cluster # 2776

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Anopheles gambiae
cluster # 2776 cluster # 2776 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2776#0 length = 662 sequences # 1

consensus_2776#1 length = 389 sequences # 1

consensusID : consensus_2776#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 662
fasta sequence

                              [CCGCGTAACTGTGCGGACATTCCTCTCTGCTCGCTGGTAGCAGGTTGTGCGGTCTAAATCCTGCCCACCCTCCGCCACCTTTCATGATTGTGTAAAACTGTCAGCAGGTGTGTGTGTGTGTGAGTGCTCGTTGATTGGAAATTTTTGCACCACGTGCAAAAGCAGTGTGAACCGTCCCTTCCGGCAGCGGTGTGAAACGTGGACGTACTGTGGACGACAGCGAACAGCGGCGAGCTAATAGCGACGCCGTGCCCAGGACAACCTGCATCGAAAGCTGTACTACCAACATTCGATGGTAGAGCAATTCGAGCGGAAAACAAACTCGGTTTAATATTTAATCGCATCATATCCCAATCACGACCGACACGGTTTGACTCCAGTCTAGCGTGAAATCCTCACAGCTAACCGTCGACGGTGTCTACGGTGTCTAAAAACTATCCCAAAAGGTGTGAAACGAGTGTCAGAACAGGAAACCGAAGCAGGAAATCAAACCCAAAAAAAAAATACATTCACCTGTCCAGCGCCAAACGGTGGTGCTATTCGTTTTTGGGAGACACAGGTGTGAAACCACCTTCGTGCAGAGACACCATCCTTGCGCTTGGACGCACGTTGTTCTGCCAACGGAACCATGGAAGCGGTAGCGAAACCCTCCTCAACACGCT]

[+] EMBL BM610714             [CCGCGTAACTGTGCGGACATTCCTCTCTGCTCGCTGGTAGCAGGTTGTGCGGTCTAAATCCTGCCCACCCTCCGCCACCTTTCATGATTGTGTAAAACTGTCAGCAGGTGTGTGTGTGTGTGAGTGCTCGTTGATTGGAAATTTTTGCACCACGTGCAAAAGCAGTGTGAACCGTCCCTTCCGGCAGCGGTGTGAAACGTGGACGTACTGTGGACGACAGCGAACAGCGGCGAGCTAATAGCGACGCCGTGCCCAGGACAACCTGCATCGAAAGCTGTACTACCAACATTCGATGGTAGAGCAATTCGAGCGGAAAACAAACTCGGTTTAATATTTAATCGCATCATATCCCAATCACGACCGACACGGTTTGACTCCAGTCTAGCGTGAAATCCTCACAGCTAACCGTCGACGGTGTCTACGGTGTCTAAAAACTATCCCAAAAGGTGTGAAACGAGTGTCAGAACAGGAAACCGAAGCAGGAAATCAAACCCAAAAAAAAAATACATTCACCTGTCCAGCGCCAAACGGTGGTGCTATTCGTTTTTGGGAGACACAGGTGTGAAACCACCTTCGTGCAGAGACACCATCCTTGCGCTTGGACGCACGTTGTTCTGCCAACGGAACCATGGAAGCGGTAGCGAAACCCTCCTCAACACGCT]




>consensus_2776#0
CCGCGTAACTGTGCGGACATTCCTCTCTGCTCGCTGGTAGCAGGTTGTGCGGTCTAAATC
CTGCCCACCCTCCGCCACCTTTCATGATTGTGTAAAACTGTCAGCAGGTGTGTGTGTGTG
TGAGTGCTCGTTGATTGGAAATTTTTGCACCACGTGCAAAAGCAGTGTGAACCGTCCCTT
CCGGCAGCGGTGTGAAACGTGGACGTACTGTGGACGACAGCGAACAGCGGCGAGCTAATA
GCGACGCCGTGCCCAGGACAACCTGCATCGAAAGCTGTACTACCAACATTCGATGGTAGA
GCAATTCGAGCGGAAAACAAACTCGGTTTAATATTTAATCGCATCATATCCCAATCACGA
CCGACACGGTTTGACTCCAGTCTAGCGTGAAATCCTCACAGCTAACCGTCGACGGTGTCT
ACGGTGTCTAAAAACTATCCCAAAAGGTGTGAAACGAGTGTCAGAACAGGAAACCGAAGC
AGGAAATCAAACCCAAAAAAAAAATACATTCACCTGTCCAGCGCCAAACGGTGGTGCTAT
TCGTTTTTGGGAGACACAGGTGTGAAACCACCTTCGTGCAGAGACACCATCCTTGCGCTT
GGACGCACGTTGTTCTGCCAACGGAACCATGGAAGCGGTAGCGAAACCCTCCTCAACACG
CT

consensusID : consensus_2776#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 389
fasta sequence

                              [CGCCCGAGGNNAAAGCTTCATCCGAAGCACAGCACAGCACACCCGAGCCGAGGCCCGAAGATGGATACCACCAGAAAGGTCCTTGCCGACCGCTGTCGTCGTTAGAACGCGTTCGGCATCGTAACTGTGCGGACATTCCTCTCTGCTCGCTGGTAGCAGGTTGTGCGGTCTAAATCCTGCCCACCCTCCGCCACCTTTCAATTAAGAAGCAAAAGAGGTGGCAGTGTTCGTGGTGGAAACTGTTGGAAAGGTGAAACGCAGTGCAACATTGTGTGACTCTATTCCCAGCATAGCGTTTACCGTAAATTGTATCATTTACCCGCAAAGGGAGGGAAGCGGGGATGAAGAAACGAGTGGCCCGTAACAGCTACCCGAAAGAAGCAAACCCC]

