These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2837#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence [CTTGTGATTTTCCGCGATTTTGATCAATTTCACACAAAAATGCAGGACGATATGGACGGTACCCATTCGGAAGACTCCAGCTGCGAGCAGCTGCTAAAGGCAGGAACGCCACTACGGGAGCAGGACCGGTTCCTCCCGATTGCCAACATAACGAAAATAATGAAAAAGTCCGTACCGAATAATGGCAAAATTGCGAAAGAAGCGCGTGAATGCATTCAGGAGTGCGTGTCCGAGTTTATCTCCTTCATCACATCCGAGGCGAGCGATCGGTGCCACATGGAGAAGCGCAAAACCATCAACGGAGAGGACATTCTGTGTGCCATGTATGCGCTAGGTTTCGACAACTACATCGAACCGCTCAAGCTCTACCTGAGCAAGTACAAGGAAAACATAATGTCGGAGCGTCAAGCATCGGAGGAGCGCGGTGAGCCAGTGCAGACGGGAGAATCGAGCCGGCAGGGTAATGTTATTGGCAATGCCGAGATCATTTACCAGTCGGAGGACGGCACGCTGTACTTCAAGAACGAACCGTACGAGCAGATGTGATGTTAATGTTAGCTTGTCGATTGGCTACGTATTTTATTAAGCTATATTAAGGTGTTTCTTAATTTTCAATAAATGATCTTCATTAGTGCGCT] [+] EMBL BX628260 [CTTGTGATTTTCCGCGATTTTGATCAATTTCACACAAAAATGCAGGACGATATGGACGGTACCCATTCGGAAGACTCCAGCTGCGAGCAGCTGCTAAAGGCAGGAACGCCACTACGGGAGCAGGACCGGTTCCTCCCGATTGCCAACATAACGAAAATAATGAAAAAGTCCGTACCGAATAATGGCAAAATTGCGAAAGAAGCGCGTGAATGCATTCAGGAGTGCGTGTCCGAGTTTATCTCCTTCATCACATCCGAGGCGAGCGATCGGTGCCACATGGAGAAGCGCAAAACCATCAACGGAGAGGACATTCTGTGTGCCATGTATGCGCTAGGTTTCGACAACTACATCGAACCGCTCAAGCTCTACCTGAGCAAGTACAAGGAAAACATAATGTCGGAGCGTCAAGCATCGGAGGAGCGCGGTGAGCCAGTGCAGACGGGAGAATCGAGCCGGCAGGGTAATGTTATTGGCAATGCCGAGATCATTTACCAGTCGGAGGACGGCACGCTGTACTTCAAGAACGAACCGTACGAGCAGATGTGATGTTAATGTTAGCTTGTCGATTGGCTACGTATTTTATTAAGCTATATTAAGGTGTTTCTTAATTTTCAATAAATGATCTTCATTAGTGCGCT] consensusID : consensus_2837#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [GAGCAGCTGCTAAAGGCAGGAACGCCACTACGGGAGCAAGACCGGTTCCTCCCGATTGCCAACATAACGAAAATAATGAAAAAGTCCGTACCGAATAATGGCAAAATTGCGAAAGAAGCGCGTGAATGCATTCAGGAGTGCGTGTCCGAGTTTATCTCCTTCATCACATCCGAGGCGAGCGATCGGTGCCACATGGAGAAGCGCAAAACCATCAACGGAGAGGACATTCTGTGTGCCATGTATGCGCTAGGTTTCGACAACTACATCGAACCGCTCAAGCTCTACCTGAGCAAGTACAAGGAACAGAACATAATGTCGGAGCGTCAAGCATCGGAGGAGCGCGGTGAGCCAGTGCAGACGGGAGAATCGAGCCGGCAGGGAAATGATTCTGTAACCGCTCAAGTCCTTCCCACAGTTATTGGCAATGCCGAGATCATTTACCAGTCGGAGGACGGCACGCTGTACTTCAAGAACGAACCGTACGAGCAGATGTGATGTTAATGTTAGCTTGTCGATTAGCTACGTATTTTATTAAGCTATATTAAGGTGTTTCTTAATTTTCAATAAATGATCTTCATTAGTGCGC] [+] EMBL BX609263 [GAGCAGCTGCTAAAGGCAGGAACGCCACTACGGGAGCAAGACCGGTTCCTCCCGATTGCCAACATAACGAAAATAATGAAAAAGTCCGTACCGAATAATGGCAAAATTGCGAAAGAAGCGCGTGAATGCATTCAGGAGTGCGTGTCCGAGTTTATCTCCTTCATCACATCCGAGGCGAGCGATCGGTGCCACATGGAGAAGCGCAAAACCATCAACGGAGAGGACATTCTGTGTGCCATGTATGCGCTAGGTTTCGACAACTACATCGAACCGCTCAAGCTCTACCTGAGCAAGTACAAGGAACAGAACATAATGTCGGAGCGTCAAGCATCGGAGGAGCGCGGTGAGCCAGTGCAGACGGGAGAATCGAGCCGGCAGGGAAATGATTCTGTAACCGCTCAAGTCCTTCCCACAGTTATTGGCAATGCCGAGATCATTTACCAGTCGGAGGACGGCACGCTGTACTTCAAGAACGAACCGTACGAGCAGATGTGATGTTAATGTTAGCTTGTCGATTAGCTACGTATTTTATTAAGCTATATTAAGGTGTTTCTTAATTTTCAATAAATGATCTTCATTAGTGCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2837#0 