These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2847#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence [CCGCGGACGCGTGGGTTCTTACGTTACGCGTAAAAAGTCTCTGCACGTGTTTGCAGCATGTAGATATGATAATTTGATTTTACTTTAAAGCACGGTATACCCGCTTTAACGATCGCTTCCCATACCAACTCCATGGTACTGTGTTGTCAGATACAAAAGGAATATGTACTTGTGTTTTGCACGGGAAAGAAAACAGACCGATAAATAAGAATAAATGTTATTACAATGTAGTGAATGATTTATAAAAGGTGGGAGAAACGAAAATTGAAAGAGGAAAAGCCTCTGGATTGTTCGTATATTCATGACTGTGTCATTTGCCAATGTGAAATAAATAGTTTCTGTAAACAGGTGGAAGCAAATTTGTACAAGGGAAGCATTAACCTTGCAATTTCCCGCTAAGATTAAACCAAAAACAAAACCAGAGTATAGCTACACTTAAAGAAAAATACAATCCATATAAAATCACTCGAAAAAAGCCGTCGTAATGTTAAGCCGTTCGTGGATAGGATCAACGCAACCTACGAGCCAATGTAATGAAAGAAAATTTAATGAAACAATTTCGCAAAGCGTTCGGCTATACTGTGTGAAAGTCAGTTGCGTTATTATTAAAACTATAGAATCAAAACAAAACACAATAGTACGCAACCA] [+] EMBL BM653791 [CCGCGGACGCGTGGGTTCTTACGTTACGCGTAAAAAGTCTCTGCACGTGTTTGCAGCATGTAGATATGATAATTTGATTTTACTTTAAAGCACGGTATACCCGCTTTAACGATCGCTTCCCATACCAACTCCATGGTACTGTGTTGTCAGATACAAAAGGAATATGTACTTGTGTTTTGCACGGGAAAGAAAACAGACCGATAAATAAGAATAAATGTTATTACAATGTAGTGAATGATTTATAAAAGGTGGGAGAAACGAAAATTGAAAGAGGAAAAGCCTCTGGATTGTTCGTATATTCATGACTGTGTCATTTGCCAATGTGAAATAAATAGTTTCTGTAAACAGGTGGAAGCAAATTTGTACAAGGGAAGCATTAACCTTGCAATTTCCCGCTAAGATTAAACCAAAAACAAAACCAGAGTATAGCTACACTTAAAGAAAAATACAATCCATATAAAATCACTCGAAAAAAGCCGTCGTAATGTTAAGCCGTTCGTGGATAGGATCAACGCAACCTACGAGCCAATGTAATGAAAGAAAATTTAATGAAACAATTTCGCAAAGCGTTCGGCTATACTGTGTGAAAGTCAGTTGCGTTATTATTAAAACTATAGAATCAAAACAAAACACAATAGTACGCAACCA] consensusID : consensus_2847#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 489 fasta sequence [GAATCCCCGAGGTTATCTGCACGTGTTTGCAGCATGCTAGATATGATAATTTGATGTTACTTTAAAGCACGGTATACCCGCTTTAACGATCGCTTCCCATACCAACTCCATGGTACTGTGTTGTCAGATACAAAAGGAATATGTACTTGTGTTTTGCACGGCAACACGAAAACAGACCGACTAAAATAACGAAATAAACTGCTTACTTACAACTGGTACGCTGCACACTGGGTTTACTAAACAGGGTGGGAGAACACCGAAAACTTGANAACGAGGANAAAGCCTCTGGACTTGGTTCCGCTATATTCATGACTGTGTCATTTGCCAATGTGAAATAAACGGTTCTGTAAACAGGTGGAAGCAAATTTGTACAAGGGAAGCATTAACCTTGCAATTTCCCGCTAAGATAAAACCAAAAACAAAACCAGAGTATAGCTACACTTAAAGAAAAATACAATCCATATAAAATCACTCGAAAAAAGCCGTCGT] [+] EMBL AL933378 [GAATCCCCGAGGTTATCTGCACGTGTTTGCAGCATGCTAGATATGATAATTTGATGTTACTTTAAAGCACGGTATACCCGCTTTAACGATCGCTTCCCATACCAACTCCATGGTACTGTGTTGTCAGATACAAAAGGAATATGTACTTGTGTTTTGCACGGCAACACGAAAACAGACCGACTAAAATAACGAAATAAACTGCTTACTTACAACTGGTACGCTGCACACTGGGTTTACTAAACAGGGTGGGAGAACACCGAAAACTTGANAACGAGGANAAAGCCTCTGGACTTGGTTCCGCTATATTCATGACTGTGTCATTTGCCAATGTGAAATAAACGGTTCTGTAAACAGGTGGAAGCAAATTTGTACAAGGGAAGCATTAACCTTGCAATTTCCCGCTAAGATAAAACCAAAAACAAAACCAGAGTATAGCTACACTTAAAGAAAAATACAATCCATATAAAATCACTCGAAAAAAGCCGTCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2847#0 