[+] EMBL AL932218             [CGCCCGAGGNNAAAGCTTCATCCGAAGCACAGCACAGCACACCCGAGCCGAGGCCCGAAGATGGATACCACCAGAAAGGTCCTTGCCGACCGCTGTCGTCGTTAGAACGCGTTCGGCATCGTAACTGTGCGGACATTCCTCTCTGCTCGCTGGTAGCAGGTTGTGCGGTCTAAATCCTGCCCACCCTCCGCCACCTTTCAATTAAGAAGCAAAAGAGGTGGCAGTGTTCGTGGTGGAAACTGTTGGAAAGGTGAAACGCAGTGCAACATTGTGTGACTCTATTCCCAGCATAGCGTTTACCGTAAATTGTATCATTTACCCGCAAAGGGAGGGAAGCGGGGATGAAGAAACGAGTGGCCCGTAACAGCTACCCGAAAGAAGCAAACCCC]




>consensus_2776#1
CGCCCGAGGNNAAAGCTTCATCCGAAGCACAGCACAGCACACCCGAGCCGAGGCCCGAAG
ATGGATACCACCAGAAAGGTCCTTGCCGACCGCTGTCGTCGTTAGAACGCGTTCGGCATC
GTAACTGTGCGGACATTCCTCTCTGCTCGCTGGTAGCAGGTTGTGCGGTCTAAATCCTGC
CCACCCTCCGCCACCTTTCAATTAAGAAGCAAAAGAGGTGGCAGTGTTCGTGGTGGAAAC
TGTTGGAAAGGTGAAACGCAGTGCAACATTGTGTGACTCTATTCCCAGCATAGCGTTTAC
CGTAAATTGTATCATTTACCCGCAAAGGGAGGGAAGCGGGGATGAAGAAACGAGTGGCCC
GTAACAGCTACCCGAAAGAAGCAAACCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2776#0      CCGCGTAACTGTGCGGACATTCCTCTCTGCTCGCTGGTAGCAGGTTGTGCGGTCTAAATC 60
consensus_2776#1      ------------------------------------------------------------
                                                                                  

consensus_2776#0      CTGCCCACCCTCCGCCACCTTTCATGATTGTGTAAAACTGTCAGCAGGTGTGTGTGTGTG 120
consensus_2776#1      ------------------------------------------------------------
                                                                                  

consensus_2776#0      TGAGTGCTCGTTGATTGGAAATTTTTGCACCACGTGCAAAAGCAGTGTGAACCGTCCCTT 180
consensus_2776#1      ---------------------------------------------------------CGC 3
                                                                               *  

consensus_2776#0      CCGGCAGCGGTGTGAAACGTGGACGTACTGTGGACGACAGCGAACAGCGGCGAGCTAATA 240
consensus_2776#1      CCGAGGNNAAAGCTTCATCCGAA-GCACAGCACAGCACACCCGA-GCCGAGGCCCGAAGA 61
                      ***        *    *   * * * ** *   *  *** *  *   **  *  * ** *

consensus_2776#0      GCGACGCCGTGCCCAGGACAACCTGCATCGAAAGCTGT-ACTACCAACATTCGAT-GGTA 298
consensus_2776#1      TGGATACCA---CCAGAAAGGTCCTTGCCGACCGCTGTCGTCGTTAGAACGCGTTCGGCA 118
                        **  **    **** *    *     ***  *****       *  *  ** * ** *

consensus_2776#0      GAGCAATTCGAGCGGAAAACAAACTCGGTTTAATATTTAATCGCATCATATCCCAATCAC 358
consensus_2776#1      TCGTAACT-GTGCGGACATTCCTCTCTGCTCGCTGGTAGCAGGTTGTGCGGTCTAAATCC 177
                        * ** * * ***** *     *** * *   *  *     *         * **   *

consensus_2776#0      GACCGACACGGTTTGACTCCAGTCTAGCGTGAAATCCTCACAGCTAACCGTCGACGGTGT 418
consensus_2776#1      TGCC--CACCCTCCGCCACCTTTCAATTAAGAAG------CAA--AAGAGGTGGCAGTGT 227
                        **  ***  *  * * **  ** *    ***       **   **  *  * * ****

consensus_2776#0      CTACGGTGTCTAAAAACTATCCCAAAAGGTGTGAAACG-AGTGTCAGAACAGGAAACCGA 477
consensus_2776#1      TCGTGGTG----GAAACTGTTGGAAAG---GTGAAACGCAGTGCAACATTGTGTGACTCT 280
                          ****     ***** *   ***    ******** ****  * *    *  **   

consensus_2776#0      AGCAGGAAATCAAACCCAAAAAAAAAATACATTCACCTGTCCAGCGCCAAACGGTGGTGC 537
consensus_2776#1      ATTCCCAGCATAGCGTTTACCGTAAATTGTAT-CATTTACCCG----CAAAGGGAGG-GA 334
                      *     *    *      *    *** *  ** **  *  **     **** ** ** * 

consensus_2776#0      TATTCGTTTTTGGGAGACACAGGTGTGAAACCACCTTCGTGCAGAGACACCATCCTTGCG 597
consensus_2776#1      AGCGGGGATGAAGAAACGAGTGGCCCGTAACAGCTACCCGAAAGAAGCAAACCCC----- 389
                           *  *   * *   *  **   * ***  *   *    ***  **    **     

consensus_2776#0      CTTGGACGCACGTTGTTCTGCCAACGGAACCATGGAAGCGGTAGCGAAACCCTCCTCAAC 657
consensus_2776#1      ------------------------------------------------------------
                                                                                  

consensus_2776#0      ACGCT 662
consensus_2776#1      -----