cluster # 2950

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Anopheles gambiae
cluster # 2950 cluster # 2950 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2950#0 length = 962 sequences # 1

consensus_2950#1 length = 742 sequences # 1

consensusID : consensus_2950#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 962
fasta sequence

                              [CCCCCCCCCCCACTAGCTCGCAGCAGATCGCCGAGGTTATATCCATCCACGATGGATAAACATCCAAATCTAAACCATAAACGATCGAAAAAGCATATTACGTTTGAGCATAGACTTGCAGCCGCAACGTGCCTATCTAGCAGAAATACTGGAGATAGGACGAGCCGCAACGGNATTACGTGCACATNCCTGGAATATATTGCGAACGGATCNNACAGCAAACGAACGTGTAGTGCGCGCNTCATCAACTCCAATGCCCCTCTAAAATGCATTTTCTCACCCACCACCGACTAAGATTTGGTGACGNAAACAAGTATTAAACGCATACGATGAAGCACATTTCGGATGGGTCACAATGTATCAAACTTCCACAAGCAACGTAACGAAACGGCTCTGCAAACCTGGTTACCCCTGGGNCACCAAAAACACAGAAGTATTGCGTCCACTGGTTGTCCTNCTCTGACTGGCTAACACGCTGCAGTAGGNTGGAGTNTTCNGAAGGCGGAATGTTCCCGCAAGCGGGACCAAGGGCGTAGCAGGNGGAAAGCCCCAAGGGTAAAACACATATCTAGGGGCAGTTNANACAGATTCGAACATTGGCGCACAGNGTTGGGCGNCCCAAANCAGTACAAGAAACCACGGGCGCTCTTACGTTTGCTCCCCGGATGGCAAAAAGCAATTGGGTANTGCCCCAAACGACGAAACAAGCCGGGCGTANTTTGGGCCGGGACATCGGAAATTGGCACACCGTTGGGGAAGACAGGANAAACATTGGNGTAACATGNNCCTTGGCAATTCCCTCAAACTGNCTGCCACGGCCGGCGGGAAGGCATTTTAAATCATCGCACATTGGGGACTAACCGCCACAAGATGTTGGGGTGGAACATTGGCCGGGGANATTATCACTGGGGTCGATATGGGGAGTTTGCCAACGGAATAGCAATCTNTTACGCGAGAGAACC]

[+] EMBL AL932964             [CCCCCCCCCCCACTAGCTCGCAGCAGATCGCCGAGGTTATATCCATCCACGATGGATAAACATCCAAATCTAAACCATAAACGATCGAAAAAGCATATTACGTTTGAGCATAGACTTGCAGCCGCAACGTGCCTATCTAGCAGAAATACTGGAGATAGGACGAGCCGCAACGGNATTACGTGCACATNCCTGGAATATATTGCGAACGGATCNNACAGCAAACGAACGTGTAGTGCGCGCNTCATCAACTCCAATGCCCCTCTAAAATGCATTTTCTCACCCACCACCGACTAAGATTTGGTGACGNAAACAAGTATTAAACGCATACGATGAAGCACATTTCGGATGGGTCACAATGTATCAAACTTCCACAAGCAACGTAACGAAACGGCTCTGCAAACCTGGTTACCCCTGGGNCACCAAAAACACAGAAGTATTGCGTCCACTGGTTGTCCTNCTCTGACTGGCTAACACGCTGCAGTAGGNTGGAGTNTTCNGAAGGCGGAATGTTCCCGCAAGCGGGACCAAGGGCGTAGCAGGNGGAAAGCCCCAAGGGTAAAACACATATCTAGGGGCAGTTNANACAGATTCGAACATTGGCGCACAGNGTTGGGCGNCCCAAANCAGTACAAGAAACCACGGGCGCTCTTACGTTTGCTCCCCGGATGGCAAAAAGCAATTGGGTANTGCCCCAAACGACGAAACAAGCCGGGCGTANTTTGGGCCGGGACATCGGAAATTGGCACACCGTTGGGGAAGACAGGANAAACATTGGNGTAACATGNNCCTTGGCAATTCCCTCAAACTGNCTGCCACGGCCGGCGGGAAGGCATTTTAAATCATCGCACATTGGGGACTAACCGCCACAAGATGTTGGGGTGGAACATTGGCCGGGGANATTATCACTGGGGTCGATATGGGGAGTTTGCCAACGGAATAGCAATCTNTTACGCGAGAGAACC]




