These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2900#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence [CTTCAACTTAATCTCAAGCGTGTAGCCAGCGCCGTATAGATTTTTCAGGTGTTGCGTCGACCCGAGACATCTGGAAATATAAACAAAGCGTCATGCATACCTCGCCTCACGCGCAAACAGTAGGTCGCATTTCAAACCTACCTTAGCTCTCCTTTGACCATGATTCCTACGCGCGAACATAGAGCGTCAGCTCTTCCATCGAATGTGTCGTCAGCATCGCGCAACGTTTTCCGTGGAAGCTGGCAAGGATAGTGTCCCACAGGAATCTTTTCGATTTCGGATCCATCCCAGTTGACGGTTCATCGAGTAGAACTACTTTGGGAGCACCGACCATTGCCATAGCATAGCTAAGTTTACGCCTAGTACCGCCGGAACAGTGTTGGGTTTGCTTATTGGCATGCTCGTTTATGTGCAATCCCGTGAGATACGTCGATATCAATCTGTTCAAATCTTTGCCACGCACGCCCCGGATGCGGGCATACAATTCTAGATGTTCGCGAACAGTAACGTTCTTCCACAGAGCGTCGTGTTGGGGACAATAGCCCAATGTCTTGAATGCGTCGTCTTGATTGATAGTGATACTGTGACCTGCAACACGCACCGTGCCACGCGTTGGAGCCGTTTCTCCTGTCATGATTTTCATGGTGGTCGTTTTGCCGGCACCATTGTGTCCGAGCAAAACCAGTACCTCCCCAGC] [+] EMBL BX610392 [CTTCAACTTAATCTCAAGCGTGTAGCCAGCGCCGTATAGATTTTTCAGGTGTTGCGTCGACCCGAGACATCTGGAAATATAAACAAAGCGTCATGCATACCTCGCCTCACGCGCAAACAGTAGGTCGCATTTCAAACCTACCTTAGCTCTCCTTTGACCATGATTCCTACGCGCGAACATAGAGCGTCAGCTCTTCCATCGAATGTGTCGTCAGCATCGCGCAACGTTTTCCGTGGAAGCTGGCAAGGATAGTGTCCCACAGGAATCTTTTCGATTTCGGATCCATCCCAGTTGACGGTTCATCGAGTAGAACTACTTTGGGAGCACCGACCATTGCCATAGCATAGCTAAGTTTACGCCTAGTACCGCCGGAACAGTGTTGGGTTTGCTTATTGGCATGCTCGTTTATGTGCAATCCCGTGAGATACGTCGATATCAATCTGTTCAAATCTTTGCCACGCACGCCCCGGATGCGGGCATACAATTCTAGATGTTCGCGAACAGTAACGTTCTTCCACAGAGCGTCGTGTTGGGGACAATAGCCCAATGTCTTGAATGCGTCGTCTTGATTGATAGTGATACTGTGACCTGCAACACGCACCGTGCCACGCGTTGGAGCCGTTTCTCCTGTCATGATTTTCATGGTGGTCGTTTTGCCGGCACCATTGTGTCCGAGCAAAACCAGTACCTCCCCAGC] consensusID : consensus_2900#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [CAACGCCATCGAATCGATTGTCAATGCAGTTGCTGATAACCGGTGCAATGTGGTCCGTACTTTGGTCGAGCTGCAGCTGCTCCTGGCTGCTGCTCGGTTGGCTTTCGATTGGTGTCTCACTGTACACATTTTCTATGTGCTTCAACTTAATCTCAAGCGTGTAGCCAGCGCCGTATAGATTTTTCAGGTGTTGCGTCGACCCGAGACATCTTAGCTCTCCTTTGACCATGATTCCTACGCGCGAACATAGAGCGTCAGCTTCTTCCATCGAATGTGTCGTCAGCATCGCGCAACGTTTTCCGTGGAAGCTGGCAAGGATAGTGTCCCACAGGAATCTTTTCGATTTCGGATCCATCCCAGTTGACGGTTCATCGAGTAGAACTACTTTGGGAGCACCGACCATTGCCATAGCATAGCTAAGTTTACGCCTAGTACCGCCGGAACAGTGTTGGGTTTGCTTATTGGCATGCTCGTTTATGTGCAATCCCGTGAGATACGTCGATATCAATCTGTTCAAATCTTTGCCACGCACGCCCCGGATGCGGGCATACAATTCTAGATGTTCGCGAACAGTAACGTTCTTCCACAGAGCGTCGTGTTGGGGACCGGACGCGTGGGCGG] [-] EMBL BM640396 [CAACGCCATCGAATCGATTGTCAATGCAGTTGCTGATAACCGGTGCAATGTGGTCCGTACTTTGGTCGAGCTGCAGCTGCTCCTGGCTGCTGCTCGGTTGGCTTTCGATTGGTGTCTCACTGTACACATTTTCTATGTGCTTCAACTTAATCTCAAGCGTGTAGCCAGCGCCGTATAGATTTTTCAGGTGTTGCGTCGACCCGAGACATCTTAGCTCTCCTTTGACCATGATTCCTACGCGCGAACATAGAGCGTCAGCTTCTTCCATCGAATGTGTCGTCAGCATCGCGCAACGTTTTCCGTGGAAGCTGGCAAGGATAGTGTCCCACAGGAATCTTTTCGATTTCGGATCCATCCCAGTTGACGGTTCATCGAGTAGAACTACTTTGGGAGCACCGACCATTGCCATAGCATAGCTAAGTTTACGCCTAGTACCGCCGGAACAGTGTTGGGTTTGCTTATTGGCATGCTCGTTTATGTGCAATCCCGTGAGATACGTCGATATCAATCTGTTCAAATCTTTGCCACGCACGCCCCGGATGCGGGCATACAATTCTAGATGTTCGCGAACAGTAACGTTCTTCCACAGAGCGTCGTGTTGGGGACCGGACGCGTGGGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2900#0 -----------------------------------------------------------C 1 consensus_2900#1 CAACGCCATCGAATCGATTGTCAATGCAGTTGCTGATAACCGGTGCAATGTGGTCCGTAC 60 * consensus_2900#0 TTCAACTTAATCTCAA--GCGTGTAGCCAGCGCCGTATAGATTTTTCA--GGTGTTGCGT 57 consensus_2900#1 TTTGGTCGAGCTGCAGCTGCTCCTGGCTGCTGCTCGGTTGGCTTTCGATTGGTGTCTCAC 120 ** * ** ** * ** ** * * *** * ***** * consensus_2900#0 CGACCCGAGACATCTGGAAATATAAACAAAGCGTCATGCATAC--CTCGCCTCACGCGCA 115 consensus_2900#1 TG-TACACATTTTCTATGTGCTTCAACTTAATCTCAAGCGTGTAGCCAGCGCCGTATAGA 179 * * *** * *** * *** ** * * ** * * consensus_2900#0 AACAGTAGGTCGCATTTCAAACC----TACCTTAGCTCTCCTTTGACCATGATTCCTACG 171 consensus_2900#1 TTTTTCAGGTGTTGCGTCGACCCGAGACATCTTAGCTCTCCTTTGACCATGATTCCTACG 239 **** ** * ** * ****************************** consensus_2900#0 CGCGAACATAGAGCGTCAGCT-CTTCCATCGAATGTGTCGTCAGCATCGCGCAACGTTTT 230 consensus_2900#1 CGCGAACATAGAGCGTCAGCTTCTTCCATCGAATGTGTCGTCAGCATCGCGCAACGTTTT 299 ********************* ************************************** consensus_2900#0 CCGTGGAAGCTGGCAAGGATAGTGTCCCACAGGAATCTTTTCGATTTCGGATCCATCCCA 290 consensus_2900#1 CCGTGGAAGCTGGCAAGGATAGTGTCCCACAGGAATCTTTTCGATTTCGGATCCATCCCA 359 ************************************************************ consensus_2900#0 GTTGACGGTTCATCGAGTAGAACTACTTTGGGAGCACCGACCATTGCCATAGCATAGCTA 350 consensus_2900#1 GTTGACGGTTCATCGAGTAGAACTACTTTGGGAGCACCGACCATTGCCATAGCATAGCTA 419 ************************************************************ consensus_2900#0 AGTTTACGCCTAGTACCGCCGGAACAGTGTTGGGTTTGCTTATTGGCATGCTCGTTTATG 410 consensus_2900#1 AGTTTACGCCTAGTACCGCCGGAACAGTGTTGGGTTTGCTTATTGGCATGCTCGTTTATG 479 ************************************************************ consensus_2900#0 TGCAATCCCGTGAGATACGTCGATATCAATCTGTTCAAATCTTTGCCACGCACGCCCCGG 470 consensus_2900#1 TGCAATCCCGTGAGATACGTCGATATCAATCTGTTCAAATCTTTGCCACGCACGCCCCGG 539 ************************************************************ consensus_2900#0 ATGCGGGCATACAATTCTAGATGTTCGCGAACAGTAACGTTCTTCCACAGAGCGTCGTGT 530 consensus_2900#1 ATGCGGGCATACAATTCTAGATGTTCGCGAACAGTAACGTTCTTCCACAGAGCGTCGTGT 599 ************************************************************ consensus_2900#0 TGGGGACAATAGCCCAATGTCTTGAATGCGTCGTCTTGATTGATAGTGATACTGTGACCT 590 consensus_2900#1 TGGGGAC--CGGACGCGTGGGCGG------------------------------------ 621 ******* * * ** * consensus_2900#0 GCAACACGCACCGTGCCACGCGTTGGAGCCGTTTCTCCTGTCATGATTTTCATGGTGGTC 650 consensus_2900#1 ------------------------------------------------------------ consensus_2900#0 GTTTTGCCGGCACCATTGTGTCCGAGCAAAACCAGTACCTCCCCAGC 697 consensus_2900#1 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||