These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2926#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 698 fasta sequence [CCGCGGACGCGTGGGTGGCGATCGGCGGAGGAAAGTTTAAAAAGAAAAGCGACAAAAAGCGCTACTTTGAGCAGCAGGCGGACGAATCAGCAACGCCAGAACCACAGCCGAGTGAAGTGCAAGGCCGTCCGGCCAAAATCGTATTCGACGACGAAGGTGAGCAACGCGTGGTGCCGATTGATTACACGGCTGGCGAAACCGGCACATCGTCGCGTGCTACCGGTGCGAGGCGCAAGAAGGCACATGCGGACGGTGAAGATGATGACCACGAGGGTGACGAGGATGAGGAGGAGGACCAGCTGACCAAGCTGTGGTACAACAACTTCGAACCATACAATCTGGTCGGCGAGATGGTGGACATGAAGGACGCGGAATTGGCGGAACTGCGCAACATCTGCAAGGTGGCATTCGAGGCCGAGTGCCGGGCCCGCAAGCGGTACGATCCGTCCGATGCAAAGTGGCTGCTGAGCGCGCTGGAAAAGGGTACGCTGCGCGACAGGGCCAACGCGGGGGCGCTGCTGGTGCAGACGAACCCGTTCTGCCATCTGCACGCGCTCGACACGCTGGTGGGCATGGTGAAACCGTCCAACAAGGGCTTCCTGGACGTGGTCGAGGTGCTGACCGAGCTGATGCTGAAATCGCTGATGCCCACCCATCGCAAGCTGATCACGCTGCCGATGCGCGGCACGGACTGGAAG] [+] EMBL BM584151 [CCGCGGACGCGTGGGTGGCGATCGGCGGAGGAAAGTTTAAAAAGAAAAGCGACAAAAAGCGCTACTTTGAGCAGCAGGCGGACGAATCAGCAACGCCAGAACCACAGCCGAGTGAAGTGCAAGGCCGTCCGGCCAAAATCGTATTCGACGACGAAGGTGAGCAACGCGTGGTGCCGATTGATTACACGGCTGGCGAAACCGGCACATCGTCGCGTGCTACCGGTGCGAGGCGCAAGAAGGCACATGCGGACGGTGAAGATGATGACCACGAGGGTGACGAGGATGAGGAGGAGGACCAGCTGACCAAGCTGTGGTACAACAACTTCGAACCATACAATCTGGTCGGCGAGATGGTGGACATGAAGGACGCGGAATTGGCGGAACTGCGCAACATCTGCAAGGTGGCATTCGAGGCCGAGTGCCGGGCCCGCAAGCGGTACGATCCGTCCGATGCAAAGTGGCTGCTGAGCGCGCTGGAAAAGGGTACGCTGCGCGACAGGGCCAACGCGGGGGCGCTGCTGGTGCAGACGAACCCGTTCTGCCATCTGCACGCGCTCGACACGCTGGTGGGCATGGTGAAACCGTCCAACAAGGGCTTCCTGGACGTGGTCGAGGTGCTGACCGAGCTGATGCTGAAATCGCTGATGCCCACCCATCGCAAGCTGATCACGCTGCCGATGCGCGGCACGGACTGGAAG] consensusID : consensus_2926#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence [CCGGCGCACATGTTCGTTCAAAGTAAACAGTTCACAGTTTTTGTATTGTCCACAGCACGATGGCGATCGGCGGAGGAAAGTTTAAAAAGAAAAGCGACAAAAAGCGCTACTTTGAGCAGCAGGCGGACGAATCAGCAACGCCAGAACCACAGCCGAGTGAAGTGCAAGGCCGTCCGGCCAAAATCGTATTCGACGACGAAGGTGAGCAACGCGTGGTGCCGATTGATTACACGGCTGGCGAAACCGGCACATCGTCGCGTGCTACCGGTGCGAGGCGCAAGAAGGCACATGCGGACGGTGAAGATGATGACCACGAGGGTGACGAGGATGAGGAGGAGGACCAGCTGACCAAGCTGTGGTACAACAACTTCGAACCATACAATCTGGTCGGCGAGATGGTGGACATGAAGGACGCGGAATTGGCGGAACTGCGCAACATCTGCAAGGTGGCATTCGAGGCCGAGTGCCGGGCCCGCAAGCGGTACGATCCGTCCGATGCAAAGTGGCTGCTGAGCGCGCTGGAAAAGGGTACGCTGCGCGACAGGGCCAACGCGGGGGCGCTGCTGGTGCAGACGAACCCGTTCTGCCATCTGCACGCGCTCGACACGCTGGTGGGCATGGTGAAACCGTCCAACAAGGCTTTCCTGGACGTGGTCGAGGTGCTGACCGAGCTGATGCTGAAATCGC] [+] EMBL BM598222 [CCGGCGCACATGTTCGTTCAAAGTAAACAGTTCACAGTTTTTGTATTGTCCACAGCACGATGGCGATCGGCGGAGGAAAGTTTAAAAAGAAAAGCGACAAAAAGCGCTACTTTGAGCAGCAGGCGGACGAATCAGCAACGCCAGAACCACAGCCGAGTGAAGTGCAAGGCCGTCCGGCCAAAATCGTATTCGACGACGAAGGTGAGCAACGCGTGGTGCCGATTGATTACACGGCTGGCGAAACCGGCACATCGTCGCGTGCTACCGGTGCGAGGCGCAAGAAGGCACATGCGGACGGTGAAGATGATGACCACGAGGGTGACGAGGATGAGGAGGAGGACCAGCTGACCAAGCTGTGGTACAACAACTTCGAACCATACAATCTGGTCGGCGAGATGGTGGACATGAAGGACGCGGAATTGGCGGAACTGCGCAACATCTGCAAGGTGGCATTCGAGGCCGAGTGCCGGGCCCGCAAGCGGTACGATCCGTCCGATGCAAAGTGGCTGCTGAGCGCGCTGGAAAAGGGTACGCTGCGCGACAGGGCCAACGCGGGGGCGCTGCTGGTGCAGACGAACCCGTTCTGCCATCTGCACGCGCTCGACACGCTGGTGGGCATGGTGAAACCGTCCAACAAGGCTTTCCTGGACGTGGTCGAGGTGCTGACCGAGCTGATGCTGAAATCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2926#0 ---------------------------------------------CCGCGGACGCGTGGG 15 consensus_2926#1 CCGGCGCACATGTTCGTTCAAAGTAAACAGTTCACAGTTTTTGTATTGTCCACAGCACGA 60 * ** * consensus_2926#0 TGGCGATCGGCGGAGGAAAGTTTAAAAAGAAAAGCGACAAAAAGCGCTACTTTGAGCAGC 75 consensus_2926#1 TGGCGATCGGCGGAGGAAAGTTTAAAAAGAAAAGCGACAAAAAGCGCTACTTTGAGCAGC 120 ************************************************************ consensus_2926#0 AGGCGGACGAATCAGCAACGCCAGAACCACAGCCGAGTGAAGTGCAAGGCCGTCCGGCCA 135 consensus_2926#1 AGGCGGACGAATCAGCAACGCCAGAACCACAGCCGAGTGAAGTGCAAGGCCGTCCGGCCA 180 ************************************************************ consensus_2926#0 AAATCGTATTCGACGACGAAGGTGAGCAACGCGTGGTGCCGATTGATTACACGGCTGGCG 195 consensus_2926#1 AAATCGTATTCGACGACGAAGGTGAGCAACGCGTGGTGCCGATTGATTACACGGCTGGCG 240 ************************************************************ consensus_2926#0 AAACCGGCACATCGTCGCGTGCTACCGGTGCGAGGCGCAAGAAGGCACATGCGGACGGTG 255 consensus_2926#1 AAACCGGCACATCGTCGCGTGCTACCGGTGCGAGGCGCAAGAAGGCACATGCGGACGGTG 300 ************************************************************ consensus_2926#0 AAGATGATGACCACGAGGGTGACGAGGATGAGGAGGAGGACCAGCTGACCAAGCTGTGGT 315 consensus_2926#1 AAGATGATGACCACGAGGGTGACGAGGATGAGGAGGAGGACCAGCTGACCAAGCTGTGGT 360 ************************************************************ consensus_2926#0 ACAACAACTTCGAACCATACAATCTGGTCGGCGAGATGGTGGACATGAAGGACGCGGAAT 375 consensus_2926#1 ACAACAACTTCGAACCATACAATCTGGTCGGCGAGATGGTGGACATGAAGGACGCGGAAT 420 ************************************************************ consensus_2926#0 TGGCGGAACTGCGCAACATCTGCAAGGTGGCATTCGAGGCCGAGTGCCGGGCCCGCAAGC 435 consensus_2926#1 TGGCGGAACTGCGCAACATCTGCAAGGTGGCATTCGAGGCCGAGTGCCGGGCCCGCAAGC 480 ************************************************************ consensus_2926#0 GGTACGATCCGTCCGATGCAAAGTGGCTGCTGAGCGCGCTGGAAAAGGGTACGCTGCGCG 495 consensus_2926#1 GGTACGATCCGTCCGATGCAAAGTGGCTGCTGAGCGCGCTGGAAAAGGGTACGCTGCGCG 540 ************************************************************ consensus_2926#0 ACAGGGCCAACGCGGGGGCGCTGCTGGTGCAGACGAACCCGTTCTGCCATCTGCACGCGC 555 consensus_2926#1 ACAGGGCCAACGCGGGGGCGCTGCTGGTGCAGACGAACCCGTTCTGCCATCTGCACGCGC 600 ************************************************************ consensus_2926#0 TCGACACGCTGGTGGGCATGGTGAAACCGTCCAACAAGGGCTTCCTGGACGTGGTCGAGG 615 consensus_2926#1 TCGACACGCTGGTGGGCATGGTGAAACCGTCCAACAAGGCTTTCCTGGACGTGGTCGAGG 660 *************************************** ******************* consensus_2926#0 TGCTGACCGAGCTGATGCTGAAATCGCTGATGCCCACCCATCGCAAGCTGATCACGCTGC 675 consensus_2926#1 TGCTGACCGAGCTGATGCTGAAATCGC--------------------------------- 687 *************************** consensus_2926#0 CGATGCGCGGCACGGACTGGAAG 698 consensus_2926#1 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||