These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2942#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 891 fasta sequence [GCAAGAATCNCGCACGAGGGAAACATTTGAACGCATTTTACCATCGTCTGGGAGATATTCGGGTCGTGGATTGTGTGCAAACGTAAATAACACATGATGGCAGCAAAGAGAAAGCAGGTGGTGCGCCATGTTGTACTGACATGCGTCATACTGTTGGCATTGCTAGCAGAGGAGACTGTTGCCAAACGCTACGAAGAGATTGGAAACCGACATCAGGGCGACATAGTGCTGTCCGATCTACAGTCCGATGCGGCTAATGTCGGTGCCACACAGATCGTACAGGATGCCTTTAGGTGGGTTAAGGGCATTGTACCGTACGAGATTTCACCGGAGTTCTCTCAACTCGAGATGAATCAGATCAAGTACGCGATGGATAGGATTGCGTCGTACAGCTGTGTTCGGTTTGGTCCGAGGAGTCCCACAGACAGGCAGTATCTCAACATTACCGCCAGTCCGACTGGATGCTGGGCAACGCTTGGTATGAATTTACTGGCCAATCAGCTTAATCTGCAGCGAGAAGGATGTCTCGAAACAGGCGTTATTATGCACCAGCTTCTGCATGTGCTCGGCCTAACGCACCCACAGTCCCGCCCGGATCGTGACTTTTACGTACTGGTGGAGCAGGATGCGATCGATACGAGTCTGAAGAAAAATCTGGACAAATATCAGAAGGGTGTGATCGAGGGAACTTTTGGGCAATACCCGTACGATTAACGAAAAGCATTCTTCACTGTCACAGTCGGATGCCGTTCCGGGGTTCGGTCGGGCATCGAATTCGAGGCGANCCGTCGTTCCATTGGGTTGATGGTTGAGATCGGTCAACGAAACGAGTTANGCCTGAAGGATTTGCGGCAAAGGCTGAACAAGGANTTCGACTACCAAGTACTGGTC] [+] EMBL BX467451 [GCAAGAATCNCGCACGAGGGAAACATTTGAACGCATTTTACCATCGTCTGGGAGATATTCGGGTCGTGGATTGTGTGCAAACGTAAATAACACATGATGGCAGCAAAGAGAAAGCAGGTGGTGCGCCATGTTGTACTGACATGCGTCATACTGTTGGCATTGCTAGCAGAGGAGACTGTTGCCAAACGCTACGAAGAGATTGGAAACCGACATCAGGGCGACATAGTGCTGTCCGATCTACAGTCCGATGCGGCTAATGTCGGTGCCACACAGATCGTACAGGATGCCTTTAGGTGGGTTAAGGGCATTGTACCGTACGAGATTTCACCGGAGTTCTCTCAACTCGAGATGAATCAGATCAAGTACGCGATGGATAGGATTGCGTCGTACAGCTGTGTTCGGTTTGGTCCGAGGAGTCCCACAGACAGGCAGTATCTCAACATTACCGCCAGTCCGACTGGATGCTGGGCAACGCTTGGTATGAATTTACTGGCCAATCAGCTTAATCTGCAGCGAGAAGGATGTCTCGAAACAGGCGTTATTATGCACCAGCTTCTGCATGTGCTCGGCCTAACGCACCCACAGTCCCGCCCGGATCGTGACTTTTACGTACTGGTGGAGCAGGATGCGATCGATACGAGTCTGAAGAAAAATCTGGACAAATATCAGAAGGGTGTGATCGAGGGAACTTTTGGGCAATACCCGTACGATTAACGAAAAGCATTCTTCACTGTCACAGTCGGATGCCGTTCCGGGGTTCGGTCGGGCATCGAATTCGAGGCGANCCGTCGTTCCATTGGGTTGATGGTTGAGATCGGTCAACGAAACGAGTTANGCCTGAAGGATTTGCGGCAAAGGCTGAACAAGGANTTCGACTACCAAGTACTGGTC] consensusID : consensus_2942#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 822 fasta sequence [GAAATTCCCCGAGGTTTGAACGCATTTACCATCGTCTGGGAGATATTCGGGTCGTGGATTGTGTGCAAACGTAAATAACACATGATGGCAGCAAAGAGAAAGCAGGTGGTGCGCCATGTTGTACTGACATGCGTCATACTGTTGGCATTGCTAGCAGAGGAGACTGTTGCCAAACGCTACGAAGAGATTGGAAACCGACATCAGGGCGACATAGTGCTGTCCGATCTACAGTCCGATGCGGCTAATGTCGGTGCCACACAGATCGTACAGGATGCCTTTAGGTGGGTTAAGGGCATTGTACCGTACGAGATTTCACCGGAGTTCTCTCAACTCGAGATGAATTCAGAAATCAAGTACGCGATGGATAGGATTGCGTCGTACAGCTGTGTTCGGTTTGGTCCGAGGAGTCCCACAGACAGGCAGTATCTCAACATTACCGCCAGTCCGACTGGATGCTGGGCAACGCTTGGTATGAATTTACTGGCCAATCAGCTTAATCTGCAGCGAGAAGGATGTCTCGAAACAGGCGTTATTATGCACCAGCTTCTGCATGTGCTCGGCCTAACGCACCCACAGTCCCGCCCGGATCGTGACCTTTTACGTACTGGTGGAGCAGATGCGATCGATACGAGTCTGACAGAACAAATCTGGGACAAACTATTCCGCAACGGTGTGATCGCAGGGACTTTGGCATACCNGAACGAATACGAAAGCATTCTACACAGGCAAACGAAGCANTCGGCGACGGCATCAATCAGACGACACCGACGTACCNTGGGNTNAGNTGAAACCGGCCACAAGACAGATTAGCCTAGANTTCCC] [+] EMBL AL932528 [GAAATTCCCCGAGGTTTGAACGCATTTACCATCGTCTGGGAGATATTCGGGTCGTGGATTGTGTGCAAACGTAAATAACACATGATGGCAGCAAAGAGAAAGCAGGTGGTGCGCCATGTTGTACTGACATGCGTCATACTGTTGGCATTGCTAGCAGAGGAGACTGTTGCCAAACGCTACGAAGAGATTGGAAACCGACATCAGGGCGACATAGTGCTGTCCGATCTACAGTCCGATGCGGCTAATGTCGGTGCCACACAGATCGTACAGGATGCCTTTAGGTGGGTTAAGGGCATTGTACCGTACGAGATTTCACCGGAGTTCTCTCAACTCGAGATGAATTCAGAAATCAAGTACGCGATGGATAGGATTGCGTCGTACAGCTGTGTTCGGTTTGGTCCGAGGAGTCCCACAGACAGGCAGTATCTCAACATTACCGCCAGTCCGACTGGATGCTGGGCAACGCTTGGTATGAATTTACTGGCCAATCAGCTTAATCTGCAGCGAGAAGGATGTCTCGAAACAGGCGTTATTATGCACCAGCTTCTGCATGTGCTCGGCCTAACGCACCCACAGTCCCGCCCGGATCGTGACCTTTTACGTACTGGTGGAGCAGATGCGATCGATACGAGTCTGACAGAACAAATCTGGGACAAACTATTCCGCAACGGTGTGATCGCAGGGACTTTGGCATACCNGAACGAATACGAAAGCATTCTACACAGGCAAACGAAGCANTCGGCGACGGCATCAATCAGACGACACCGACGTACCNTGGGNTNAGNTGAAACCGGCCACAAGACAGATTAGCCTAGANTTCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2942#0 GCAAGAATCNCGCACGAGGGAAACATTTGAACGCATTTTACCATCGTCTGGGAGATATTC 60 consensus_2942#1 ----GAAATTCCC-CGAGG------TTTGAACGCATTT-ACCATCGTCTGGGAGATATTC 48 *** * * ***** ************* ********************* consensus_2942#0 GGGTCGTGGATTGTGTGCAAACGTAAATAACACATGATGGCAGCAAAGAGAAAGCAGGTG 120 consensus_2942#1 GGGTCGTGGATTGTGTGCAAACGTAAATAACACATGATGGCAGCAAAGAGAAAGCAGGTG 108 ************************************************************ consensus_2942#0 GTGCGCCATGTTGTACTGACATGCGTCATACTGTTGGCATTGCTAGCAGAGGAGACTGTT 180 consensus_2942#1 GTGCGCCATGTTGTACTGACATGCGTCATACTGTTGGCATTGCTAGCAGAGGAGACTGTT 168 ************************************************************ consensus_2942#0 GCCAAACGCTACGAAGAGATTGGAAACCGACATCAGGGCGACATAGTGCTGTCCGATCTA 240 consensus_2942#1 GCCAAACGCTACGAAGAGATTGGAAACCGACATCAGGGCGACATAGTGCTGTCCGATCTA 228 ************************************************************ consensus_2942#0 CAGTCCGATGCGGCTAATGTCGGTGCCACACAGATCGTACAGGATGCCTTTAGGTGGGTT 300 consensus_2942#1 