CCGCGGACGCGTGGGTTCTTACGTTACGCGTAAAAAGTCTCTGCACGTGTTTGCAGCATG 60 consensus_2847#1 ------------------------GAATCCCCGAGGTTATCTGCACGTGTTTGCAGCATG 36 * * * * ********************* consensus_2847#0 -TAGATATGATAATTTGATTTTACTTTAAAGCACGGTATACCCGCTTTAACGATCGCTTC 119 consensus_2847#1 CTAGATATGATAATTTGATGTTACTTTAAAGCACGGTATACCCGCTTTAACGATCGCTTC 96 ****************** **************************************** consensus_2847#0 CCATACCAACTCCATGGTACTGTGTTGTCAGATACAAAAGGAATATGTACTTGTGTTTTG 179 consensus_2847#1 CCATACCAACTCCATGGTACTGTGTTGTCAGATACAAAAGGAATATGTACTTGTGTTTTG 156 ************************************************************ consensus_2847#0 CACGGGAAA--GAAAACAGACCGAT--AAATAA--GAATAAATG--TTA-TTACAA---- 226 consensus_2847#1 CACGGCAACACGAAAACAGACCGACTAAAATAACGAAATAAACTGCTTACTTACAACTGG 216 ***** ** ************* ****** ****** *** ****** consensus_2847#0 TGTAGTGAAT----GATTTATAAAA---GGTGGGAGAAA--CGAAAATTGAAAGA----G 273 consensus_2847#1 TACGCTGCACACTGGGTTTACTAAACAGGGTGGGAGAACACCGAAAACTTGANAACGAGG 276 * ** * * **** *** ********** ****** * * * * consensus_2847#0 GAAAAGCCTCTGGATT--GTTCG--TATATTCATGACTGTGTCATTTGCCAATGTGAAAT 329 consensus_2847#1 ANAAAGCCTCTGGACTTGGTTCCGCTATATTCATGACTGTGTCATTTGCCAATGTGAAAT 336 ************ * **** *********************************** consensus_2847#0 AAATAGTTTCTGTAAACAGGTGGAAGCAAATTTGTACAAGGGAAGCATTAACCTTGCAAT 389 consensus_2847#1 AAACGGTT-CTGTAAACAGGTGGAAGCAAATTTGTACAAGGGAAGCATTAACCTTGCAAT 395 *** *** *************************************************** consensus_2847#0 TTCCCGCTAAGATTAAACCAAAAACAAAACCAGAGTATAGCTACACTTAAAGAAAAATAC 449 consensus_2847#1 TTCCCGCTAAGATAAAACCAAAAACAAAACCAGAGTATAGCTACACTTAAAGAAAAATAC 455 ************* ********************************************** consensus_2847#0 AATCCATATAAAATCACTCGAAAAAAGCCGTCGTAATGTTAAGCCGTTCGTGGATAGGAT 509 consensus_2847#1 AATCCATATAAAATCACTCGAAAAAAGCCGTCGT-------------------------- 489 ********************************** consensus_2847#0 CAACGCAACCTACGAGCCAATGTAATGAAAGAAAATTTAATGAAACAATTTCGCAAAGCG 569 consensus_2847#1 ------------------------------------------------------------ consensus_2847#0 TTCGGCTATACTGTGTGAAAGTCAGTTGCGTTATTATTAAAACTATAGAATCAAAACAAA 629 consensus_2847#1 ------------------------------------------------------------ consensus_2847#0 ACACAATAGTACGCAACCA 648 consensus_2847#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||