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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2360#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 752 fasta sequence
[GAATNGCCAGGNTTNNTGGTGCGTAAACGTNACAGCGGAGCCATCAGCAATTCCCAACCGCATCGGCACCGCTCGGGTTCTGTGCCCAGGGATTTCGTTTGTTTAGTTTTAGCGGANAATATGTAACTGCGCTTCGCCAACGACAACGATGTGACCGGGAGCAATTGCACCGCTGAGCCCAAATCTGGCAAGGCTGANAGGACTGTGTNCCCCGGAAAATTCCCCCAGGGACCCACATTTTGGCTTAACTTTAAAAGCCCACGTTTGGCCTTAGCAAACACNCTNACCCTGGAAAGGGCATTTNTACCGCCAAACCGNGCANTTTTGAGGATNTGGNCGGTGTGCCCCAGACTAGCAGAGGGCTTTATACACACGGGTGACAGNAAGACCANATAACGATATTTTTCTCCCNCAAAAGGGCCTTTATGGGCNGCGTCCNCCCAAACANGGTGGCCCCCTTTATGGGGGATANACNCCCCACGGGTGNGGGTAANANGCGTGAAACGAACGACCTTATTTACACCAAATTATACGTAAAAAGTACTCACAAAAAGNTGTGGGAACAGCGTGGAGTTGGGGCGTTACTCCCCGGNGAAACACAGTTTCCNCACACAAGGTTTCTTCCGCNTGACCACGTAGACCGGTAGTTTTAANCCGANAAAGTTTCTAAATTTTAACNCCCCNGGTAAATAAAGTGTGCACACCGGGGCACCATAAGTGTGCACATTGGNGGCCGCAACTAAAACACGCGT]
[+] EMBL AL697610 [GAATNGCCAGGNTTNNTGGTGCGTAAACGTNACAGCGGAGCCATCAGCAATTCCCAACCGCATCGGCACCGCTCGGGTTCTGTGCCCAGGGATTTCGTTTGTTTAGTTTTAGCGGANAATATGTAACTGCGCTTCGCCAACGACAACGATGTGACCGGGAGCAATTGCACCGCTGAGCCCAAATCTGGCAAGGCTGANAGGACTGTGTNCCCCGGAAAATTCCCCCAGGGACCCACATTTTGGCTTAACTTTAAAAGCCCACGTTTGGCCTTAGCAAACACNCTNACCCTGGAAAGGGCATTTNTACCGCCAAACCGNGCANTTTTGAGGATNTGGNCGGTGTGCCCCAGACTAGCAGAGGGCTTTATACACACGGGTGACAGNAAGACCANATAACGATATTTTTCTCCCNCAAAAGGGCCTTTATGGGCNGCGTCCNCCCAAACANGGTGGCCCCCTTTATGGGGGATANACNCCCCACGGGTGNGGGTAANANGCGTGAAACGAACGACCTTATTTACACCAAATTATACGTAAAAAGTACTCACAAAAAGNTGTGGGAACAGCGTGGAGTTGGGGCGTTACTCCCCGGNGAAACACAGTTTCCNCACACAAGGTTTCTTCCGCNTGACCACGTAGACCGGTAGTTTTAANCCGANAAAGTTTCTAAATTTTAACNCCCCNGGTAAATAAAGTGTGCACACCGGGGCACCATAAGTGTGCACATTGGNGGCCGCAACTAAAACACGCGT]
consensusID : consensus_2360#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence
[CCGCGGACGCGTGGGCGGCCACCGCTCGGGTGCTGTGCCCAGGGATTTCGTTTGTTTAGTTTTAAGGAAATATGTAACTGCGCTTCGCCAACGACAACGATGGACCGGGAGCAATTGCACCGCGAGCCCAAATCTGGCAAGGCGAAGGACGGCCCGATCCGCTGTATACTGCTGAGCGAGTTCCACGTGGTGGCGGGGTCGAAAATCAGCTGCCAGGTGCCGGAGAACTTCATCACCAAGGAGGTGTTCGACTCGATTCGCACGTACATCATACCGAAGCCGCAGCTGCAACGATGCATCCTTACCATCAACACCCTCGGCCACAAGGTGATCGGCTATCCGGTGCGCATCAATCACGTGCGCTACCAGCGGAACTTTTTCTACTTCAACCTGTGCTTCGTGTTCGACTCGTGGTCCCGGACCGTCCAGTACGAGGCGGTGGTGAAGAAGCTCGCCGAGTATCTGCTGATGATGGGAGGAGGAGGGCTCGTTTCTGTCCAACGCGGAGAACAACGGCAACATCTGCAACCTGCTGTCGTGCATACTGCGCGACCTGAACCAGCGCCAGGTCGCGACGAATCGTGGAGGGCGACACCACGATCTACCTCAAGATCGG]
[+] EMBL BM591947 [CCGCGGACGCGTGGGCGGCCACCGCTCGGGTGCTGTGCCCAGGGATTTCGTTTGTTTAGTTTTAAGGAAATATGTAACTGCGCTTCGCCAACGACAACGATGGACCGGGAGCAATTGCACCGCGAGCCCAAATCTGGCAAGGCGAAGGACGGCCCGATCCGCTGTATACTGCTGAGCGAGTTCCACGTGGTGGCGGGGTCGAAAATCAGCTGCCAGGTGCCGGAGAACTTCATCACCAAGGAGGTGTTCGACTCGATTCGCACGTACATCATACCGAAGCCGCAGCTGCAACGATGCATCCTTACCATCAACACCCTCGGCCACAAGGTGATCGGCTATCCGGTGCGCATCAATCACGTGCGCTACCAGCGGAACTTTTTCTACTTCAACCTGTGCTTCGTGTTCGACTCGTGGTCCCGGACCGTCCAGTACGAGGCGGTGGTGAAGAAGCTCGCCGAGTATCTGCTGATGATGGGAGGAGGAGGGCTCGTTTCTGTCCAACGCGGAGAACAACGGCAACATCTGCAACCTGCTGTCGTGCATACTGCGCGACCTGAACCAGCGCCAGGTCGCGACGAATCGTGGAGGGCGACACCACGATCTACCTCAAGATCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2360#0 GAATNGCCAGGNTTNNTGGTGCGTAAACGTNACAGCGGAGCCATCAGCAATTCCCAACCG 60
