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Anopheles gambiae
cluster # 2593 cluster # 2593       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2593#0 length = 662 sequences # 1  
consensus_2593#1 length = 648 sequences # 1  

consensusID : consensus_2593#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 662
fasta sequence
                              [CGACTTTTGTAGATCTTACCAGAAGCATAGATTGTTGGATGAAAGGCTGATAACTGCCCATGTTGGTGCTATCGGCGCGTTTCAAACTCTTCAACTGGTCACCAATTGATGAGATAAATGTTAAAGGATTGTGAGTGGACTGCTAGGGAGCTGTGTTTCTACAACGTTCCGCAAAACGACATGTATGATTAATTTATGAGGCGTGGTAAATTGCGAAAGTCGGCTCCATTCTCGGGTATGATCGGGAGCAGTTTCCGGAACGATTAACCTCCTTTGCAGACACCCACTGTTGGATAAAGTTTCCATGGAAGTATTGTACTGGATTCTACGACTGTTCGGGTATGCTCCGTTCCGGCTACAGTTGGATGCAGACACACCTGACCGGGATGCATTCGGAACCTGGCGGACGAAACTATACACCATATCTTTCGGATTGGCATATACACTAGCTTTTATAAAATTCATGTCCGAGCTAAAACACACCGGGTTCTCTGCATCGATGATCGAGGGCAAAGGCGAACGTATGTATTTTACTTTCAATTTTTTCACCACCATGTATGGAGTTGTGAACGGTTATGCTGTGCGAGACAAAATTGAAAAATGCTCTACAAGCTGCATGCCGTGGATCAAAAGATAAGCCAATGGAAACGCAACGTCGATCA]

[+] EMBL BX611356             [CGACTTTTGTAGATCTTACCAGAAGCATAGATTGTTGGATGAAAGGCTGATAACTGCCCATGTTGGTGCTATCGGCGCGTTTCAAACTCTTCAACTGGTCACCAATTGATGAGATAAATGTTAAAGGATTGTGAGTGGACTGCTAGGGAGCTGTGTTTCTACAACGTTCCGCAAAACGACATGTATGATTAATTTATGAGGCGTGGTAAATTGCGAAAGTCGGCTCCATTCTCGGGTATGATCGGGAGCAGTTTCCGGAACGATTAACCTCCTTTGCAGACACCCACTGTTGGATAAAGTTTCCATGGAAGTATTGTACTGGATTCTACGACTGTTCGGGTATGCTCCGTTCCGGCTACAGTTGGATGCAGACACACCTGACCGGGATGCATTCGGAACCTGGCGGACGAAACTATACACCATATCTTTCGGATTGGCATATACACTAGCTTTTATAAAATTCATGTCCGAGCTAAAACACACCGGGTTCTCTGCATCGATGATCGAGGGCAAAGGCGAACGTATGTATTTTACTTTCAATTTTTTCACCACCATGTATGGAGTTGTGAACGGTTATGCTGTGCGAGACAAAATTGAAAAATGCTCTACAAGCTGCATGCCGTGGATCAAAAGATAAGCCAATGGAAACGCAACGTCGATCA]


>consensus_2593#0 CGACTTTTGTAGATCTTACCAGAAGCATAGATTGTTGGATGAAAGGCTGATAACTGCCCA TGTTGGTGCTATCGGCGCGTTTCAAACTCTTCAACTGGTCACCAATTGATGAGATAAATG TTAAAGGATTGTGAGTGGACTGCTAGGGAGCTGTGTTTCTACAACGTTCCGCAAAACGAC ATGTATGATTAATTTATGAGGCGTGGTAAATTGCGAAAGTCGGCTCCATTCTCGGGTATG ATCGGGAGCAGTTTCCGGAACGATTAACCTCCTTTGCAGACACCCACTGTTGGATAAAGT TTCCATGGAAGTATTGTACTGGATTCTACGACTGTTCGGGTATGCTCCGTTCCGGCTACA GTTGGATGCAGACACACCTGACCGGGATGCATTCGGAACCTGGCGGACGAAACTATACAC CATATCTTTCGGATTGGCATATACACTAGCTTTTATAAAATTCATGTCCGAGCTAAAACA CACCGGGTTCTCTGCATCGATGATCGAGGGCAAAGGCGAACGTATGTATTTTACTTTCAA TTTTTTCACCACCATGTATGGAGTTGTGAACGGTTATGCTGTGCGAGACAAAATTGAAAA ATGCTCTACAAGCTGCATGCCGTGGATCAAAAGATAAGCCAATGGAAACGCAACGTCGAT CA



