These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2454#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 772 fasta sequence [CTTTTGATTATTGCAGTATACGGCGAGGAGCAAAATGCACTTCGTCAACTGATTTCGAAGCGCGGTCCTGTAGCTTTAAGTCGTGCAATATCATCTTGCAAACAGGGACGTCGACAGGATTGTGAGGACTGTTCTACAGTAAAAATTTGTAGCTACGATCAGACCGCTCTTACATCCTATCGCTGTCAAGATGTAGATCCAGCTAAGCCTTATTGTACAGGTGAAGGAATATGCTCAGAAACGCAAGAAGATGGTGTTGTGTGCAACGAAGCGAATGAATTGTGTCCGATGAATTCTCCTGGGTTCTATCCTGACCCTTCAAATTGCACTAGATATTTGTATTGTGATTCTGAAATGTTAGGATATGAGCAAAACTGCTTAGCGGTCAATAATGTGTACAACCAGACTACGGCTGCTTGCTTCCTTAAGCGCCGTTCATCTGATTGCTTCCAGGTGGATTGTAAAAATTCTCGAAACATAAATAAGTGGTTTGTATACACACCTTTCCCACAGCTGTATTTTCTGTGCTCGTCAAATGGGGCAATCATGTTCAAATGCCCGCGTGAAACTGATGTTTTTGATTTGGACCTAAAACGATGCGAGTTTGAATGTCGCGAAGCGGGAAGATTCGCTCATCCTAATGTCAGAATGTACTACGAATGTGCATTTGTTAGCACCAGCAAGCTCCAGAAGTTTGAACAAACTTGTCCACCTTTACTGGAGTTTAATGCAAGGATCAAAAATGTCTTGAAAAAAAATGACTTGATGAGTT] [+] EMBL BX625900 [CTTTTGATTATTGCAGTATACGGCGAGGAGCAAAATGCACTTCGTCAACTGATTTCGAAGCGCGGTCCTGTAGCTTTAAGTCGTGCAATATCATCTTGCAAACAGGGACGTCGACAGGATTGTGAGGACTGTTCTACAGTAAAAATTTGTAGCTACGATCAGACCGCTCTTACATCCTATCGCTGTCAAGATGTAGATCCAGCTAAGCCTTATTGTACAGGTGAAGGAATATGCTCAGAAACGCAAGAAGATGGTGTTGTGTGCAACGAAGCGAATGAATTGTGTCCGATGAATTCTCCTGGGTTCTATCCTGACCCTTCAAATTGCACTAGATATTTGTATTGTGATTCTGAAATGTTAGGATATGAGCAAAACTGCTTAGCGGTCAATAATGTGTACAACCAGACTACGGCTGCTTGCTTCCTTAAGCGCCGTTCATCTGATTGCTTCCAGGTGGATTGTAAAAATTCTCGAAACATAAATAAGTGGTTTGTATACACACCTTTCCCACAGCTGTATTTTCTGTGCTCGTCAAATGGGGCAATCATGTTCAAATGCCCGCGTGAAACTGATGTTTTTGATTTGGACCTAAAACGATGCGAGTTTGAATGTCGCGAAGCGGGAAGATTCGCTCATCCTAATGTCAGAATGTACTACGAATGTGCATTTGTTAGCACCAGCAAGCTCCAGAAGTTTGAACAAACTTGTCCACCTTTACTGGAGTTTAATGCAAGGATCAAAAATGTCTTGAAAAAAAATGACTTGATGAGTT] consensusID : consensus_2454#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 729 fasta sequence [GCAAGAATCGCCCCGAGGCGTCACTGATTTCGAAGCGCGGTCCTGTAGCTTTAAGTCGTGCAATATCATCTTGCAAACAGGGACGTCGACAGGATTGTGAGGACTGTTCTACAGTAAAAATTTGTAGCTACGATCAGACCGCTCTTACATCCTATCGCTGTCAAGATGTAGATCCAGCTAAGCCTTATTGTACAGGTGAAGGAATATGCTCAGAAACGCAAGAAGATGGTGTTGTGTGCAACGAAGCGAATGAATTGTGTCCGATGAATTCTCCTGGGTTCTATCCTGACCCTTCAAATTTGCACTAGATATTTGTATTGTGATTCTGAAATGTTAGGATATGAGCAAAACTGCTTAGCGGTCAATAATGTGTACAACCAGACTACGGCTGCTTGCTTCCTTAAGCGCCGTTCATCTGATTGCTTCCAGGTGGCATTGTAAAAATTCTCGAAACATAAATAAGTGGTTTGTATACACACCTTTCCCACAGCTGTATTTTCTGTGCTCGTCAAATGGGGCAATCATGTTCAAATGCCCGCGTGAAACTGATGTTTGATTTGGACCTAAAACGATGCGAGTTTGAATGTCGCGAAGCGGGAAGATTCGCTCATCCTAATGTCAGAATGTACTACGAATGTGCATTTGTTAGCACCAGCAAGCTCCAGAAGTTTGAACAAACTTGTCCACCTTTACTGGAGTTTAATGCAAAGGATCAAAAATGTCTTGAAA] [+] EMBL AL930321 [GCAAGAATCGCCCCGAGGCGTCACTGATTTCGAAGCGCGGTCCTGTAGCTTTAAGTCGTGCAATATCATCTTGCAAACAGGGACGTCGACAGGATTGTGAGGACTGTTCTACAGTAAAAATTTGTAGCTACGATCAGACCGCTCTTACATCCTATCGCTGTCAAGATGTAGATCCAGCTAAGCCTTATTGTACAGGTGAAGGAATATGCTCAGAAACGCAAGAAGATGGTGTTGTGTGCAACGAAGCGAATGAATTGTGTCCGATGAATTCTCCTGGGTTCTATCCTGACCCTTCAAATTTGCACTAGATATTTGTATTGTGATTCTGAAATGTTAGGATATGAGCAAAACTGCTTAGCGGTCAATAATGTGTACAACCAGACTACGGCTGCTTGCTTCCTTAAGCGCCGTTCATCTGATTGCTTCCAGGTGGCATTGTAAAAATTCTCGAAACATAAATAAGTGGTTTGTATACACACCTTTCCCACAGCTGTATTTTCTGTGCTCGTCAAATGGGGCAATCATGTTCAAATGCCCGCGTGAAACTGATGTTTGATTTGGACCTAAAACGATGCGAGTTTGAATGTCGCGAAGCGGGAAGATTCGCTCATCCTAATGTCAGAATGTACTACGAATGTGCATTTGTTAGCACCAGCAAGCTCCAGAAGTTTGAACAAACTTGTCCACCTTTACTGGAGTTTAATGCAAAGGATCAAAAATGTCTTGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2454#0 