These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2764#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence [CCGTGCTTTTTTTTTAATCCAACTTTTTATTTCTTTTTTTTAGAAAATCAATCATTTGTGGAATATTTAATCACAAATAAAAGAAATATTATCCTCTACTCCAACGAGAGCATGTAAAACGTCTCCCCTTTTTGGAATATTGTGGAAGTACTATTGTAAGCAGTTGATTCCGCTTGATAATGCTTTTTTTCGTCCCCGACTGTAGTTGGCTTCACCGAATTCGGAACGAACCAATGAACCGCGTATAGTAGGCGGCGACAAGATTGATCGAATTGTAAGAAAAAGTATTGCGTTCAATCACAGTAGACGACGGTTTGCATTCGTTTCATTCACACAATTGCTCTCCTCTCCCCCTCTCTCTCTGTCACACAAACACACACACAGAATCTTTCTCTCTTTCAGCTCAGAAACCGTCCAGGGAATGAGAATGTGAAGGTGTAAGGAAATTGGACATGAAGAAATAATGGATTCCACAATTAAGAATAGGCAAACTCGATATAATTTTGTTTCTCGTAAATCCAAAACACCTAGCTCTAGCAAACCTATACAACACAATGTCAGAAGCTGTAGAATTAATGTTTGCAGTAGCTTCTTCTGTTTATAGTAAAGTGTTGATTATTTAAAAAAAACGGAAAAAGTGCAGCCAGGTGAACAAGATGAGTGACGTAAAAGCTAAG] [+] EMBL BM587897 [CCGTGCTTTTTTTTTAATCCAACTTTTTATTTCTTTTTTTTAGAAAATCAATCATTTGTGGAATATTTAATCACAAATAAAAGAAATATTATCCTCTACTCCAACGAGAGCATGTAAAACGTCTCCCCTTTTTGGAATATTGTGGAAGTACTATTGTAAGCAGTTGATTCCGCTTGATAATGCTTTTTTTCGTCCCCGACTGTAGTTGGCTTCACCGAATTCGGAACGAACCAATGAACCGCGTATAGTAGGCGGCGACAAGATTGATCGAATTGTAAGAAAAAGTATTGCGTTCAATCACAGTAGACGACGGTTTGCATTCGTTTCATTCACACAATTGCTCTCCTCTCCCCCTCTCTCTCTGTCACACAAACACACACACAGAATCTTTCTCTCTTTCAGCTCAGAAACCGTCCAGGGAATGAGAATGTGAAGGTGTAAGGAAATTGGACATGAAGAAATAATGGATTCCACAATTAAGAATAGGCAAACTCGATATAATTTTGTTTCTCGTAAATCCAAAACACCTAGCTCTAGCAAACCTATACAACACAATGTCAGAAGCTGTAGAATTAATGTTTGCAGTAGCTTCTTCTGTTTATAGTAAAGTGTTGATTATTTAAAAAAAACGGAAAAAGTGCAGCCAGGTGAACAAGATGAGTGACGTAAAAGCTAAG] consensusID : consensus_2764#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence [ATTGTAAGCAGTTGATTCCGCTTGATAATGCTTTTTTTCGTCCCCGACTGTAGTTGGCTTCACCGAAATTGGTACGAACCAATGAACCGCGTATAGCAGGCGGCGACAAGATTGATCGAATAGTAAGAAAAAGTATTGCATTCAATCACAGTAGACGACGGTTTGCATTCGTTTCATTCACACAATTGCTCTCCTCTCCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCACACAAACACACACAGAATCTTTCTCTCTTTCAGCTCAGAAACCGTCCAGGGAATGAGAATGTGAAGGTGTAAGGAAATTGGAAATGAATAAATAATGAATTCCACAATCAAGAATAGGCAAACTCGATAGCATTTCGTTTCTCCTAAATCCAAAACACCTAGCTCGAGCAAACCTACACAACACAATGTCAGAAG] [+] EMBL BX622604 [ATTGTAAGCAGTTGATTCCGCTTGATAATGCTTTTTTTCGTCCCCGACTGTAGTTGGCTTCACCGAAATTGGTACGAACCAATGAACCGCGTATAGCAGGCGGCGACAAGATTGATCGAATAGTAAGAAAAAGTATTGCATTCAATCACAGTAGACGACGGTTTGCATTCGTTTCATTCACACAATTGCTCTCCTCTCCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCACACAAACACACACAGAATCTTTCTCTCTTTCAGCTCAGAAACCGTCCAGGGAATGAGAATGTGAAGGTGTAAGGAAATTGGAAATGAATAAATAATGAATTCCACAATCAAGAATAGGCAAACTCGATAGCATTTCGTTTCTCCTAAATCCAAAACACCTAGCTCGAGCAAACCTACACAACACAATGTCAGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2764#0 