These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2944#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [AGGCCAAGAATCCGCACGAGNGGGAATTTGTCCACCACTTCACCGCTAGAGCAGGAAGAGCAGGAGTCGGTCAACACAAAGCTCTCGTCGTCGCTGAAATCGGACGAGATGGAGCGATCGAGCGAACAGGTCGACGAACGGGAACAGTCCCGGGGCGAATTGTCCTTCATCGGGGGGCGCCATTCGATCAGCATGCGTGCGTCGATCGGCGAGAAGCTGTCCTCGACACACATTGGCGAGATGGATCCTCTCGGTCCAATGGCCAATGTTGAAACGGTTTTTGCTTCAGCTGAGAACGCGCAATCCCCTGTCGAGGAGGGCGCACACAGCTCTGAAAAGTTGGAGTCGAACTCCCCTGCAAAGGATGATTCGAGCAGCGTGCGATTGATCGAAAAATCGGAAGAAATCCTCTGCCTCAGCAGCAGCGACGATAGGGTGAAGGTGACGTTCGTGGAGGAAACGAGACCATCGATCGACGTTAAGACTCGTCCACAAGCGCTCGTTCAACCGACCATAACGTCGTTCGTGCGCAGTCAGGACACCGGCGCAGCAGCGAACAGCGGCGTCTCCCAAAGGCGGAGTACGACGCCAAGGTGCNGGCGGCATGGGNCGGGGAGCTTAAAAAGCCAGGTCGTGATGGATCGACAAACGTTGATTGCGCCAACAGTTGNCCAAGGCTGG] [+] EMBL BX468253 [AGGCCAAGAATCCGCACGAGNGGGAATTTGTCCACCACTTCACCGCTAGAGCAGGAAGAGCAGGAGTCGGTCAACACAAAGCTCTCGTCGTCGCTGAAATCGGACGAGATGGAGCGATCGAGCGAACAGGTCGACGAACGGGAACAGTCCCGGGGCGAATTGTCCTTCATCGGGGGGCGCCATTCGATCAGCATGCGTGCGTCGATCGGCGAGAAGCTGTCCTCGACACACATTGGCGAGATGGATCCTCTCGGTCCAATGGCCAATGTTGAAACGGTTTTTGCTTCAGCTGAGAACGCGCAATCCCCTGTCGAGGAGGGCGCACACAGCTCTGAAAAGTTGGAGTCGAACTCCCCTGCAAAGGATGATTCGAGCAGCGTGCGATTGATCGAAAAATCGGAAGAAATCCTCTGCCTCAGCAGCAGCGACGATAGGGTGAAGGTGACGTTCGTGGAGGAAACGAGACCATCGATCGACGTTAAGACTCGTCCACAAGCGCTCGTTCAACCGACCATAACGTCGTTCGTGCGCAGTCAGGACACCGGCGCAGCAGCGAACAGCGGCGTCTCCCAAAGGCGGAGTACGACGCCAAGGTGCNGGCGGCATGGGNCGGGGAGCTTAAAAAGCCAGGTCGTGATGGATCGACAAACGTTGATTGCGCCAACAGTTGNCCAAGGCTGG] consensusID : consensus_2944#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence [CCGCCCACGCGTCCGATTCGAGCAGCGTGCGATTGATCGAAAAATCGGAAGAAATCCTCTGCCTCAGCAGCAGCGACGATGAGGGTGAAGTGACGTTCGTGGAGGAAACGAGACCATCGATCGACGTTAAGACTCGTCCACAAGCGCTCGTTCAACCGACCATAACGTCGTTCGTGCGCAGTCAGGACACGGCGCAGCAGCGACAGCGCGTCTCCCAAAGCGAGTACGACGCCAAGGTGCGGCGCATGGCGGAGCTTAAAAGCCAGGTCGTGATGATCGACAACGTGATGCGCAACAGTGCCAAGCTGCCGGACAAGGGGGCCGGGTTGGTGCGCCGGCTGGCCGAGGTAAAGTCGCAAATATTCGAGCTGTCGAAGGACATCGAGATGACGCGTGCGACGCCGAGCAAGGGCATCAAGAAAACGATACAGCGAAACTTTGACGAAAACATCAGCGGAGGCGATACGAAGCCCCGGCCGGCCGACCACATCTCGTGGGACACGATCAAGCGGGCGACGGACGATATACAGCCGCGGCACACCGGCAAGCAGGGCATTGCGACGTTCGAGAACCAGAAGCTGCTCACGATGGACCGTCTGGAGACGCTGCACAAGTCGATCGAGACGTGCCCGTCCGAGGACACGCTGGCCGATCCGCCCAAGCTGCTCAAGATCGAGCTG] [+] EMBL BM587648 [CCGCCCACGCGTCCGATTCGAGCAGCGTGCGATTGATCGAAAAATCGGAAGAAATCCTCTGCCTCAGCAGCAGCGACGATGAGGGTGAAGTGACGTTCGTGGAGGAAACGAGACCATCGATCGACGTTAAGACTCGTCCACAAGCGCTCGTTCAACCGACCATAACGTCGTTCGTGCGCAGTCAGGACACGGCGCAGCAGCGACAGCGCGTCTCCCAAAGCGAGTACGACGCCAAGGTGCGGCGCATGGCGGAGCTTAAAAGCCAGGTCGTGATGATCGACAACGTGATGCGCAACAGTGCCAAGCTGCCGGACAAGGGGGCCGGGTTGGTGCGCCGGCTGGCCGAGGTAAAGTCGCAAATATTCGAGCTGTCGAAGGACATCGAGATGACGCGTGCGACGCCGAGCAAGGGCATCAAGAAAACGATACAGCGAAACTTTGACGAAAACATCAGCGGAGGCGATACGAAGCCCCGGCCGGCCGACCACATCTCGTGGGACACGATCAAGCGGGCGACGGACGATATACAGCCGCGGCACACCGGCAAGCAGGGCATTGCGACGTTCGAGAACCAGAAGCTGCTCACGATGGACCGTCTGGAGACGCTGCACAAGTCGATCGAGACGTGCCCGTCCGAGGACACGCTGGCCGATCCGCCCAAGCTGCTCAAGATCGAGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2944#0 