These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2381#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 733 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGATGATTTGAGTATTAAACTGAACCGAACCAATAGGAACGTTTTCTTTTCTGTCTGTCAGTCTCTCGCAACTCTCTTCTCTCTCTCTCTATTTCGCTTTCTTAGTGGGGGCTAGCGGGAGTATGTCTTTGAGAAGAGAGAGAGAGAGATAGAGAGAGAGAGAGAGAGATAGAGAGAGAGAGAAAGGATGGGTGCTTGATAGCAACCGGGAACCGGGAGTGAAGACACTTTTTCATAGCAAGCAAAGCAAACCCATTAGATAGCCATAGGGAAATTCTACCGGCGGGCAAAATAATATATATACCCTGGGGCAAGGCTTTGGCGGGTGGGGGGATGAGAATGATTTCCCCCACCGCTTTCACTTTACTACCTTAACCTTAACCTTAACCATCAAAACTAAGAAACAGGGGAATGGCATTCGATATTAAAATGCGAGATGGAGCAGAACCGCTGTGTTACCAGTTACTATAATACGGGAGACATAGCAGAAAGGGAAGGAATAGGGAAGGAAGGCTTTCATGGTAGCGAAGCACAACACTGCAATTAAGCGACTACTACTACTACTACTACTCCTACTACTACTAATACTACAGCTACTACTACACCTACTATTAAGCAATCTACACAAACACGCACACAGACACAACACAACAACAGAAAGAGCAACAGAAGTAACCCCACTAATCCTACCATCTAGAACTTCTCTA] [+] EMBL BM638181 [CCGCCCACGCGTCCGCCCACGCGTCCGGATGATTTGAGTATTAAACTGAACCGAACCAATAGGAACGTTTTCTTTTCTGTCTGTCAGTCTCTCGCAACTCTCTTCTCTCTCTCTCTATTTCGCTTTCTTAGTGGGGGCTAGCGGGAGTATGTCTTTGAGAAGAGAGAGAGAGAGATAGAGAGAGAGAGAGAGAGATAGAGAGAGAGAGAAAGGATGGGTGCTTGATAGCAACCGGGAACCGGGAGTGAAGACACTTTTTCATAGCAAGCAAAGCAAACCCATTAGATAGCCATAGGGAAATTCTACCGGCGGGCAAAATAATATATATACCCTGGGGCAAGGCTTTGGCGGGTGGGGGGATGAGAATGATTTCCCCCACCGCTTTCACTTTACTACCTTAACCTTAACCTTAACCATCAAAACTAAGAAACAGGGGAATGGCATTCGATATTAAAATGCGAGATGGAGCAGAACCGCTGTGTTACCAGTTACTATAATACGGGAGACATAGCAGAAAGGGAAGGAATAGGGAAGGAAGGCTTTCATGGTAGCGAAGCACAACACTGCAATTAAGCGACTACTACTACTACTACTACTCCTACTACTACTAATACTACAGCTACTACTACACCTACTATTAAGCAATCTACACAAACACGCACACAGACACAACACAACAACAGAAAGAGCAACAGAAGTAACCCCACTAATCCTACCATCTAGAACTTCTCTA] consensusID : consensus_2381#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 699 fasta sequence [CCGCCCACGCGTCCGCACATATACAACAAGCACCATACAAGAATCGAGCAAAATCGAAACAATTGAAACATGAATCAAACGTATTAATTTGGCCTTTCTTCCCATAACTCATCAGCCAAGCCCCTTCCCCCCAGTTTTTACGCGTGTGTGTGTGTGTGTGTGTGATGCAGAACAATCTTTAGTAATGTATTTGCGAAAACAAAAGCCACAATAGAGTACCGGATCCATACACCAGGAGCGAATGAATATTTAAATTACAAAACTCAGCAGCACAAAAAAACACACTCACATACACACACACAACAAAGAAGCAAGCTAAGAAATGTACTAAAAACTATTGACAGAAACTCTAATTAAATGCAAAAAAATAATACAAGTTTGGGTTGTGATGGAATCGACGACACTCATGCACCGAGAAACATGGAGAAGAAAAGGTGGCCAATGAGGAGAATCAACATAGGGGGAAAAAGGGAATGCACGTGCGAGAGTGTATAAATATATAAAACACAATACACGGATTTGTTGATTGCGGACAGTAGAGTAGTAGCCGCTGCTAACAAACTAACCAGAGCGCGGACGACGTCCCAGGAACGTTCTTAAAAGATAGAAAGGTCTATTTTTAGTGCATATTGTAGCTGATGATTTGAGTATTAAACTGAACCGAACCAATAGGAACGTTTTCTTTTCTGTCTGTCAGTC] [+] EMBL BM576922 [CCGCCCACGCGTCCGCACATATACAACAAGCACCATACAAGAATCGAGCAAAATCGAAACAATTGAAACATGAATCAAACGTATTAATTTGGCCTTTCTTCCCATAACTCATCAGCCAAGCCCCTTCCCCCCAGTTTTTACGCGTGTGTGTGTGTGTGTGTGTGATGCAGAACAATCTTTAGTAATGTATTTGCGAAAACAAAAGCCACAATAGAGTACCGGATCCATACACCAGGAGCGAATGAATATTTAAATTACAAAACTCAGCAGCACAAAAAAACACACTCACATACACACACACAACAAAGAAGCAAGCTAAGAAATGTACTAAAAACTATTGACAGAAACTCTAATTAAATGCAAAAAAATAATACAAGTTTGGGTTGTGATGGAATCGACGACACTCATGCACCGAGAAACATGGAGAAGAAAAGGTGGCCAATGAGGAGAATCAACATAGGGGGAAAAAGGGAATGCACGTGCGAGAGTGTATAAATATATAAAACACAATACACGGATTTGTTGATTGCGGACAGTAGAGTAGTAGCCGCTGCTAACAAACTAACCAGAGCGCGGACGACGTCCCAGGAACGTTCTTAAAAGATAGAAAGGTCTATTTTTAGTGCATATTGTAGCTGATGATTTGAGTATTAAACTGAACCGAACCAATAGGAACGTTTTCTTTTCTGTCTGTCAGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2381#0 