consensusID : consensus_2593#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 648
fasta sequence
                              [AGAAGAACGTGCGACTTTTGTAGATCTTACCAGAAGCATAGATTGTTGGATGAAAGGCTGATAACTGAGTAGCTTCCAATTGCCGTGCATCACTCCAATCAAAGGGAAGCATTTACGTACTACGTACGTGTTAGCTGATTATCCTGTGTTACAAATCTTTACACGCTGCAAAATTATTTTAGCCATGTCATTGGTCACAGCAGGGCAGGGAATCCGATCGTTGTGATTATTCTCAGTTAACCAGTTGAAAAAAACATTAAAAGTTTTTTTATCTTTGTTGCCACAACAACAATTGCCATGTTGGTGCGATAGGCGCGTTTCAAACTCTTCAACTGGTCACCAATTGATGAGATAAATGTTAAAGGATTGTGAGTGTTCCATGGAAGTATTGTACTGGATTCTACGACTGTTCGGGTATGCTCCGTTCCGGCTACAGTTGGATGCAGACACACCTGACCGGGATGCATTCGGAACCTGGCGGACGAAACTATACACCATATCTTTCGGATTGGTATATACACTAGCTTTTATAAAATTCATGTCCGAGCTAAAACACACCGGGTTCTCTGCATCGATGATCGAGGGCAAAGGCGAACGTATGTATTTTACTTTCAATTTTTTCACCACCATGTATGGAGTTGTGAACGG]

[+] EMBL BX605265             [AGAAGAACGTGCGACTTTTGTAGATCTTACCAGAAGCATAGATTGTTGGATGAAAGGCTGATAACTGAGTAGCTTCCAATTGCCGTGCATCACTCCAATCAAAGGGAAGCATTTACGTACTACGTACGTGTTAGCTGATTATCCTGTGTTACAAATCTTTACACGCTGCAAAATTATTTTAGCCATGTCATTGGTCACAGCAGGGCAGGGAATCCGATCGTTGTGATTATTCTCAGTTAACCAGTTGAAAAAAACATTAAAAGTTTTTTTATCTTTGTTGCCACAACAACAATTGCCATGTTGGTGCGATAGGCGCGTTTCAAACTCTTCAACTGGTCACCAATTGATGAGATAAATGTTAAAGGATTGTGAGTGTTCCATGGAAGTATTGTACTGGATTCTACGACTGTTCGGGTATGCTCCGTTCCGGCTACAGTTGGATGCAGACACACCTGACCGGGATGCATTCGGAACCTGGCGGACGAAACTATACACCATATCTTTCGGATTGGTATATACACTAGCTTTTATAAAATTCATGTCCGAGCTAAAACACACCGGGTTCTCTGCATCGATGATCGAGGGCAAAGGCGAACGTATGTATTTTACTTTCAATTTTTTCACCACCATGTATGGAGTTGTGAACGG]


>consensus_2593#1 AGAAGAACGTGCGACTTTTGTAGATCTTACCAGAAGCATAGATTGTTGGATGAAAGGCTG ATAACTGAGTAGCTTCCAATTGCCGTGCATCACTCCAATCAAAGGGAAGCATTTACGTAC TACGTACGTGTTAGCTGATTATCCTGTGTTACAAATCTTTACACGCTGCAAAATTATTTT AGCCATGTCATTGGTCACAGCAGGGCAGGGAATCCGATCGTTGTGATTATTCTCAGTTAA CCAGTTGAAAAAAACATTAAAAGTTTTTTTATCTTTGTTGCCACAACAACAATTGCCATG TTGGTGCGATAGGCGCGTTTCAAACTCTTCAACTGGTCACCAATTGATGAGATAAATGTT AAAGGATTGTGAGTGTTCCATGGAAGTATTGTACTGGATTCTACGACTGTTCGGGTATGC TCCGTTCCGGCTACAGTTGGATGCAGACACACCTGACCGGGATGCATTCGGAACCTGGCG GACGAAACTATACACCATATCTTTCGGATTGGTATATACACTAGCTTTTATAAAATTCAT GTCCGAGCTAAAACACACCGGGTTCTCTGCATCGATGATCGAGGGCAAAGGCGAACGTAT GTATTTTACTTTCAATTTTTTCACCACCATGTATGGAGTTGTGAACGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2593#0      -----------CGACTTTTGTAGATCTTACCAGAAGCATAGATTGTTGGATGAAAGGCTG 49
consensus_2593#1      AGAAGAACGTGCGACTTTTGTAGATCTTACCAGAAGCATAGATTGTTGGATGAAAGGCTG 60
                                 *************************************************

