cluster # 2810

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Anopheles gambiae
cluster # 2810 cluster # 2810 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2810#0 length = 697 sequences # 1

consensus_2810#1 length = 471 sequences # 1

consensusID : consensus_2810#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 697
fasta sequence

                              [CCGCGGGCGCGATGCTCAGTTACCAAAGCAACGCCCGCGGCTAGTGTCCGGCTGATCTCCTTTCCAACGGCGACGACGTCGAACGTTCTTTCCGTGTTTTGTGTGATTACTCACAACGTGTGCGTGTGTGTGTGTGTGTGTGAAGCATTTTTTAGGCAGCAAACTAGTGTTAGCAAACGTCTCGATCAACCCCCTAGCTAAGCAACAGTGCAGTGTTTGACACGATAGCGGATAACGGACGCGGCACTTAATCGGGTCGGCAGCGCAACAATAAATGCATAACGCCCACCTGCTGCCGTTCAATCGATGCGATCTTGCCAACAAGACGCCCCTGACCTGGCTGGAAGTGTTGGATAAGGGCTAAAGCGCTTCCCTTTTGCCCCGCCGAGCGAGACAGCAAACGATGGCACCGAAGTTCCGTGACGTCGATCAAACGACACCCCTCCTGCATGACTGTAACAACAACAACAACAACAGCAACAGCAACAGCAACATCAACAACGGACGGCTCAGCAATGGCACCGTCGTCACCGGTAGCACCAACAGCAGCGCCACCACCATTGTCCACCTAGCGGCCGGCGGCGACCGGAAGCCAGGGAAACCGGGCGCGCTGCTGCCCGATCCGGTCGCGGGCCGCACGCTCGACCATCCGACCACCAACCTGGACACGCTGATGCACATGCTGAACGGGAACCTC]

[+] EMBL BM593706             [CCGCGGGCGCGATGCTCAGTTACCAAAGCAACGCCCGCGGCTAGTGTCCGGCTGATCTCCTTTCCAACGGCGACGACGTCGAACGTTCTTTCCGTGTTTTGTGTGATTACTCACAACGTGTGCGTGTGTGTGTGTGTGTGTGAAGCATTTTTTAGGCAGCAAACTAGTGTTAGCAAACGTCTCGATCAACCCCCTAGCTAAGCAACAGTGCAGTGTTTGACACGATAGCGGATAACGGACGCGGCACTTAATCGGGTCGGCAGCGCAACAATAAATGCATAACGCCCACCTGCTGCCGTTCAATCGATGCGATCTTGCCAACAAGACGCCCCTGACCTGGCTGGAAGTGTTGGATAAGGGCTAAAGCGCTTCCCTTTTGCCCCGCCGAGCGAGACAGCAAACGATGGCACCGAAGTTCCGTGACGTCGATCAAACGACACCCCTCCTGCATGACTGTAACAACAACAACAACAACAGCAACAGCAACAGCAACATCAACAACGGACGGCTCAGCAATGGCACCGTCGTCACCGGTAGCACCAACAGCAGCGCCACCACCATTGTCCACCTAGCGGCCGGCGGCGACCGGAAGCCAGGGAAACCGGGCGCGCTGCTGCCCGATCCGGTCGCGGGCCGCACGCTCGACCATCCGACCACCAACCTGGACACGCTGATGCACATGCTGAACGGGAACCTC]