AGGCCAAGAATCCGCACGAGNGGG-AATTTGTCCACCACTTCACCGCTAGAGCAGGAAGA 59 consensus_2944#1 -----------CCGCCCACGCGTCCGATTCGAGCAGCGTGCGATTGATCGAAAAATCGGA 49 **** * * * *** * ** * * * * ** * ** consensus_2944#0 GCAGGAG-TCGGTCAACACAAAGCTCTCGTCGTCGCTGAAATCGGACGAGATGGAGCGAT 118 consensus_2944#1 AGAAATCCTCTGCCTCAGCAGCAGCGACGATGAGGGTGAAGTGACGTTCG-TGGAGGAAA 108 * ** * * ** ** * * **** * * ***** * consensus_2944#0 CGAGCGAACAGGTCGACGAACGGGAACAGTCCCGGGGCGAATTGTCCTTCATCGGGGGGC 178 consensus_2944#1 CGAGACCATCGATCGACGT-TAAGACTCGTCCACAAGCGC-TCGTTCAACCGACCATAAC 166 **** * * ****** ** **** *** * ** * * * consensus_2944#0 GCCATTCGATC--AGCATGCGTGCGTCG-ATCGGCGAGAAGCTGTCCTCGACACACATTG 235 consensus_2944#1 GTCGTTCGTGCGCAGTCAGGACACGGCGCAGCAGCGACAGCGCGTCTCCCAAA---GCGA 223 * * **** * ** * ** ** * * **** * *** * * * consensus_2944#0 GCGAGATGGATCCTCTCGGTCCAATGGCCAATGTTGAAACGGTTTTTGCTTCAGCTGAGA 295 consensus_2944#1 GTACGACGCCAAGGTGCGGCGCA-TGGCGGAGCTTAAAAGCCAGGTCGTGATGATCGACA 282 * ** * *** ** **** * ** *** * * ** * consensus_2944#0 ACGCGCAATCCCCTGTCGAGGAGGGCGCACACAGCTCTGAAAAGTTGGAGTCGAACTCCC 355 consensus_2944#1 ACGTGATGCGCAACAGTGCCAAGCTGCCGGACAAGGGGGCCGGGTTGGTGC---GCCGGC 339 *** * * * ** * *** * ***** * * * consensus_2944#0 CTGCAAAGGATGATTCGAGCAGCGTGCGATTGATCGAAAAATCGGAAGAAATCCTCTGC- 414 consensus_2944#1 TGGCCGAGGTAAAGTCGCA-AATATTCGAGCTGTCGAAGGACATCGAGATGACGCGTGCG 398 ** *** * *** * * *** ***** * *** * *** consensus_2944#0 ---CTCAGCAGCAGCGACGATAGGGTGAAG--GTGACGTTCGTGGAGGAAACGAGACCAT 469 consensus_2944#1 ACGCCGAGCAAGGGCATCAAGAAAACGATACAGCGAAACTT-TGACGAAAACATCAGCGG 457 * **** ** * * * ** * ** * ** * **** * * consensus_2944#0 CGATCGACGTTAAGACTCGTCCACAAGCGCTCGTTCAACCGACCATAACGTCGTTCGTGC 529 consensus_2944#1 AGG-CGATACGAAGCCCCGGCCGGCCGACCACATCTCGTGGGACACGA--TCAAGCGGGC 514 * *** *** * ** ** * * * * * ** * ** ** ** consensus_2944#0 G-CAGTCAGGACACCGGCGCAGCAG--CGAACAGCGGCGTCTCCCAAAGGCGGAGTACGA 586 consensus_2944#1 GACGGACGATATACAGCCGCGGCACACCGGCAAGCAGGGCATTGCGACGTTCGAGAACCA 574 * * * * * ** * *** *** ** *** * * * * * * *** ** * consensus_2944#0 CGCCAAGGTGCNGGCGGCATGGGNCGGGGAGCTTAAAAAGCCAG----GTCGTGATGGAT 642 consensus_2944#1 GAAGCTGCTCACGATGGACCGTCTGGAGACGCTGCACAAGTCGATCGAGACGTGCCCGTC 634 * * * ** * * * *** * *** * * **** * consensus_2944#0 CGACAA-ACGTTGATTGCGCCAAC--AGTTGNCCAAGGCTGG---- 681 consensus_2944#1 CGAGGACACGCTGGCCGATCCGCCCAAGCTGCTCAAGATCGAGCTG 680 *** * *** ** * ** * ** ** **** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||