consensus_2593#0      ATAACTGCCCATGTTGGTGCTATCGGCGCGTTTCAAACTCTTCAACTGGT--CACCAATT 107
consensus_2593#1      ATAACTGAGTAGCT---TCCAATTGCCGTGCATCACTCCAATCAAAGGGAAGCATTTACG 117
                      *******   *  *   * * ** * ** *  ***  *   ****  **   **   *  

consensus_2593#0      GATGAGATAAATGTTAAAGGATT-----GTGAGTGGACTGCTAGGGAGCTG------TGT 156
consensus_2593#1      TACTACGTACGTGTTAGCTGATTATCCTGTGTTACAAATCTTTACACGCTGCAAAATTAT 177
                       *  *  **  *****   ****     ***     * *  *     ****      * *

consensus_2593#0      TTCTACAACGTT-----CCGCAAAACGACATG------------TATGATTAATTT---- 195
consensus_2593#1      TTTAGCCATGTCATTGGTCACAGCAGGGCAGGGAATCCGATCGTTGTGATTATTCTCAGT 237
                      **   * * **       * **  * * ** *            * ****** * *    

consensus_2593#0      --ATGAGGCGTGGTAAATTGCGAAAGTCGGCTCCATTCTCGGGTATGATCGGGAGCAGT- 252
consensus_2593#1      TAACCAGTTGAAAAAAACATTAAAAGTTTTTTTATCTTTGTTGCCACAACAACAATTGCC 297
                        *  **  *    ***     *****    *    * *   *    * *   *   *  

consensus_2593#0      -TTCCGGAACGAT----------TAACCTCCTTTGCAGA-CACCCACTGTTG-GATAAA- 298
consensus_2593#1      ATGTTGGTGCGATAGGCGCGTTTCAAACTCTTCAACTGGTCACCAATTGATGAGATAAAT 357
                       *   **  ****           ** *** *   * *  **** * ** ** ****** 

consensus_2593#0      GTT----------------TCCATGGAAGTATTGTACTGGATTCTACGACTGTTCGGGTA 342
consensus_2593#1      GTTAAAGGATTGTGAGTGTTCCATGGAAGTATTGTACTGGATTCTACGACTGTTCGGGTA 417
                      ***                *****************************************

consensus_2593#0      TGCTCCGTTCCGGCTACAGTTGGATGCAGACACACCTGACCGGGATGCATTCGGAACCTG 402
consensus_2593#1      TGCTCCGTTCCGGCTACAGTTGGATGCAGACACACCTGACCGGGATGCATTCGGAACCTG 477
                      ************************************************************

consensus_2593#0      GCGGACGAAACTATACACCATATCTTTCGGATTGGCATATACACTAGCTTTTATAAAATT 462
consensus_2593#1      GCGGACGAAACTATACACCATATCTTTCGGATTGGTATATACACTAGCTTTTATAAAATT 537
                      *********************************** ************************

consensus_2593#0      CATGTCCGAGCTAAAACACACCGGGTTCTCTGCATCGATGATCGAGGGCAAAGGCGAACG 522
consensus_2593#1      CATGTCCGAGCTAAAACACACCGGGTTCTCTGCATCGATGATCGAGGGCAAAGGCGAACG 597
                      ************************************************************

consensus_2593#0      TATGTATTTTACTTTCAATTTTTTCACCACCATGTATGGAGTTGTGAACGGTTATGCTGT 582
consensus_2593#1      TATGTATTTTACTTTCAATTTTTTCACCACCATGTATGGAGTTGTGAACGG--------- 648
                      ***************************************************         

consensus_2593#0      GCGAGACAAAATTGAAAAATGCTCTACAAGCTGCATGCCGTGGATCAAAAGATAAGCCAA 642
consensus_2593#1      ------------------------------------------------------------
                                                                                  

consensus_2593#0      TGGAAACGCAACGTCGATCA 662
consensus_2593#1      --------------------
                                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)