>consensus_2810#0
CCGCGGGCGCGATGCTCAGTTACCAAAGCAACGCCCGCGGCTAGTGTCCGGCTGATCTCC
TTTCCAACGGCGACGACGTCGAACGTTCTTTCCGTGTTTTGTGTGATTACTCACAACGTG
TGCGTGTGTGTGTGTGTGTGTGAAGCATTTTTTAGGCAGCAAACTAGTGTTAGCAAACGT
CTCGATCAACCCCCTAGCTAAGCAACAGTGCAGTGTTTGACACGATAGCGGATAACGGAC
GCGGCACTTAATCGGGTCGGCAGCGCAACAATAAATGCATAACGCCCACCTGCTGCCGTT
CAATCGATGCGATCTTGCCAACAAGACGCCCCTGACCTGGCTGGAAGTGTTGGATAAGGG
CTAAAGCGCTTCCCTTTTGCCCCGCCGAGCGAGACAGCAAACGATGGCACCGAAGTTCCG
TGACGTCGATCAAACGACACCCCTCCTGCATGACTGTAACAACAACAACAACAACAGCAA
CAGCAACAGCAACATCAACAACGGACGGCTCAGCAATGGCACCGTCGTCACCGGTAGCAC
CAACAGCAGCGCCACCACCATTGTCCACCTAGCGGCCGGCGGCGACCGGAAGCCAGGGAA
ACCGGGCGCGCTGCTGCCCGATCCGGTCGCGGGCCGCACGCTCGACCATCCGACCACCAA
CCTGGACACGCTGATGCACATGCTGAACGGGAACCTC

consensusID : consensus_2810#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 471
fasta sequence

                              [CCGCGGACGCGTGGGTGTTTGACACGATAGCGGATAACGGACGCGGCACTTAATCGGGTCGGCAGCGCAACAATAAATGCATAACGCCCACCTGCTGCCGTTCAATCGATGCGATCTTGCCAACAAGACGCCCCTGACCTGGCTGGAAGTGTTGGATAAGGGCTAAAGCGCTTCCCTTTTGCCCCGCCGAGCGAGACAGCAAACGATGGCACCGAAGTTCCGTGACGTCGATCAAACGACACCCCTCCTGCATGACTGTAACAACAACAACAACAACAGCAACAGCAACAGCAACATCAACAACGGACGGCTCAGCAATGGCACCGTCGTCACCGGTAGCACCAACAGCAGCGCCACCACCATTGTCCACCTAGCGGCCGGCGGCGACCGGAAGCCAGGGAAACCGGGCGCGCTGCTGCCCGATCCGGTCGCGGGCCGCACGCTCGACCATCCGACCACCAACCTGGACAC]

[+] EMBL BM587822             [CCGCGGACGCGTGGGTGTTTGACACGATAGCGGATAACGGACGCGGCACTTAATCGGGTCGGCAGCGCAACAATAAATGCATAACGCCCACCTGCTGCCGTTCAATCGATGCGATCTTGCCAACAAGACGCCCCTGACCTGGCTGGAAGTGTTGGATAAGGGCTAAAGCGCTTCCCTTTTGCCCCGCCGAGCGAGACAGCAAACGATGGCACCGAAGTTCCGTGACGTCGATCAAACGACACCCCTCCTGCATGACTGTAACAACAACAACAACAACAGCAACAGCAACAGCAACATCAACAACGGACGGCTCAGCAATGGCACCGTCGTCACCGGTAGCACCAACAGCAGCGCCACCACCATTGTCCACCTAGCGGCCGGCGGCGACCGGAAGCCAGGGAAACCGGGCGCGCTGCTGCCCGATCCGGTCGCGGGCCGCACGCTCGACCATCCGACCACCAACCTGGACAC]




>consensus_2810#1
CCGCGGACGCGTGGGTGTTTGACACGATAGCGGATAACGGACGCGGCACTTAATCGGGTC
GGCAGCGCAACAATAAATGCATAACGCCCACCTGCTGCCGTTCAATCGATGCGATCTTGC
CAACAAGACGCCCCTGACCTGGCTGGAAGTGTTGGATAAGGGCTAAAGCGCTTCCCTTTT
GCCCCGCCGAGCGAGACAGCAAACGATGGCACCGAAGTTCCGTGACGTCGATCAAACGAC
ACCCCTCCTGCATGACTGTAACAACAACAACAACAACAGCAACAGCAACAGCAACATCAA
CAACGGACGGCTCAGCAATGGCACCGTCGTCACCGGTAGCACCAACAGCAGCGCCACCAC
CATTGTCCACCTAGCGGCCGGCGGCGACCGGAAGCCAGGGAAACCGGGCGCGCTGCTGCC
CGATCCGGTCGCGGGCCGCACGCTCGACCATCCGACCACCAACCTGGACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2810#0      CCGCGGGCGCGATGCTCAGTTACCAAAGCAACGCCCGCGGCTAGTGTCCGGCTGATCTCC 60
consensus_2810#1      ------------------------------------------------------------
                                                                                  