>consensus_2950#0
CCCCCCCCCCCACTAGCTCGCAGCAGATCGCCGAGGTTATATCCATCCACGATGGATAAA
CATCCAAATCTAAACCATAAACGATCGAAAAAGCATATTACGTTTGAGCATAGACTTGCA
GCCGCAACGTGCCTATCTAGCAGAAATACTGGAGATAGGACGAGCCGCAACGGNATTACG
TGCACATNCCTGGAATATATTGCGAACGGATCNNACAGCAAACGAACGTGTAGTGCGCGC
NTCATCAACTCCAATGCCCCTCTAAAATGCATTTTCTCACCCACCACCGACTAAGATTTG
GTGACGNAAACAAGTATTAAACGCATACGATGAAGCACATTTCGGATGGGTCACAATGTA
TCAAACTTCCACAAGCAACGTAACGAAACGGCTCTGCAAACCTGGTTACCCCTGGGNCAC
CAAAAACACAGAAGTATTGCGTCCACTGGTTGTCCTNCTCTGACTGGCTAACACGCTGCA
GTAGGNTGGAGTNTTCNGAAGGCGGAATGTTCCCGCAAGCGGGACCAAGGGCGTAGCAGG
NGGAAAGCCCCAAGGGTAAAACACATATCTAGGGGCAGTTNANACAGATTCGAACATTGG
CGCACAGNGTTGGGCGNCCCAAANCAGTACAAGAAACCACGGGCGCTCTTACGTTTGCTC
CCCGGATGGCAAAAAGCAATTGGGTANTGCCCCAAACGACGAAACAAGCCGGGCGTANTT
TGGGCCGGGACATCGGAAATTGGCACACCGTTGGGGAAGACAGGANAAACATTGGNGTAA
CATGNNCCTTGGCAATTCCCTCAAACTGNCTGCCACGGCCGGCGGGAAGGCATTTTAAAT
CATCGCACATTGGGGACTAACCGCCACAAGATGTTGGGGTGGAACATTGGCCGGGGANAT
TATCACTGGGGTCGATATGGGGAGTTTGCCAACGGAATAGCAATCTNTTACGCGAGAGAA
CC

consensusID : consensus_2950#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 742
fasta sequence

                              [ATGGATAAACATCCAAATNTANACCATAAACGATCGAAAAAGCATATTACGTTTGAGCATAGCTTGCAGCCGCAACGTGCCTATCTAGCAGAAATACTGGAGATGGACGAGGCCGAACGGCATTACGTGCACATCCCTGAATATATGCGAACGGATCACAGCAAACGAACGGTAGTGCCGTTCATCAATCCAATGCCCCTCAAAATGCATTTTCTCACCCACCACCGACTAAGATTGGTGACGAAAAAGATTAAACCATCGATGAAGCACATTCGGATGGCAAAATACAACTCACACACTACGAACGTCGAACTGTACCTGGCCACAAACAAATTTGCTCATGTTCTTTGTGTAAGTGATAGTGATTCGAGCGATTCCGAGGACAGCGACNGACCCAGTAACATTTTGGATTACATCAATGCACGTGCCCAACAAAGACAGCTTAGTCCCGATGAACTGTTCCACAAAACGCTTTGCGAGAATGCACTGGAAGAAATGGAAGCTGATCTACGCGCAGCGGAGTTTAAACATGGTACCAATTGGGATGCGGATTTGTCTTGGATGCAAGAGATTACGAACGAAATCAACCCGTTCGAAAACAATCCTCCATTGGACGAAATCTTGCCAGATGAGCAATGCTGCACTGAAACTGTGCAGATTGCCCTGCCGAACTATCACTACTGGGTAAACAATGGCAACATCAAAGACATTTCATCCGAAGTTTTCGAGCAGGAGTATCTTT]