CTTGTGATTTTCCGCGATTTTGATCAATTTCACACAAAAATGCAGGACGATATGGACGGT 60 consensus_2837#1 ------------------------------------------------------------ consensus_2837#0 ACCCATTCGGAAGACTCCAGCTGCGAGCAGCTGCTAAAGGCAGGAACGCCACTACGGGAG 120 consensus_2837#1 ------------------------GAGCAGCTGCTAAAGGCAGGAACGCCACTACGGGAG 36 ************************************ consensus_2837#0 CAGGACCGGTTCCTCCCGATTGCCAACATAACGAAAATAATGAAAAAGTCCGTACCGAAT 180 consensus_2837#1 CAAGACCGGTTCCTCCCGATTGCCAACATAACGAAAATAATGAAAAAGTCCGTACCGAAT 96 ** ********************************************************* consensus_2837#0 AATGGCAAAATTGCGAAAGAAGCGCGTGAATGCATTCAGGAGTGCGTGTCCGAGTTTATC 240 consensus_2837#1 AATGGCAAAATTGCGAAAGAAGCGCGTGAATGCATTCAGGAGTGCGTGTCCGAGTTTATC 156 ************************************************************ consensus_2837#0 TCCTTCATCACATCCGAGGCGAGCGATCGGTGCCACATGGAGAAGCGCAAAACCATCAAC 300 consensus_2837#1 TCCTTCATCACATCCGAGGCGAGCGATCGGTGCCACATGGAGAAGCGCAAAACCATCAAC 216 ************************************************************ consensus_2837#0 GGAGAGGACATTCTGTGTGCCATGTATGCGCTAGGTTTCGACAACTACATCGAACCGCTC 360 consensus_2837#1 GGAGAGGACATTCTGTGTGCCATGTATGCGCTAGGTTTCGACAACTACATCGAACCGCTC 276 ************************************************************ consensus_2837#0 AAGCTCTACCTGAGCAAGTACAAGGAA---AACATAATGTCGGAGCGTCAAGCATCGGAG 417 consensus_2837#1 AAGCTCTACCTGAGCAAGTACAAGGAACAGAACATAATGTCGGAGCGTCAAGCATCGGAG 336 *************************** ****************************** consensus_2837#0 GAGCGCGGTGAGCCAGTGCAGACGGGAGAATCGAGCCGGCAGGGTAATG----------- 466 consensus_2837#1 GAGCGCGGTGAGCCAGTGCAGACGGGAGAATCGAGCCGGCAGGGAAATGATTCTGTAACC 396 ******************************************** **** consensus_2837#0 -------------------TTATTGGCAATGCCGAGATCATTTACCAGTCGGAGGACGGC 507 consensus_2837#1 GCTCAAGTCCTTCCCACAGTTATTGGCAATGCCGAGATCATTTACCAGTCGGAGGACGGC 456 ***************************************** consensus_2837#0 ACGCTGTACTTCAAGAACGAACCGTACGAGCAGATGTGATGTTAATGTTAGCTTGTCGAT 567 consensus_2837#1 ACGCTGTACTTCAAGAACGAACCGTACGAGCAGATGTGATGTTAATGTTAGCTTGTCGAT 516 ************************************************************ consensus_2837#0 TGGCTACGTATTTTATTAAGCTATATTAAGGTGTTTCTTAATTTTCAATAAATGATCTTC 627 consensus_2837#1 TAGCTACGTATTTTATTAAGCTATATTAAGGTGTTTCTTAATTTTCAATAAATGATCTTC 576 * ********************************************************** consensus_2837#0 ATTAGTGCGCT 638 consensus_2837#1 ATTAGTGCGC- 586 ********** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||