consensus_2360#1 ---------------------------------------------------CCGCGGACG 9
* * **
consensus_2360#0 CATCGGC----ACCGCTCGGGTTCTGTGCCCAGGGATTTCGTTTGTTTAGTTTTAGCGGA 116
consensus_2360#1 CGTGGGCGGCCACCGCTCGGGTGCTGTGCCCAGGGATTTCGTTTGTTTAGTTTTAA--GG 67
* * *** *********** ******************************** *
consensus_2360#0 NAATATGTAACTGCGCTTCGCCAACGACAACGATGTGACCGGGAGCAATTGCACCGCTGA 176
consensus_2360#1 AAATATGTAACTGCGCTTCGCCAACGACAACGATG-GACCGGGAGCAATTGCACCGC-GA 125
********************************** ********************* **
consensus_2360#0 GCCCAAATCTGGCAAGGCTGANAG-GACTGTGTNCCCCGGAAAATTCCCCCAGGGACCCA 235
consensus_2360#1 GCCCAAATCTGGCAAGGCGAAGGACGGCCCGATCCGCTGTATACTGCTGAGCGAGTTCCA 185
****************** * * * * * * * * * * * * * ***
consensus_2360#0 CATTTTGGCTTAACTTTAAAAGCCCACGTTTGGCCTTAGCAAACACNCTNACCCTGGAAA 295
consensus_2360#1 CGTGGTGGCG-GGGTCGAAAATCAGCTGCCAGGTGCCGGAGAACTTCATCACCAAGGAGG 244
* * **** * **** * * ** * *** * *** ***
consensus_2360#0 GGGCATTTNTACCGCCAAACCGNGCANTTTTGAGGATNTGGNCGGTGTGCCCCAGACTAG 355
consensus_2360#1 TGTTCGACTCGATTCGCACGTACATCATACCGAAGCCGCAGCTGCAACGATGCATCCTTA 304
* * * * ** * * * * ** **
consensus_2360#0 CAGAGGGCTTTATACACACGGGTGACAGNAAGACCANATAAC-GATATTTTTCTCCCNCA 414
consensus_2360#1 CCA-----TCAACACCCTCGGCC-ACAAGGTGATCGGCTATCCGGTGCGCATCAATCACG 358
* * * ** * *** *** ** * ** * * * ** * *
consensus_2360#0 AAAGGGCCTTTATGGGCNGCGTCCNCCCAAACANGGTGGCCCCCTTTATGGGGGATANAC 474
consensus_2360#1 TGCGCTACCAGCGGAACTTTTTCTACTTCAACCTG------TGCTTCGTGTTCGACTCGT 412
* * * * ** * *** * *** ** **
consensus_2360#0 NCCCCACGGGTGNG-GGTAANANGCGTGAAACGAACGACCTTATTTACACCAAATTATAC 533
consensus_2360#1 GGTCCCGGACCGTCCAGTACGAGGCG-GTGGTGAAGAAGCTCGCC--------------- 456
** * * *** * *** * *** * **
consensus_2360#0 GTAAAAAGTACTCACAAAAAGNTGTGGGAACAGCGTGGAGTTGGGGCGTTACTCCCCGGN 593
consensus_2360#1 -----GAGTATCTGCTGA---TGATGGGAGGAG-GAGGGCTCGTTTCTGTCCAACGCGGA 507
**** * * ***** ** * ** * * * * * * ***
consensus_2360#0 GAAACACAGTTTCCNCACACAAGGTTTCTTCCGCNTGACCACGTAGACCGG--TAGTTTT 651
consensus_2360#1 GAACAACGGCAACATC-TGCAACCTGCTGTCGTGCATACTGCGCGACCTGAACCAGCGCC 566
*** ** * * * *** * ** ** ** * * **
consensus_2360#0 AANCCGANAAAGTTTCTAAATTTTAACNCCCCNGG-TAAATAAAGTGTGCACACCGGGGC 710
consensus_2360#1 AGGTCGCGACGAATCGTGGAGGGCGACACCACGATCTACCTCAAGATCGG---------- 616
* ** * * * * ** ** * ** * *** *
consensus_2360#0 ACCATAAGTGTGCACATTGGNGGCCGCAACTAAAACACGCGT 752
consensus_2360#1 ------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||