[+] EMBL BX620192             [ATGGATAAACATCCAAATNTANACCATAAACGATCGAAAAAGCATATTACGTTTGAGCATAGCTTGCAGCCGCAACGTGCCTATCTAGCAGAAATACTGGAGATGGACGAGGCCGAACGGCATTACGTGCACATCCCTGAATATATGCGAACGGATCACAGCAAACGAACGGTAGTGCCGTTCATCAATCCAATGCCCCTCAAAATGCATTTTCTCACCCACCACCGACTAAGATTGGTGACGAAAAAGATTAAACCATCGATGAAGCACATTCGGATGGCAAAATACAACTCACACACTACGAACGTCGAACTGTACCTGGCCACAAACAAATTTGCTCATGTTCTTTGTGTAAGTGATAGTGATTCGAGCGATTCCGAGGACAGCGACNGACCCAGTAACATTTTGGATTACATCAATGCACGTGCCCAACAAAGACAGCTTAGTCCCGATGAACTGTTCCACAAAACGCTTTGCGAGAATGCACTGGAAGAAATGGAAGCTGATCTACGCGCAGCGGAGTTTAAACATGGTACCAATTGGGATGCGGATTTGTCTTGGATGCAAGAGATTACGAACGAAATCAACCCGTTCGAAAACAATCCTCCATTGGACGAAATCTTGCCAGATGAGCAATGCTGCACTGAAACTGTGCAGATTGCCCTGCCGAACTATCACTACTGGGTAAACAATGGCAACATCAAAGACATTTCATCCGAAGTTTTCGAGCAGGAGTATCTTT]




>consensus_2950#1
ATGGATAAACATCCAAATNTANACCATAAACGATCGAAAAAGCATATTACGTTTGAGCAT
AGCTTGCAGCCGCAACGTGCCTATCTAGCAGAAATACTGGAGATGGACGAGGCCGAACGG
CATTACGTGCACATCCCTGAATATATGCGAACGGATCACAGCAAACGAACGGTAGTGCCG
TTCATCAATCCAATGCCCCTCAAAATGCATTTTCTCACCCACCACCGACTAAGATTGGTG
ACGAAAAAGATTAAACCATCGATGAAGCACATTCGGATGGCAAAATACAACTCACACACT
ACGAACGTCGAACTGTACCTGGCCACAAACAAATTTGCTCATGTTCTTTGTGTAAGTGAT
AGTGATTCGAGCGATTCCGAGGACAGCGACNGACCCAGTAACATTTTGGATTACATCAAT
GCACGTGCCCAACAAAGACAGCTTAGTCCCGATGAACTGTTCCACAAAACGCTTTGCGAG
AATGCACTGGAAGAAATGGAAGCTGATCTACGCGCAGCGGAGTTTAAACATGGTACCAAT
TGGGATGCGGATTTGTCTTGGATGCAAGAGATTACGAACGAAATCAACCCGTTCGAAAAC
AATCCTCCATTGGACGAAATCTTGCCAGATGAGCAATGCTGCACTGAAACTGTGCAGATT
GCCCTGCCGAACTATCACTACTGGGTAAACAATGGCAACATCAAAGACATTTCATCCGAA
GTTTTCGAGCAGGAGTATCTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2950#0      CCCCCCCCCCCACTAGCTCGCAGCAGATCGCCGAGGTTATATCCATCCACGATGGATAAA 60
consensus_2950#1      ---------------------------------------------------ATGGATAAA 9
                                                                         *********

consensus_2950#0      CATCCAAATCTAAACCATAAACGATCGAAAAAGCATATTACGTTTGAGCATAGACTTGCA 120
consensus_2950#1      CATCCAAATNTANACCATAAACGATCGAAAAAGCATATTACGTTTGAGCATAG-CTTGCA 68
                      ********* ** **************************************** ******

consensus_2950#0      GCCGCAACGTGCCTATCTAGCAGAAATACTGGAGATAGGACGAGCCGCAACGGNATTACG 180
consensus_2950#1      GCCGCAACGTGCCTATCTAGCAGAAATACTGGAGAT-GGACGAGGCCGAACGGCATTACG 127
                      ************************************ ******* *  ***** ******

consensus_2950#0      TGCACATNCCTGGAATATATTGCGAACGGATCNNACAGCAAACGAACGTGTAGTGCGCGC 240
consensus_2950#1      TGCACATCCCTG-AATATAT-GCGAACGGATCACA--GCAAACGAACG-GTAGTGC-CG- 180
                      ******* **** ******* ***********  *  *********** ******* ** 

