTCTTAATTTATTGCATTGTGATTCTGTGAGCGGTAGAAGGAAAAAGGGGAG] consensusID : consensus_2354#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 473 fasta sequence [AGAATTGCCCCNGGTTTAAGCAGGTGCAGAACGCGGTCGGTCGGTGTCAATCGACCGGCGACAACTCGGAGCAGCAGCAGCAGCAGCGAACCGATCCAGAACATCGTGCAGGCGTGCAGAACTTCTTCCGGCCAAGCACGGCTGCCCGGCACCAGTCCGAGGGTACGGGCAACGCACCCGCGATACGCCCCAGGACACGCCAGCGTTAAGCCACAAAAAAAAAACTCACGCACACACACAAAAGGCATATACAGACACNTCAACAAAACGCTAGAGAGAGAGGGAGGGAGAGATGCNCAATGCACAAGTGGGGGCATCCAAGGTGTTGATTCCTTTCTTTTTCTAAGGAATGTAACTACTTGCACATGGACCCCGGTCCCTCAGTAAGGGTTCGNCGCTATCCCTTTTAAGACCTTATCCTTTGTTTCCATTTTTAAAACGCAACAAACACGGAATAAGAACGCGTTCGAAGA] [+] EMBL AL697580 [AGAATTGCCCCNGGTTTAAGCAGGTGCAGAACGCGGTCGGTCGGTGTCAATCGACCGGCGACAACTCGGAGCAGCAGCAGCAGCAGCGAACCGATCCAGAACATCGTGCAGGCGTGCAGAACTTCTTCCGGCCAAGCACGGCTGCCCGGCACCAGTCCGAGGGTACGGGCAACGCACCCGCGATACGCCCCAGGACACGCCAGCGTTAAGCCACAAAAAAAAAACTCACGCACACACACAAAAGGCATATACAGACACNTCAACAAAACGCTAGAGAGAGAGGGAGGGAGAGATGCNCAATGCACAAGTGGGGGCATCCAAGGTGTTGATTCCTTTCTTTTTCTAAGGAATGTAACTACTTGCACATGGACCCCGGTCCCTCAGTAAGGGTTCGNCGCTATCCCTTTTAAGACCTTATCCTTTGTTTCCATTTTTAAAACGCAACAAACACGGAATAAGAACGCGTTCGAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2354#0 -------------------------------------------------ACCGACCGGCG 11 consensus_2354#1 AGAATTGCCCCNGGTTTAAGCAGGTGCAGAACGCGGTCGGTCGGTGTCAATCGACCGGCG 60 * ********* consensus_2354#0 ACCAACTCGGAGCAGCAGCAGCAGCAGCCGAACCCGATCCAGAACATCGTGCAGGGCGTG 71 consensus_2354#1 AC-AACTCGGAGCAGCAGCAGCAGCAGCGAA--CCGATCCAGAACATCGTGCAGG-CGTG 116 ** ************************* * ********************** **** consensus_2354#0 CAGAACTTCTTCCGGCCAAGCACGGCTGCCCCGGCCACCCAGTCCGAGGGTACGGCCAAC 131 consensus_2354#1 CAGAACTTCTTCCGGCCAAGCACGGCTGCCC--GGCACC-AGTCCGAGGGTACGGGCAAC 173 ******************************* * **** *************** **** consensus_2354#0 GCACCCGCCGATACGCCCCAGGACACGCCAGCCGCTTAAGCCACAAACACAACACAACAC 191 consensus_2354#1 GCACCCGC-GATACGCCCCAGGACACGCCAGC--GTTAAGCCACAAAAAAAA-----AAC 225 ******** *********************** ************ * ** ** consensus_2354#0 TCACGCACACACACAAAAGCCATATACAGACACGCAAA--AAACGCTAGAGAGAGAGGGA 249 consensus_2354#1 TCACGCACACACACAAAAGGCATATACAGACACNTCAACAAAACGCTAGAGAGAGAGGGA 285 ******************* ************* ** ******************** consensus_2354#0 GGGAGAGATGCACAATGCACAAGTGGGCGCATC--AAGTGTTGATTCCTTTCTTTTTCTA 307 consensus_2354#1 GGGAGAGATGCNCAATGCACAAGTGGGGGCATCCAAGGTGTTGATTCCTTTCTTTTTCTA 345 *********** *************** ***** * *********************** consensus_2354#0 AGGAATGTAACTACTTGCAC-TGCACCCCGTCCCCTCAGTAGGGGTTCGTCGCTTCCCTT 366 consensus_2354#1 AGGAATGTAACTACTTGCACATGGACCCCGGTCCCTCAGTAAGGGTTCGNCGCTATCCCT 405 ******************** ** ****** ********* ******* **** ** * consensus_2354#0 TTTAAGACTTT---TCTTTTTTCCATTTT-AAAACGCAACAAA-ACAGCATAAGAACGCC 421 consensus_2354#1 TTTAAGACCTTATCCTTTGTTTCCATTTTTAAAACGCAACAAACACGGAATAAGAACGC- 464 ******** ** ** ********** ************* ** * ********** consensus_2354#0 GTTCGAAGAAAACTGCAAAAAAACGCCATCCGCGGCCAAACCGGCAGGGTGCGGACCGAC 481 consensus_2354#1 GTTCGAAGA--------------------------------------------------- 473 ********* consensus_2354#0 ACAGACAGCAAGGCGCGATGTAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 541 consensus_2354#1 ------------------------------------------------------------ consensus_2354#0 AGCGAGAAGGGGGTGAGAGACACATTTCCTAACTTATTTATTTAAACGCACACGCACCGT 601 consensus_2354#1 ------------------------------------------------------------ consensus_2354#0 CGGCAGTCGGTCCCGACACGGCGGCCAGGGGGTGGATCCCCGGTTGGGCGGCAGTTTTTC 661 consensus_2354#1 ------------------------------------------------------------ consensus_2354#0 TTTCGGTTTTTTATTTTTATTTTTCTTAATTTATTGCATTGTGATTCTGTGAGCGGTAGA 721 consensus_2354#1 ------------------------------------------------------------ consensus_2354#0 AGGAAAAAGGGGAG 735 consensus_2354#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||