CAGTCCGATGCGGCTAATGTCGGTGCCACACAGATCGTACAGGATGCCTTTAGGTGGGTT 288 ************************************************************ consensus_2942#0 AAGGGCATTGTACCGTACGAGATTTCACCGGAGTTCTCTCAACTCGAGATGAATC---AG 357 consensus_2942#1 AAGGGCATTGTACCGTACGAGATTTCACCGGAGTTCTCTCAACTCGAGATGAATTCAGAA 348 ****************************************************** * consensus_2942#0 ATCAAGTACGCGATGGATAGGATTGCGTCGTACAGCTGTGTTCGGTTTGGTCCGAGGAGT 417 consensus_2942#1 ATCAAGTACGCGATGGATAGGATTGCGTCGTACAGCTGTGTTCGGTTTGGTCCGAGGAGT 408 ************************************************************ consensus_2942#0 CCCACAGACAGGCAGTATCTCAACATTACCGCCAGTCCGACTGGATGCTGGGCAACGCTT 477 consensus_2942#1 CCCACAGACAGGCAGTATCTCAACATTACCGCCAGTCCGACTGGATGCTGGGCAACGCTT 468 ************************************************************ consensus_2942#0 GGTATGAATTTACTGGCCAATCAGCTTAATCTGCAGCGAGAAGGATGTCTCGAAACAGGC 537 consensus_2942#1 GGTATGAATTTACTGGCCAATCAGCTTAATCTGCAGCGAGAAGGATGTCTCGAAACAGGC 528 ************************************************************ consensus_2942#0 GTTATTATGCACCAGCTTCTGCATGTGCTCGGCCTAACGCACCCACAGTCCCGCCCGGAT 597 consensus_2942#1 GTTATTATGCACCAGCTTCTGCATGTGCTCGGCCTAACGCACCCACAGTCCCGCCCGGAT 588 ************************************************************ consensus_2942#0 CGTGAC-TTTTACGTACTGGTGGAGCAGGATGCGATCGATACGAGTCTGA-AGAA-AAAT 654 consensus_2942#1 CGTGACCTTTTACGTACTGGTGGAGCAG-ATGCGATCGATACGAGTCTGACAGAACAAAT 647 ****** ********************* ********************* **** **** consensus_2942#0 CTGG-ACAAA---TATCAGAAGGGTGTGATCGAGGGAACTTTTGGGCAATACCCGTACGA 710 consensus_2942#1 CTGGGACAAACTATTCCGCAACGGTGTGATCGCAGGGACTTT--GGCA-TACCNGAACGA 704 **** ***** * * ** ********** ** ***** **** **** * **** consensus_2942#0 TTAACGAAAAGCATTCTTCACTGTCACAGTCGGATGCCGTTCCGGGGTTCGGTCGGGCAT 770 consensus_2942#1 ATAC--GAAAGCATTCTACACAG--GCAAACGAAG--CANTCGGCGAC-------GGCAT 751 ** ********** *** * ** ** * * ** * * ***** consensus_2942#0 CGAATTCGAGGCGANCCGTCGTTCCATTGGGTTGATGGTTGAGATCGGTCAACGAAACGA 830 consensus_2942#1 CAA--TCAGACGACACCGACGTACCNTGGGNTNA---GNTGAAACCGGCCA-CAAGACAG 805 * * ** *** *** ** * ** * * *** * *** ** * * ** consensus_2942#0 GTTANGCCTGAAGGATTTGCGGCAAAGGCTGAACAAGGANTTCGACTACCAAGTACTGGT 890 consensus_2942#1 ATTAGCCT---AGANTTCCC---------------------------------------- 822 *** * ** ** * consensus_2942#0 C 891 consensus_2942#1 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||