CTTTTGATTATTGCAGTATACGGCGAGGAGCAAAATGCACTTCGTCAACTGATTTCGAAG 60 consensus_2454#1 ----------------------GCAAGAATCGC--CCCGAGGCGTCA-CTGATTTCGAAG 35 ** ** * * * ***** ************ consensus_2454#0 CGCGGTCCTGTAGCTTTAAGTCGTGCAATATCATCTTGCAAACAGGGACGTCGACAGGAT 120 consensus_2454#1 CGCGGTCCTGTAGCTTTAAGTCGTGCAATATCATCTTGCAAACAGGGACGTCGACAGGAT 95 ************************************************************ consensus_2454#0 TGTGAGGACTGTTCTACAGTAAAAATTTGTAGCTACGATCAGACCGCTCTTACATCCTAT 180 consensus_2454#1 TGTGAGGACTGTTCTACAGTAAAAATTTGTAGCTACGATCAGACCGCTCTTACATCCTAT 155 ************************************************************ consensus_2454#0 CGCTGTCAAGATGTAGATCCAGCTAAGCCTTATTGTACAGGTGAAGGAATATGCTCAGAA 240 consensus_2454#1 CGCTGTCAAGATGTAGATCCAGCTAAGCCTTATTGTACAGGTGAAGGAATATGCTCAGAA 215 ************************************************************ consensus_2454#0 ACGCAAGAAGATGGTGTTGTGTGCAACGAAGCGAATGAATTGTGTCCGATGAATTCTCCT 300 consensus_2454#1 ACGCAAGAAGATGGTGTTGTGTGCAACGAAGCGAATGAATTGTGTCCGATGAATTCTCCT 275 ************************************************************ consensus_2454#0 GGGTTCTATCCTGACCCTTCAAATT-GCACTAGATATTTGTATTGTGATTCTGAAATGTT 359 consensus_2454#1 GGGTTCTATCCTGACCCTTCAAATTTGCACTAGATATTTGTATTGTGATTCTGAAATGTT 335 ************************* ********************************** consensus_2454#0 AGGATATGAGCAAAACTGCTTAGCGGTCAATAATGTGTACAACCAGACTACGGCTGCTTG 419 consensus_2454#1 AGGATATGAGCAAAACTGCTTAGCGGTCAATAATGTGTACAACCAGACTACGGCTGCTTG 395 ************************************************************ consensus_2454#0 CTTCCTTAAGCGCCGTTCATCTGATTGCTTCCAGGTGG-ATTGTAAAAATTCTCGAAACA 478 consensus_2454#1 CTTCCTTAAGCGCCGTTCATCTGATTGCTTCCAGGTGGCATTGTAAAAATTCTCGAAACA 455 ************************************** ********************* consensus_2454#0 TAAATAAGTGGTTTGTATACACACCTTTCCCACAGCTGTATTTTCTGTGCTCGTCAAATG 538 consensus_2454#1 TAAATAAGTGGTTTGTATACACACCTTTCCCACAGCTGTATTTTCTGTGCTCGTCAAATG 515 ************************************************************ consensus_2454#0 GGGCAATCATGTTCAAATGCCCGCGTGAAACTGATGTTTTTGATTTGGACCTAAAACGAT 598 consensus_2454#1 GGGCAATCATGTTCAAATGCCCGCGTGAAACTGATGTTT--GATTTGGACCTAAAACGAT 573 *************************************** ******************* consensus_2454#0 GCGAGTTTGAATGTCGCGAAGCGGGAAGATTCGCTCATCCTAATGTCAGAATGTACTACG 658 consensus_2454#1 GCGAGTTTGAATGTCGCGAAGCGGGAAGATTCGCTCATCCTAATGTCAGAATGTACTACG 633 ************************************************************ consensus_2454#0 AATGTGCATTTGTTAGCACCAGCAAGCTCCAGAAGTTTGAACAAACTTGTCCACCTTTAC 718 consensus_2454#1 AATGTGCATTTGTTAGCACCAGCAAGCTCCAGAAGTTTGAACAAACTTGTCCACCTTTAC 693 ************************************************************ consensus_2454#0 TGGAGTTTAATGCAA-GGATCAAAAATGTCTTGAAAAAAAATGACTTGATGAGTT 772 consensus_2454#1 TGGAGTTTAATGCAAAGGATCAAAAATGTCTTGAAA------------------- 729 *************** ******************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||