CCGCCCACGCGTCCGCCCACGCGTCC---GGATGATTTGAGTATTAAACTGAACCGAACC 57 consensus_2381#1 CCGCCCACGCGTCCGCACATATACAACAAGCACCATACAAGAATCGAGCAAAATCGAAAC 60 **************** ** * * ** ** ** * * ** **** * consensus_2381#0 AATAGGAACGTTT-TCTTTTCTGTCTGTCAGTCTCTCGCAACTCTCTTCTCTCTCTCTCT 116 consensus_2381#1 AATTGAAACATGAATCAAACGTATTAATTTGGC-CTTTCTTCCCATAACTCATCAGCCAA 119 *** * *** * ** * * * * * ** * * * *** * consensus_2381#0 ATTTCGCTTTCTTAGTGGGGGCTAGCGGGAGTATGTCTTTGAGAAGAG-AGAGAGAGAGA 175 consensus_2381#1 GCCCCTTCCCCCCAGTTTTTACGCGTGTGTGTGTGTGTGTGTGTGATGCAGAACAATCTT 179 * * *** * * * * ** *** * ** * * *** * consensus_2381#0 TAGAGAGAGAGAGAGAGAGATAGAGAGAGAGAGAAAGGATGGGTGCTTGATAGCAACCGG 235 consensus_2381#1 TAGTAATGTATTTGCGAAAACAAAAGCCACAATAGAGTACCGGATCCATACACCAGGAGC 239 *** * * * * * * * * ** * ** * * * ** * consensus_2381#0 GAACCGGGAGTGAAGACACTTTTTCATAGCAAGCAAAGCAAACCCATTAGATAGCCATAG 295 consensus_2381#1 GAATGAATATTTAAATTACAAAA-CTCAGCAGCACAAAAAAACACACTC-ACATACACAC 297 *** * * ** ** * **** ** **** ** * * * ** * consensus_2381#0 GGAAATTCTACCGGCGGGCAAAATAATATAT---ATACCCTGGGGCAAGGCTTTGGCGGG 352 consensus_2381#1 ACACAACAAAGAAGCAAGCTAAGAAATGTACTAAAAACTATTGACAGAAACTCTAAT--- 354 * * * ** ** ** *** ** * ** * * * ** * consensus_2381#0 TGGGGGGATGAGAATGATTTCCCCCACCGCTTTCACTTTACTACCTTAACCTTAACCTTA 412 consensus_2381#1 TAAATGCAAAAAAATAATACAAGTTTGGGTTGTGATGGAATCGACGACACTCATGCACCG 414 * * * * *** ** * * * * * * ** * consensus_2381#0 ACCATCAAAACTAAGAAACAGGGGAATGGCATTCGATATTAAAATGCGAGATGGAGCAGA 472 consensus_2381#1 AGAAACATGGAGAAGAAA-AGGTGGCCAATGAGGAGAATCAACATAGGGGGAAAAAGGGA 473 * * ** ****** *** * ** ** ** * * * ** consensus_2381#0 ACCGCTGTGTTACCAGTTACTATAATACGGGAGACATAGCAGAAAGGGAAGGAATAGGGA 532 consensus_2381#1 ATGCACGTGCGAGAGTGTATAAATATATAAAACACAATACACGGATTTGTTGATTGCGGA 533 * *** * ** * *** * *** ** * ** * *** consensus_2381#0 AGGAAGGCTTTCATGGTAGCGAAGCACAACACTGCAATTA-AGCGACTACTAC-TACTAC 590 consensus_2381#1 CAGTAGA-----GTAGTAGCCGCTGCTAACAAACTAACCAGAGCGCGGACGACGTCCCAG 588 * ** * ***** **** ** * **** ** ** * * * consensus_2381#0 TACTACTCCTACTACTACTAATACTACAGCTACTACTACACCTACTATTAAGCAATCTAC 650 consensus_2381#1 GAACGTTCTTAA-AAGATAGAAAGGTCTATTTTTAGTGCATATTGTAGCTGATGATTTGA 647 * ** ** * * * * * * ** * ** * ** ** * consensus_2381#0 ACAAACACGCACACAGACACAACACAACAACAGAAAGAGCAACAGAAGTAACCCCACTAA 710 consensus_2381#1 GTA-----TTAAACTGAACCGA---ACCAATAGGAACGTTTTCTTTTCTG--TCTGTCAG 697 * * ** ** * * * *** ** ** * * * * consensus_2381#0 TCCTACCATCTAGAACTTCTCTA 733 consensus_2381#1 TC--------------------- 699 ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||