CCGTGCTTTTTTTTTAATCCAACTTTTTATTTCTTTTTTTTAGAAAATCAATCATTTGTG 60 consensus_2764#1 ------------------------------------------------------------ consensus_2764#0 GAATATTTAATCACAAATAAAAGAAATATTATCCTCTACTCCAACGAGAGCATGTAAAAC 120 consensus_2764#1 ------------------------------------------------------------ consensus_2764#0 GTCTCCCCTTTTTGGAATATTGTGGAAGTACTATTGTAAGCAGTTGATTCCGCTTGATAA 180 consensus_2764#1 --------------------------------ATTGTAAGCAGTTGATTCCGCTTGATAA 28 **************************** consensus_2764#0 TGCTTTTTTTCGTCCCCGACTGTAGTTGGCTTCACCGAATTCGGAACGAACCAATGAACC 240 consensus_2764#1 TGCTTTTTTTCGTCCCCGACTGTAGTTGGCTTCACCGAAATTGGTACGAACCAATGAACC 88 *************************************** * ** *************** consensus_2764#0 GCGTATAGTAGGCGGCGACAAGATTGATCGAATTGTAAGAAAAAGTATTGCGTTCAATCA 300 consensus_2764#1 GCGTATAGCAGGCGGCGACAAGATTGATCGAATAGTAAGAAAAAGTATTGCATTCAATCA 148 ******** ************************ ***************** ******** consensus_2764#0 CAGTAGACGACGGTTTGCATTCGTTTCATTCACACAATTGCTCTCCTCTCCCCCTCTCTC 360 consensus_2764#1 CAGTAGACGACGGTTTGCATTCGTTTCATTCACACAATTGCTCTCCTCTCCCCCTCTCTC 208 ************************************************************ consensus_2764#0 TCTGTCAC--------------------------ACAAACACACACACAGAATCTTTCTC 394 consensus_2764#1 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCACACAAACACACACAGAATCTTTCTC 268 *** ** * *** * ******************** consensus_2764#0 TCTTTCAGCTCAGAAACCGTCCAGGGAATGAGAATGTGAAGGTGTAAGGAAATTGGACAT 454 consensus_2764#1 TCTTTCAGCTCAGAAACCGTCCAGGGAATGAGAATGTGAAGGTGTAAGGAAATTGGAAAT 328 ********************************************************* ** consensus_2764#0 GAAGAAATAATGGATTCCACAATTAAGAATAGGCAAACTCGATATAATTTTGTTTCTCGT 514 consensus_2764#1 GAATAAATAATGAATTCCACAATCAAGAATAGGCAAACTCGATAGCATTTCGTTTCTCCT 388 *** ******** ********** ******************** **** ******* * consensus_2764#0 AAATCCAAAACACCTAGCTCTAGCAAACCTATACAACACAATGTCAGAAGCTGTAGAATT 574 consensus_2764#1 AAATCCAAAACACCTAGCTCGAGCAAACCTACACAACACAATGTCAGAAG---------- 438 ******************** ********** ****************** consensus_2764#0 AATGTTTGCAGTAGCTTCTTCTGTTTATAGTAAAGTGTTGATTATTTAAAAAAAACGGAA 634 consensus_2764#1 ------------------------------------------------------------ consensus_2764#0 AAAGTGCAGCCAGGTGAACAAGATGAGTGACGTAAAAGCTAAG 677 consensus_2764#1 ------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||