These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2536#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 721 fasta sequence [GAATCCCCGAGGTCCAATCCAACCCTGGGCCGAGCACAGTAGACAAAATAATTGGAAATCTTAAGCAAAGCAATCCGCTGGAGAGAATGAGAGAGCGAGAGCGTGCGGAATGGTCCATTTGGGTAAAAAGTTATGTCAACATACAGCAGCAGGCAACTTTAATGACTTTAAGAGCAAAAGTAGGCGCCATGAGCGTAATGTGACTGCGACTTCGAGACGACTTCCGTCCGAATTCGTCGTCTTCGCCGCTTGTATGCCAATGGACAACCGCACGCATACACACACAGACATACAAACACACTAAACCCAAACAAAAAGGACGTAAATTTCATGCAGAGAAGGCTTCTTCGCCGACCTGGCCGGCAGACTGACTCTGGCTGGCTTTAAATGCTATGAACGGTCGAACGATGGGAGTGCGGCAAACGTAGCTGAGTGCTGTNTTAGTGATAACGCGACTACTTTCTGTCTTATATGTTTNATATCACTATTCTTTNCTTTCCTGTACACTGACGAGATAACTAACGCATCGCTACGCTACTTAGGACGGTAATCTTACGTTAACTTTTNGTGGCCTAGTAACCGTTTGAACAAAGCGTAGAATTCCGTNCAGCTCACGCTTTNCGAAGAACGCAAGTTCACACTAAGGGTACTTACTACTACTAACACGACGCACACCTCCACATTACGCACCCAGCTGACAGAAACACCCCCGCTCAGCAAN] [+] EMBL AL931239 [GAATCCCCGAGGTCCAATCCAACCCTGGGCCGAGCACAGTAGACAAAATAATTGGAAATCTTAAGCAAAGCAATCCGCTGGAGAGAATGAGAGAGCGAGAGCGTGCGGAATGGTCCATTTGGGTAAAAAGTTATGTCAACATACAGCAGCAGGCAACTTTAATGACTTTAAGAGCAAAAGTAGGCGCCATGAGCGTAATGTGACTGCGACTTCGAGACGACTTCCGTCCGAATTCGTCGTCTTCGCCGCTTGTATGCCAATGGACAACCGCACGCATACACACACAGACATACAAACACACTAAACCCAAACAAAAAGGACGTAAATTTCATGCAGAGAAGGCTTCTTCGCCGACCTGGCCGGCAGACTGACTCTGGCTGGCTTTAAATGCTATGAACGGTCGAACGATGGGAGTGCGGCAAACGTAGCTGAGTGCTGTNTTAGTGATAACGCGACTACTTTCTGTCTTATATGTTTNATATCACTATTCTTTNCTTTCCTGTACACTGACGAGATAACTAACGCATCGCTACGCTACTTAGGACGGTAATCTTACGTTAACTTTTNGTGGCCTAGTAACCGTTTGAACAAAGCGTAGAATTCCGTNCAGCTCACGCTTTNCGAAGAACGCAAGTTCACACTAAGGGTACTTACTACTACTAACACGACGCACACCTCCACATTACGCACCCAGCTGACAGAAACACCCCCGCTCAGCAAN] consensusID : consensus_2536#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence [CCGCATGAGCGTAATGTGACTGCGACTTCGAGACGACTTCCGTCCGAATTCGTCGTCTTCGCCGCTTGTATGCCAATGGACAACCGCACGCATACACACACAGACATACAAACACACTAAACCCAAACAAAAAGGACGTAAATTTCATGCAGAGAAGGCTTCTTCGCCGACCGGCCGGCAGACTGACTCTGGCTGGCTTTAAATGCTATGAAGGTCGAACGATGGGAGGCGGCAAACGTAGTGAGTGCTGTTTTAGTGATAAGCGATACTTTCTGTTTATATGTTTTATATCATATTCTTTTCTTTTTTTGTACACTGACGAGATAACTAAGATCGTACGTATTAGGACGGTAATTTTTAGTTAATTTTGTGGCTAGTTTTTGTTTGAACAAAGGCAGAATTTTGTTCGCTCACGTTTCGAAGAACGCAAGTTCACACTAAGGTACTACTACTACTAAACGACGCACACCTCCACATTACGCACCAGCGACAGAAAACCCCCGTAAGAAATCGAGCTAGAAAGCAACGCGATTATCAACTCGTCCCGATCCCGTCGATTCGCGTATGATAACGTTAGCTCTAGAGGAAGGTGTGTCAGAAATGCACCTTTTTACAGTCACTTTTTGGCAGTTTAGGGAAAGG] [+] EMBL BM643530 [CCGCATGAGCGTAATGTGACTGCGACTTCGAGACGACTTCCGTCCGAATTCGTCGTCTTCGCCGCTTGTATGCCAATGGACAACCGCACGCATACACACACAGACATACAAACACACTAAACCCAAACAAAAAGGACGTAAATTTCATGCAGAGAAGGCTTCTTCGCCGACCGGCCGGCAGACTGACTCTGGCTGGCTTTAAATGCTATGAAGGTCGAACGATGGGAGGCGGCAAACGTAGTGAGTGCTGTTTTAGTGATAAGCGATACTTTCTGTTTATATGTTTTATATCATATTCTTTTCTTTTTTTGTACACTGACGAGATAACTAAGATCGTACGTATTAGGACGGTAATTTTTAGTTAATTTTGTGGCTAGTTTTTGTTTGAACAAAGGCAGAATTTTGTTCGCTCACGTTTCGAAGAACGCAAGTTCACACTAAGGTACTACTACTACTAAACGACGCACACCTCCACATTACGCACCAGCGACAGAAAACCCCCGTAAGAAATCGAGCTAGAAAGCAACGCGATTATCAACTCGTCCCGATCCCGTCGATTCGCGTATGATAACGTTAGCTCTAGAGGAAGGTGTGTCAGAAATGCACCTTTTTACAGTCACTTTTTGGCAGTTTAGGGAAAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2536#0 