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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2592#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence
[CCGCGGACGCGTGGGCGCGCGGTTCACACCGGTGTACGGGTGACGTTCGCTGCTCTCGCTCTCGCTGTGTGTGCGGCACCACCACTGTTCACTGACGACGACGGCACGGACCGTGTGCGTGTGTTTCTAAAATGCTTTTCGGGTCCCGTAAAAGTGGCCCGTGCCTTCTCCGTTGTTGGGCCAGTGAAGGAAAGTGAAAAAAAACGTGTGCAGATCGTGAAAAAACGGTTGATTGTAAGGATTACGATACTGAATAGTGTGCTACTGAATGGTTTGGGTGTGTGTTTTGTGACAACCCCTCCCCTTTCTGCCCAGTGCAGAATGCACCCCCTTGGTGAGTGAGGAGGATGGGAGGCATGTGAATGTAAGCTGGCTTTAAGTGTTGTGCATACAGTGAAATGATTTAATTAAAATAAAGTAAAAAGTAGAAAAGTAAATAAATATCGAAAAATCATCAATAATAAGAAAGATTCCATTCAAAGCAGTGAAAGATATTTGGAAAAGAGTGTAATATAGTGGCAAAGTGGTGAATTTTTCAAATCTAATTTCCAGCAAAATCGGTATATTTGCTTCATTATAAAAAAATACTAAGTGCTTGTGAATGATTAAATAAAATCCATTCGTGTGTTGTGAGTGTGCAGAAATTAC]
[+] EMBL BM638641 [CCGCGGACGCGTGGGCGCGCGGTTCACACCGGTGTACGGGTGACGTTCGCTGCTCTCGCTCTCGCTGTGTGTGCGGCACCACCACTGTTCACTGACGACGACGGCACGGACCGTGTGCGTGTGTTTCTAAAATGCTTTTCGGGTCCCGTAAAAGTGGCCCGTGCCTTCTCCGTTGTTGGGCCAGTGAAGGAAAGTGAAAAAAAACGTGTGCAGATCGTGAAAAAACGGTTGATTGTAAGGATTACGATACTGAATAGTGTGCTACTGAATGGTTTGGGTGTGTGTTTTGTGACAACCCCTCCCCTTTCTGCCCAGTGCAGAATGCACCCCCTTGGTGAGTGAGGAGGATGGGAGGCATGTGAATGTAAGCTGGCTTTAAGTGTTGTGCATACAGTGAAATGATTTAATTAAAATAAAGTAAAAAGTAGAAAAGTAAATAAATATCGAAAAATCATCAATAATAAGAAAGATTCCATTCAAAGCAGTGAAAGATATTTGGAAAAGAGTGTAATATAGTGGCAAAGTGGTGAATTTTTCAAATCTAATTTCCAGCAAAATCGGTATATTTGCTTCATTATAAAAAAATACTAAGTGCTTGTGAATGATTAAATAAAATCCATTCGTGTGTTGTGAGTGTGCAGAAATTAC]
consensusID : consensus_2592#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 646 fasta sequence
[CCGCTCGCTGGCAAAAGTTCGTCGTGGCCTGCTCAGTTTCGGCTTATGTTTCGCGCGGTTCACACCGGTGTACGGGTGACGTTCGCTGCTCTCGCTCTCGCTGTGTGTGCGGCACCACCACTGTTCACTGACGACGACGGCACGGACCGTGTGCGTGTGTTTCTAAAATGCTTTTCGGGTCCCGTAAAAGTGGCCCGTGCCTTCTCCGTTGTTGGGCCAGTGAAGGTTGATTGTAAGGATTACGATACTGAATAGTGTGCTACTGAATGGTTTGGGTGTGTGTTTTGTGACAACCCCTCCCCTTTCTGCCCAGTGCAGAATGCACCCCCTTGGTGAGTGAGGAGGATGGGAGGCATGTGAATGTAAGCTGGCTTTAAGTGTTGTGCATACAGTGAAATGATTTAATTAAAATAAAGTAAAAAGTAGAAAAGTAAATAAATATCGAAAAATCATCAATAATAAGAAAGATTCCATTCAAAGCAGTGAAAGATATTTGGAAAAGAGTGTAATATAGTGGCAAAGTGGTGAATTTTTCAAATCTAATTTCCAGCAAAATCGGTATATTTGCTTCATTATAAAAAAATACTAAGTGCTTGTGAATGATTAAATAAAATCCATTCGTGTGTTGTGAGTGTGCAGAAATTAC]
[+] EMBL BM637370 [CCGCTCGCTGGCAAAAGTTCGTCGTGGCCTGCTCAGTTTCGGCTTATGTTTCGCGCGGTTCACACCGGTGTACGGGTGACGTTCGCTGCTCTCGCTCTCGCTGTGTGTGCGGCACCACCACTGTTCACTGACGACGACGGCACGGACCGTGTGCGTGTGTTTCTAAAATGCTTTTCGGGTCCCGTAAAAGTGGCCCGTGCCTTCTCCGTTGTTGGGCCAGTGAAGGTTGATTGTAAGGATTACGATACTGAATAGTGTGCTACTGAATGGTTTGGGTGTGTGTTTTGTGACAACCCCTCCCCTTTCTGCCCAGTGCAGAATGCACCCCCTTGGTGAGTGAGGAGGATGGGAGGCATGTGAATGTAAGCTGGCTTTAAGTGTTGTGCATACAGTGAAATGATTTAATTAAAATAAAGTAAAAAGTAGAAAAGTAAATAAATATCGAAAAATCATCAATAATAAGAAAGATTCCATTCAAAGCAGTGAAAGATATTTGGAAAAGAGTGTAATATAGTGGCAAAGTGGTGAATTTTTCAAATCTAATTTCCAGCAAAATCGGTATATTTGCTTCATTATAAAAAAATACTAAGTGCTTGTGAATGATTAAATAAAATCCATTCGTGTGTTGTGAGTGTGCAGAAATTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2592#0 -----------------------------------CCGCGGACGCGTGGG-CGCGCGGTT 24
