cluster # 273

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Anopheles gambiae
cluster # 273 cluster # 273 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_273#0 length = 754 sequences # 1

consensus_273#1 length = 438 sequences # 1

consensusID : consensus_273#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 754
fasta sequence

                              [GGCAAGAATCGGCACTGAGATCACTGTCGAGTACGGTCGCAGTTCCTGAGACAGGTCTGGCCTGCAGTTTTGAATCACGTTTCATTTGTAGCAATATTACCTTAGTTAACGAAAACGGAAGGAAGGAAAATATATTTACAACCGGGTGTTATACACAGTACCACAACAGGAAGAGATTTTCCGATCGCTGGCCGCTGATAGAGCTGAAACGAACCGTGTTGTGGTGAAGCATGATGGATGCAGTGGTGAATAATTAATCCTTTGCCGGTTGTATATGCCGGCGGGCAAGAGTTGGCGGTCACAGTGAGTGGTTTTCAGTGTTTAGGCGTGATTGTGACAAATTTTCAGCTGTGTAAAAACTATCTCTATTCTGTCACTGGACCAAACCCCGTTTTGAGGCACGCTTGCTGCGACGTGCACTGCAGTGGCATCGAACCGTCAAGACGAGTGTTGAACTAGTGNAACCGCGTACGCAGAGCCACATTGTGGGCATAGAGAGAATGCGGAAGAATCCNTTCGTTACAAGTTGACGATCTGCTTCGGTGTTGCTCGGAGAACGGCCGTAAGATGGTGATGGGCTAGTCAGAATNNGGTCNACCAGGGCTTAGCAAAGAGGGCCAAGTNCGGTTAGCCCGGGGCCANAGGGNGGACAGAATTCAAAGGTTCCCCGGACAGCGGAAGGAAGATTTGGCCTAGACGCANTCNTCACGCCAGGAACGGNTGAGAGTTAGACGGGAATTGGGACCGTATACCC]

[+] EMBL BX468368             [GGCAAGAATCGGCACTGAGATCACTGTCGAGTACGGTCGCAGTTCCTGAGACAGGTCTGGCCTGCAGTTTTGAATCACGTTTCATTTGTAGCAATATTACCTTAGTTAACGAAAACGGAAGGAAGGAAAATATATTTACAACCGGGTGTTATACACAGTACCACAACAGGAAGAGATTTTCCGATCGCTGGCCGCTGATAGAGCTGAAACGAACCGTGTTGTGGTGAAGCATGATGGATGCAGTGGTGAATAATTAATCCTTTGCCGGTTGTATATGCCGGCGGGCAAGAGTTGGCGGTCACAGTGAGTGGTTTTCAGTGTTTAGGCGTGATTGTGACAAATTTTCAGCTGTGTAAAAACTATCTCTATTCTGTCACTGGACCAAACCCCGTTTTGAGGCACGCTTGCTGCGACGTGCACTGCAGTGGCATCGAACCGTCAAGACGAGTGTTGAACTAGTGNAACCGCGTACGCAGAGCCACATTGTGGGCATAGAGAGAATGCGGAAGAATCCNTTCGTTACAAGTTGACGATCTGCTTCGGTGTTGCTCGGAGAACGGCCGTAAGATGGTGATGGGCTAGTCAGAATNNGGTCNACCAGGGCTTAGCAAAGAGGGCCAAGTNCGGTTAGCCCGGGGCCANAGGGNGGACAGAATTCAAAGGTTCCCCGGACAGCGGAAGGAAGATTTGGCCTAGACGCANTCNTCACGCCAGGAACGGNTGAGAGTTAGACGGGAATTGGGACCGTATACCC]