GAATCCCCGAGGTCCAATCCAACCCTGGGCCGAGCACAGTAGACAAAATAATTGGAAATC 60 consensus_2536#1 ------------------------------------------------------------ consensus_2536#0 TTAAGCAAAGCAATCCGCTGGAGAGAATGAGAGAGCGAGAGCGTGCGGAATGGTCCATTT 120 consensus_2536#1 ------------------------------------------------------------ consensus_2536#0 GGGTAAAAAGTTATGTCAACATACAGCAGCAGGCAACTTTAATGACTTTAAGAGCAAAAG 180 consensus_2536#1 ------------------------------------------------------------ consensus_2536#0 TAGGCGCCATGAGCGTAATGTGACTGCGACTTCGAGACGACTTCCGTCCGAATTCGTCGT 240 consensus_2536#1 ----CCGCATGAGCGTAATGTGACTGCGACTTCGAGACGACTTCCGTCCGAATTCGTCGT 56 * ***************************************************** consensus_2536#0 CTTCGCCGCTTGTATGCCAATGGACAACCGCACGCATACACACACAGACATACAAACACA 300 consensus_2536#1 CTTCGCCGCTTGTATGCCAATGGACAACCGCACGCATACACACACAGACATACAAACACA 116 ************************************************************ consensus_2536#0 CTAAACCCAAACAAAAAGGACGTAAATTTCATGCAGAGAAGGCTTCTTCGCCGACCTGGC 360 consensus_2536#1 CTAAACCCAAACAAAAAGGACGTAAATTTCATGCAGAGAAGGCTTCTTCGCCGACC-GGC 175 ******************************************************** *** consensus_2536#0 CGGCAGACTGACTCTGGCTGGCTTTAAATGCTATGAACGGTCGAACGATGGGAGTGCGGC 420 consensus_2536#1 CGGCAGACTGACTCTGGCTGGCTTTAAATGCTATGAA-GGTCGAACGATGGGAG-GCGGC 233 ************************************* **************** ***** consensus_2536#0 AAACGTAGCTGAGTGCTGTNTTAGTGATAACGCGACTACTTTCTGTCTTATATGTTTNAT 480 consensus_2536#1 AAACGTAG-TGAGTGCTGTTTTAGTGATAA-GCGA-TACTTTCTGT-TTATATGTTTTAT 289 ******** ********** ********** **** ********** ********** ** consensus_2536#0 ATCACTATTCTTTNCTTTCCTGTACACTGACGAGATAACTAACGCATCGCTACGCTACTT 540 consensus_2536#1 ATCATATTCTTTTCTTTTTTTGTACACTGACGAGATAACTAAG--ATCG-TACGT--ATT 344 **** * *** *** ********************** **** **** ** consensus_2536#0 AGGACGGTAATCTTACGTTAACTTTTNGTGGCCTAGTAACCGTTTGAACAAAGCGTAGAA 600 consensus_2536#1 AGGACGGTAATTTTTAGTTAA--TTTTGTGGC-TAGTTTTTGTTTGAACAAAG-GCAGAA 400 *********** ** ***** *** ***** **** ************ * **** consensus_2536#0 TTCCGTNCAGCTCACGCTTTNCGAAGAACGCAAGTTCACACTAAGGGTACTTACTACTAC 660 consensus_2536#1 TTTTGTTC-GCTCACG--TTTCGAAGAACGCAAGTTCACACTAAGG-TACT-ACTACTAC 455 ** ** * ******* ** ************************* **** ******** consensus_2536#0 TAACACGACGCACACCTCCACATTACGCACCCAGCTGACAGAAACACCCCCGCTCAGCAA 720 consensus_2536#1 TAA-ACGACGCACACCTCCACATTACGCACC-AGC-GACAGAAA-ACCCCCG-TAAGAAA 510 *** *************************** *** ******** ******* * ** ** consensus_2536#0 N----------------------------------------------------------- 721 consensus_2536#1 TCGAGCTAGAAAGCAACGCGATTATCAACTCGTCCCGATCCCGTCGATTCGCGTATGATA 570 consensus_2536#0 ------------------------------------------------------------ consensus_2536#1 ACGTTAGCTCTAGAGGAAGGTGTGTCAGAAATGCACCTTTTTACAGTCACTTTTTGGCAG 630 consensus_2536#0 ------------ consensus_2536#1 TTTAGGGAAAGG 642 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||