consensus_2592#1 CCGCTCGCTGGCAAAAGTTCGTCGTGGCCTGCTCAGTTTCGGCTTATGTTTCGCGCGGTT 60
* * ** *********
consensus_2592#0 CACACCGGTGTACGGGTGACGTTCGCTGCTCTCGCTCTCGCTGTGTGTGCGGCACCACCA 84
consensus_2592#1 CACACCGGTGTACGGGTGACGTTCGCTGCTCTCGCTCTCGCTGTGTGTGCGGCACCACCA 120
************************************************************
consensus_2592#0 CTGTTCACTGACGACGACGGCACGGACCGTGTGCGTGTGTTTCTAAAATGCTTTTCGGGT 144
consensus_2592#1 CTGTTCACTGACGACGACGGCACGGACCGTGTGCGTGTGTTTCTAAAATGCTTTTCGGGT 180
************************************************************
consensus_2592#0 CCCGTAAAAGTGGCCCGTGCCTTCTCCGTTGTTGGGCCAGTGAAGGAAAGTGAAAAAAAA 204
consensus_2592#1 CCCGTAAAAGTGGCCCGTGCCTTCTCCGTTGTTGGGCCAGTGAAGG-------------- 226
**********************************************
consensus_2592#0 CGTGTGCAGATCGTGAAAAAACGGTTGATTGTAAGGATTACGATACTGAATAGTGTGCTA 264
consensus_2592#1 ------------------------TTGATTGTAAGGATTACGATACTGAATAGTGTGCTA 262
************************************
consensus_2592#0 CTGAATGGTTTGGGTGTGTGTTTTGTGACAACCCCTCCCCTTTCTGCCCAGTGCAGAATG 324
consensus_2592#1 CTGAATGGTTTGGGTGTGTGTTTTGTGACAACCCCTCCCCTTTCTGCCCAGTGCAGAATG 322
************************************************************
consensus_2592#0 CACCCCCTTGGTGAGTGAGGAGGATGGGAGGCATGTGAATGTAAGCTGGCTTTAAGTGTT 384
consensus_2592#1 CACCCCCTTGGTGAGTGAGGAGGATGGGAGGCATGTGAATGTAAGCTGGCTTTAAGTGTT 382
************************************************************
consensus_2592#0 GTGCATACAGTGAAATGATTTAATTAAAATAAAGTAAAAAGTAGAAAAGTAAATAAATAT 444
consensus_2592#1 GTGCATACAGTGAAATGATTTAATTAAAATAAAGTAAAAAGTAGAAAAGTAAATAAATAT 442
************************************************************
consensus_2592#0 CGAAAAATCATCAATAATAAGAAAGATTCCATTCAAAGCAGTGAAAGATATTTGGAAAAG 504
consensus_2592#1 CGAAAAATCATCAATAATAAGAAAGATTCCATTCAAAGCAGTGAAAGATATTTGGAAAAG 502
************************************************************
consensus_2592#0 AGTGTAATATAGTGGCAAAGTGGTGAATTTTTCAAATCTAATTTCCAGCAAAATCGGTAT 564
consensus_2592#1 AGTGTAATATAGTGGCAAAGTGGTGAATTTTTCAAATCTAATTTCCAGCAAAATCGGTAT 562
************************************************************
consensus_2592#0 ATTTGCTTCATTATAAAAAAATACTAAGTGCTTGTGAATGATTAAATAAAATCCATTCGT 624
consensus_2592#1 ATTTGCTTCATTATAAAAAAATACTAAGTGCTTGTGAATGATTAAATAAAATCCATTCGT 622
************************************************************
consensus_2592#0 GTGTTGTGAGTGTGCAGAAATTAC 648
consensus_2592#1 GTGTTGTGAGTGTGCAGAAATTAC 646
************************
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||