>consensus_273#0
GGCAAGAATCGGCACTGAGATCACTGTCGAGTACGGTCGCAGTTCCTGAGACAGGTCTGG
CCTGCAGTTTTGAATCACGTTTCATTTGTAGCAATATTACCTTAGTTAACGAAAACGGAA
GGAAGGAAAATATATTTACAACCGGGTGTTATACACAGTACCACAACAGGAAGAGATTTT
CCGATCGCTGGCCGCTGATAGAGCTGAAACGAACCGTGTTGTGGTGAAGCATGATGGATG
CAGTGGTGAATAATTAATCCTTTGCCGGTTGTATATGCCGGCGGGCAAGAGTTGGCGGTC
ACAGTGAGTGGTTTTCAGTGTTTAGGCGTGATTGTGACAAATTTTCAGCTGTGTAAAAAC
TATCTCTATTCTGTCACTGGACCAAACCCCGTTTTGAGGCACGCTTGCTGCGACGTGCAC
TGCAGTGGCATCGAACCGTCAAGACGAGTGTTGAACTAGTGNAACCGCGTACGCAGAGCC
ACATTGTGGGCATAGAGAGAATGCGGAAGAATCCNTTCGTTACAAGTTGACGATCTGCTT
CGGTGTTGCTCGGAGAACGGCCGTAAGATGGTGATGGGCTAGTCAGAATNNGGTCNACCA
GGGCTTAGCAAAGAGGGCCAAGTNCGGTTAGCCCGGGGCCANAGGGNGGACAGAATTCAA
AGGTTCCCCGGACAGCGGAAGGAAGATTTGGCCTAGACGCANTCNTCACGCCAGGAACGG
NTGAGAGTTAGACGGGAATTGGGACCGTATACCC

consensusID : consensus_273#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 438
fasta sequence

                              [GCAGAATCGCCACGAGNNTGAAAAGAACGTGTTGTGGTGAAGCATGATGGATGCAGTGGTTTTCAGTGTTTGGCGTGATTGTGACAAATTTTCAGCTGTGTAAAAACTATCTCTATTCTGTCACTGGACCAAACCCCGTTTTGAGCACGCTTGCTGCACGTGCACTGCAGTGGCATCGAGCCGTCAAGACAGTGTTTAATTTTTACCGTGTACGCAGCCCACATTTTGCATAAAAATGCGAAGAATCCTCTTACAGTTGACGATCTGCTTCGTGTTGATCGAAACGCCTAGTGTGTGGTGTAAATTGTCCAGCTACAAAGCCATCGTACCGCCAGCGAAGATCAAGTCCGACGAGAATGCAAAATTTGCAGAAGTGAATTACGATGACTATCCGATGGTAGTACCGAAACGGGCGGCCATGTTACTTGATCGTCTGAT]

[+] EMBL BX467238             [GCAGAATCGCCACGAGNNTGAAAAGAACGTGTTGTGGTGAAGCATGATGGATGCAGTGGTTTTCAGTGTTTGGCGTGATTGTGACAAATTTTCAGCTGTGTAAAAACTATCTCTATTCTGTCACTGGACCAAACCCCGTTTTGAGCACGCTTGCTGCACGTGCACTGCAGTGGCATCGAGCCGTCAAGACAGTGTTTAATTTTTACCGTGTACGCAGCCCACATTTTGCATAAAAATGCGAAGAATCCTCTTACAGTTGACGATCTGCTTCGTGTTGATCGAAACGCCTAGTGTGTGGTGTAAATTGTCCAGCTACAAAGCCATCGTACCGCCAGCGAAGATCAAGTCCGACGAGAATGCAAAATTTGCAGAAGTGAATTACGATGACTATCCGATGGTAGTACCGAAACGGGCGGCCATGTTACTTGATCGTCTGAT]




>consensus_273#1
GCAGAATCGCCACGAGNNTGAAAAGAACGTGTTGTGGTGAAGCATGATGGATGCAGTGGT
TTTCAGTGTTTGGCGTGATTGTGACAAATTTTCAGCTGTGTAAAAACTATCTCTATTCTG
TCACTGGACCAAACCCCGTTTTGAGCACGCTTGCTGCACGTGCACTGCAGTGGCATCGAG
CCGTCAAGACAGTGTTTAATTTTTACCGTGTACGCAGCCCACATTTTGCATAAAAATGCG
AAGAATCCTCTTACAGTTGACGATCTGCTTCGTGTTGATCGAAACGCCTAGTGTGTGGTG
TAAATTGTCCAGCTACAAAGCCATCGTACCGCCAGCGAAGATCAAGTCCGACGAGAATGC
AAAATTTGCAGAAGTGAATTACGATGACTATCCGATGGTAGTACCGAAACGGGCGGCCAT
GTTACTTGATCGTCTGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_273#0      GGCAAGAATCGGCACTGAGATCACTGTCGAGTACGGTCGCAGTTCCTGAGACAGGTCTGG 60
consensus_273#1      ------------------------------------------------------------
                                                                                 

