These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2362#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence [AGGCAAGAATTCGGCACGNAGGACATTATCGTCCTGTACGGGGCGGCGAATCTTTAAAATTCCCGGCCTCAACGCTACCGGCGATCCGCTCAGCCCGCAGGACTTTCTGTTCATGCTGCAGCAGATTCAGGTGAAGGTGGAGAGCGAAACGACGACGGTCCCGCATGCTGGCGTGCCGGTACTGACGAACGATGATCGTACGAGCTGGGCCCGCAATCGACAGCATTTGATCGAGCTGTCGGCGCGCAACGCAACGATGGTGCGTGAAATCGAGGAAGCCGTCGCGCTGCTCATACTGGACACCCACTGTCCGCAGAACTTTTCCGACCTGGCCCAGCTAGCGCTGACCGGTGACATACATTCGAAGTGGACGGACAAGAGCTGCGGTACGATCGCGTTCAAGAACGGGCAGATGGGTTGCTACGGCGAGCACTGCTGCTACGATGGGTCGATCTCGATGTCGATCAGCCTGTACGTGATGATGAGTATCGCGGAGGAAGGCGTACCGGATTGGGACGTGCCGGCGGCGAACCTAATACGCCCCGAGGAGCTCGTGCTCGATTTTGGACGATACGCTGCGGGAGGAAATCGTACGCATGGAGAGCGTCGCTGATGAAATG] [+] EMBL BX469818 [AGGCAAGAATTCGGCACGNAGGACATTATCGTCCTGTACGGGGCGGCGAATCTTTAAAATTCCCGGCCTCAACGCTACCGGCGATCCGCTCAGCCCGCAGGACTTTCTGTTCATGCTGCAGCAGATTCAGGTGAAGGTGGAGAGCGAAACGACGACGGTCCCGCATGCTGGCGTGCCGGTACTGACGAACGATGATCGTACGAGCTGGGCCCGCAATCGACAGCATTTGATCGAGCTGTCGGCGCGCAACGCAACGATGGTGCGTGAAATCGAGGAAGCCGTCGCGCTGCTCATACTGGACACCCACTGTCCGCAGAACTTTTCCGACCTGGCCCAGCTAGCGCTGACCGGTGACATACATTCGAAGTGGACGGACAAGAGCTGCGGTACGATCGCGTTCAAGAACGGGCAGATGGGTTGCTACGGCGAGCACTGCTGCTACGATGGGTCGATCTCGATGTCGATCAGCCTGTACGTGATGATGAGTATCGCGGAGGAAGGCGTACCGGATTGGGACGTGCCGGCGGCGAACCTAATACGCCCCGAGGAGCTCGTGCTCGATTTTGGACGATACGCTGCGGGAGGAAATCGTACGCATGGAGAGCGTCGCTGATGAAATG] consensusID : consensus_2362#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence [CCGCCCACGCGTCCGGGACAAGGTGGAAAGCCACTTCCGGACGGAGCGCGAGGGACCGTGCGCGTCCCACATCATCGTTCTGTACGGGGGGCGAATCTTTAAAATTCCCGGCCTCAACGCTACCGGCGATCCGCTCAGCCCGCAGGACTTTCTGTTCATGCTGCAGCAGATCCAGGTGAAGGTGGAGAGCGAAACGACGACGGTCCCGCATGCTGGCGTGCCGGTGCTGACGAACGATGATCGTACGAGCTGGGCCCGCAATCGACAGCACTTGATCGAGCTGTCGGCGCGCAACGCAACGATGGTGCGTGAAATCGAGGAAGCCGTCGCGCTGCTAATACTGGACACCCACTGTCCGCAGAACTTTTCCGACCTGGCCCAGCTGGCGCTGACCGGTGACATACATTCGAAGTGGACGGACAAGAGCTGCGGTACGATCGCGTTCAAGAACGGGCAGATGGGTTGCTACGGCGAGCACTGCTGCTACGATGGGTCGATCTCGATGTCGATCAGCCTGTACGTGATGATGAGCATCGCGGAGGAAGGCGTACCGGATTGGGACGTGC] [+] EMBL BM597486 [CCGCCCACGCGTCCGGGACAAGGTGGAAAGCCACTTCCGGACGGAGCGCGAGGGACCGTGCGCGTCCCACATCATCGTTCTGTACGGGGGGCGAATCTTTAAAATTCCCGGCCTCAACGCTACCGGCGATCCGCTCAGCCCGCAGGACTTTCTGTTCATGCTGCAGCAGATCCAGGTGAAGGTGGAGAGCGAAACGACGACGGTCCCGCATGCTGGCGTGCCGGTGCTGACGAACGATGATCGTACGAGCTGGGCCCGCAATCGACAGCACTTGATCGAGCTGTCGGCGCGCAACGCAACGATGGTGCGTGAAATCGAGGAAGCCGTCGCGCTGCTAATACTGGACACCCACTGTCCGCAGAACTTTTCCGACCTGGCCCAGCTGGCGCTGACCGGTGACATACATTCGAAGTGGACGGACAAGAGCTGCGGTACGATCGCGTTCAAGAACGGGCAGATGGGTTGCTACGGCGAGCACTGCTGCTACGATGGGTCGATCTCGATGTCGATCAGCCTGTACGTGATGATGAGCATCGCGGAGGAAGGCGTACCGGATTGGGACGTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2362#0 ---------------------------------------------AGGCAAGAATTCG-G 14 consensus_2362#1 CCGCCCACGCGTCCGGGACAAGGTGGAAAGCCACTTCCGGACGGAGCGCGAGGGACCGTG 60 ** ** ** * consensus_2362#0 CACGNAGGACATTATCGTCCTGTACGGGGCGGCGAATCTTTAAAATTCCCGGCCTCAACG 74 consensus_2362#1 CGCGTCCCACATCATCGTTCTGTACGGGG-GGCGAATCTTTAAAATTCCCGGCCTCAACG 119 * ** **** ***** ********** ****************************** consensus_2362#0 CTACCGGCGATCCGCTCAGCCCGCAGGACTTTCTGTTCATGCTGCAGCAGATTCAGGTGA 134 consensus_2362#1 CTACCGGCGATCCGCTCAGCCCGCAGGACTTTCTGTTCATGCTGCAGCAGATCCAGGTGA 179 **************************************************** ******* consensus_2362#0 AGGTGGAGAGCGAAACGACGACGGTCCCGCATGCTGGCGTGCCGGTACTGACGAACGATG 194 consensus_2362#1 AGGTGGAGAGCGAAACGACGACGGTCCCGCATGCTGGCGTGCCGGTGCTGACGAACGATG 239 ********************************************** ************* consensus_2362#0 ATCGTACGAGCTGGGCCCGCAATCGACAGCATTTGATCGAGCTGTCGGCGCGCAACGCAA 254 consensus_2362#1 ATCGTACGAGCTGGGCCCGCAATCGACAGCACTTGATCGAGCTGTCGGCGCGCAACGCAA 299 ******************************* **************************** consensus_2362#0 CGATGGTGCGTGAAATCGAGGAAGCCGTCGCGCTGCTCATACTGGACACCCACTGTCCGC 314 consensus_2362#1 CGATGGTGCGTGAAATCGAGGAAGCCGTCGCGCTGCTAATACTGGACACCCACTGTCCGC 359 ************************************* ********************** consensus_2362#0 AGAACTTTTCCGACCTGGCCCAGCTAGCGCTGACCGGTGACATACATTCGAAGTGGACGG 374 consensus_2362#1 AGAACTTTTCCGACCTGGCCCAGCTGGCGCTGACCGGTGACATACATTCGAAGTGGACGG 419 ************************* ********************************** consensus_2362#0 ACAAGAGCTGCGGTACGATCGCGTTCAAGAACGGGCAGATGGGTTGCTACGGCGAGCACT 434 consensus_2362#1 ACAAGAGCTGCGGTACGATCGCGTTCAAGAACGGGCAGATGGGTTGCTACGGCGAGCACT 479 ************************************************************ consensus_2362#0 GCTGCTACGATGGGTCGATCTCGATGTCGATCAGCCTGTACGTGATGATGAGTATCGCGG 494 consensus_2362#1 GCTGCTACGATGGGTCGATCTCGATGTCGATCAGCCTGTACGTGATGATGAGCATCGCGG 539 **************************************************** ******* consensus_2362#0 AGGAAGGCGTACCGGATTGGGACGTGCCGGCGGCGAACCTAATACGCCCCGAGGAGCTCG 554 consensus_2362#1 AGGAAGGCGTACCGGATTGGGACGTGC--------------------------------- 566 *************************** consensus_2362#0 TGCTCGATTTTGGACGATACGCTGCGGGAGGAAATCGTACGCATGGAGAGCGTCGCTGAT 614 consensus_2362#1 ------------------------------------------------------------ consensus_2362#0 GAAATG 620 consensus_2362#1 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||