consensus_2810#0      TTTCCAACGGCGACGACGTCGAACGTTCTTTCCGTGTTTTGTGTGATTACTCACAACGTG 120
consensus_2810#1      ------------------------------------------------------------
                                                                                  

consensus_2810#0      TGCGTGTGTGTGTGTGTGTGTGAAGCATTTTTTAGGCAGCAAACTAGTGTTAGCAAACGT 180
consensus_2810#1      ------------------------------------------------------------
                                                                                  

consensus_2810#0      CTCGATCAACCCCCTAGCTAAGCAACAGTGCAGTGTTTGACACGATAGCGGATAACGGAC 240
consensus_2810#1      -----------------CCGCGGACGCGTG-GGTGTTTGACACGATAGCGGATAACGGAC 42
                                       *   * *   ***  ****************************

consensus_2810#0      GCGGCACTTAATCGGGTCGGCAGCGCAACAATAAATGCATAACGCCCACCTGCTGCCGTT 300
consensus_2810#1      GCGGCACTTAATCGGGTCGGCAGCGCAACAATAAATGCATAACGCCCACCTGCTGCCGTT 102
                      ************************************************************

consensus_2810#0      CAATCGATGCGATCTTGCCAACAAGACGCCCCTGACCTGGCTGGAAGTGTTGGATAAGGG 360
consensus_2810#1      CAATCGATGCGATCTTGCCAACAAGACGCCCCTGACCTGGCTGGAAGTGTTGGATAAGGG 162
                      ************************************************************

consensus_2810#0      CTAAAGCGCTTCCCTTTTGCCCCGCCGAGCGAGACAGCAAACGATGGCACCGAAGTTCCG 420
consensus_2810#1      CTAAAGCGCTTCCCTTTTGCCCCGCCGAGCGAGACAGCAAACGATGGCACCGAAGTTCCG 222
                      ************************************************************

consensus_2810#0      TGACGTCGATCAAACGACACCCCTCCTGCATGACTGTAACAACAACAACAACAACAGCAA 480
consensus_2810#1      TGACGTCGATCAAACGACACCCCTCCTGCATGACTGTAACAACAACAACAACAACAGCAA 282
                      ************************************************************

consensus_2810#0      CAGCAACAGCAACATCAACAACGGACGGCTCAGCAATGGCACCGTCGTCACCGGTAGCAC 540
consensus_2810#1      CAGCAACAGCAACATCAACAACGGACGGCTCAGCAATGGCACCGTCGTCACCGGTAGCAC 342
                      ************************************************************

consensus_2810#0      CAACAGCAGCGCCACCACCATTGTCCACCTAGCGGCCGGCGGCGACCGGAAGCCAGGGAA 600
consensus_2810#1      CAACAGCAGCGCCACCACCATTGTCCACCTAGCGGCCGGCGGCGACCGGAAGCCAGGGAA 402
                      ************************************************************

consensus_2810#0      ACCGGGCGCGCTGCTGCCCGATCCGGTCGCGGGCCGCACGCTCGACCATCCGACCACCAA 660
consensus_2810#1      ACCGGGCGCGCTGCTGCCCGATCCGGTCGCGGGCCGCACGCTCGACCATCCGACCACCAA 462
                      ************************************************************

consensus_2810#0      CCTGGACACGCTGATGCACATGCTGAACGGGAACCTC 697
consensus_2810#1      CCTGGACAC---------------------------- 471
                      *********