consensus_273#0      CCTGCAGTTTTGAATCACGTTTCATTTGTAGCAATATTACCTTAGTTAACGAAAACGGAA 120
consensus_273#1      ------------------------------------------------------------
                                                                                 

consensus_273#0      GGAAGGAAAATATATTTACAACCGGGTGTTATACACAGTACCACAACAGGAAGAGATTTT 180
consensus_273#1      ------------------------------------------------------------
                                                                                 

consensus_273#0      CCGATCGCTGGCCGCTGATAGAGCTGAAACGAACCGTGTTGTGGTGAAGCATGATGGATG 240
consensus_273#1      ------------------------------------------------------------
                                                                                 

consensus_273#0      CAGTGGTGAATAATTAATCCTTTGCCGGTTGTATATGCCGGCGGGCAAGAGTTGGCGGTC 300
consensus_273#1      ----GCAGAATCGCCACGAGNNTG--AAAAGAACGTGTTG--TGGTGAAGCATGATGGAT 52
                         *  ****    *      **      * *  **  *   **  *    **  **  

consensus_273#0      ACAGTGAGTGGTTTTCAGTGTTTAGGCGTGATTGTGACAAATTTTCAGCTGTGTAAAAAC 360
consensus_273#1      GCAGTG----GTTTTCAGTGTTT-GGCGTGATTGTGACAAATTTTCAGCTGTGTAAAAAC 107
                      *****    ************* ************************************

consensus_273#0      TATCTCTATTCTGTCACTGGACCAAACCCCGTTTTGAGGCACGCTTGCTGCGACGTGCAC 420
consensus_273#1      TATCTCTATTCTGTCACTGGACCAAACCCCGTTTTGAG-CACGCTTGCTGC-ACGTGCAC 165
                     ************************************** ************ ********

consensus_273#0      TGCAGTGGCATCGAACCGTCAAGACGAGTGTTGAACTAGTGNAACCGCGTACGCAGAGCC 480
consensus_273#1      TGCAGTGGCATCGAGCCGTCAAGAC-AGTGTTTAAT---TTTTACCGTGTACGCAGC-CC 220
                     ************** ********** ****** **    *   **** ********  **

consensus_273#0      ACATTGTGGGCATAGAGAGAATGCGGAAGAATCCNTTCGTTACAAGTTGACGATCTGCTT 540
consensus_273#1      ACATTTTG--CATA---AAAATGCG-AAGAATCCTCTTAC----AGTTGACGATCTGCTT 270
                     ***** **  ****   * ****** ********  *       ****************

consensus_273#0      CGGTGTTGCTCGGAGAACGGCCGTAAGATGGTGATGGGCTAGTCAGAATNNGGTCNACCA 600
consensus_273#1      CG-TGTTGATCGAA--ACGCCTAGTGTGTGGTG-TAAATTGTCCAGCTACAAAGCCATCG 326
                     ** ***** *** *  *** *       ***** *    *   ***        * * * 

consensus_273#0      GGGCTTAGCAAAGAGGGCCAAGTNCGGTTAGCCCGGGGCCANAGGGNGGACAGAATTCAA 660
consensus_273#1      TACCGC--CAGCGAAGATCAAGTCCGA------CGAGAATGCAAAATTTGCAGAAGT--G 376
                        *    **  ** *  ***** **       ** *     *       ***** *   

consensus_273#0      AGGTTCCCCGGACAGCGGAAGGAAGATTTGGCCTAGACGCANTCNTCACGCCAGGAACGG 720
consensus_273#1      AATTACGATGACTATCCGATGGTAGTACCGAAACGGGCGGCCATGTTACTTGATCGTCTG 436
                     *  * *   *   * * ** ** **    *     * **      * **   *    * *

consensus_273#0      NTGAGAGTTAGACGGGAATTGGGACCGTATACCC 754
consensus_273#1      AT-------------------------------- 438
                      *