consensus_2950#0      NTCATCAACTCCAATGCCCCTCTAAAATGCATTTTCTCACCCACCACCGACTAAGATTTG 300
consensus_2950#1      TTCATCAA-TCCAATGCCCCTC-AAAATGCATTTTCTCACCCACCACCGACTAAGATT-G 237
                       ******* ************* *********************************** *

consensus_2950#0      GTGACGNAAACAAGTATTAAACGCATACGATGAAGCACATTTCGGATGGGTCACAATGTA 360
consensus_2950#1      GTGACGAA---AAAGATTAAAC-CAT-CGATGAAGCACATT-CGGATGG--CAAAATACA 289
                      ****** *   **  ******* *** ************** *******  ** ***  *

consensus_2950#0      TCAAACTT-CCACAAGCAACGTAACGAAACGGCTCTGCAAACCTGGTTACCCCTGGGNCA 419
consensus_2950#1      ACTCACACACTACGAACGTCG-AACTGTACCTGGCCACAAACAAATTTGCTCATGTTCTT 348
                       *  **   * ** * *  ** ***   **    *  *****    ** * * **     

consensus_2950#0      CCAAAAACACAGAAGTATTGCGTCCACTGGTTGTCCTNCT-CTGACTGGCTAACACGCTG 478
consensus_2950#1      TGTGTAAGTGATAGTGATTCGAGCGATTCCGAGGACAGCGACNGACCCAGTAACATTTTG 408
                           **   * *   ***    * * *    *  *  *  * ***    *****   **

consensus_2950#0      CAGTAGGNTGGAGTNTTCN------GAAGGCGGAATGTTCCCG-CAAGCGGGACCAAGGG 531
consensus_2950#1      GATTACATCAATGCACGTGCCCAACAAAGACAGCTTAGTCCCGATGAACTGTTCCACAAA 468
                       * **       *             *** * *  *  *****   * * *  ***    

consensus_2950#0      CGTAGCAGGNGGAAAGCCCCAAGGGTAA--AACACATATCTAGGGGCAGTTNANACAGAT 589
consensus_2950#1      ACGCTTTGCGAGAATGCACTGGAAGAAATGGAAGCTGATCTACGCGCAGCGGAG-----T 523
                             *   *** ** *     * **   *  *  ***** * ****   *      *

consensus_2950#0      TCGAACATTG-GCGCACAGNGTTGGGCGNCCCAAANCAGTACAAGAAACCACGGGCGCTC 648
consensus_2950#1      TTAAACATGGTACCAATTGGGATGCGGATTTGTCTTGGATGCAAGAGATTACGAACG--- 580
                      *  ***** *  *  *  * * ** *             * ***** *  ***  **   

consensus_2950#0      TTACGTTTGCTCCCCGGATGGCAAAAAGCAATTGGGTANTGCCCCAAACGACGAAACAAG 708
consensus_2950#1      --AAATCAACCCGTTCGAAAACAATCCTCCATTGGACGAAATCTTGCCAGATGAGCAATG 638
                        *  *   * *    **   ***    * *****       *      ** **   * *

consensus_2950#0      CCGGGCGTANTTTGGGCCGGGACATCGGAAATTGGCACACCGTTGGGGAAGACAGGANAA 768
consensus_2950#1      CTGCACTGAAACTGTGCAGATTGCCCTGCCGAACTATCACTACTGGGTAA-ACAATGGCA 697
                      * *  *  *   ** ** *      * *         ***   **** ** ***     *

consensus_2950#0      ACATTGGNGTAACATGNNCCTTGGCAATTCCCTCAAACTGNCTGCCACGGCCGGCGGGAA 828
consensus_2950#1      ACATCAAAGACATTTCATCCGAAGTTTTCGAGCAGGAGTATCTTT--------------- 742
                      ****    *  *  *   **   *   *        * *  **                 

consensus_2950#0      GGCATTTTAAATCATCGCACATTGGGGACTAACCGCCACAAGATGTTGGGGTGGAACATT 888
consensus_2950#1      ------------------------------------------------------------
                                                                                  

consensus_2950#0      GGCCGGGGANATTATCACTGGGGTCGATATGGGGAGTTTGCCAACGGAATAGCAATCTNT 948
consensus_2950#1      ------------------------------------------------------------
                                                                                  

consensus_2950#0      TACGCGAGAGAACC 962
consensus_2950#1      --------------