These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_300#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1033 fasta sequence [CATGCAGAATCGCCCGAGGTTAATTCACAACGCGAAAAAATGGCCGCATCGAAGCTACAATTAAAAGCCAGTGCGCTACCGATGCGGTCACACAAGAGTGTCACGGGCAGCAATATAGAGTGAGCTGATTTCAAGCATACAAAGTGGTAAAAGATTACCTTGAACGATCTGCTACACCGCGATTTGTGTGTACGTGGACTGCTGAGTTCTGTGTGTAGTGCACGAAATGTGAACTGTGCAATAATCCCCCCCTCTCCCCCCCGCGCCCAAACGCAACTGTAAACTGTGCGAGGAATATCAAGCTGTGGNGCGTGAGAGCGATGCCGGCAGAAGCAGTGAGCAGCAGAACGAGCNAGAGTGCTGAGCACTAAACACACGCAGAGTGTNTGTAGATTTTTGGCTTGCGATCCATACAACCGAGGAGCTAGATAATTCACNGTTANGGTCCACATTCTTTGNTGTAACATGCCNCNAGCAAACCCCAGCGCTTGCACACACACANAACGCCCGAGCGCAGGTAAGCANACAGGGTAGGGACANCCAGGNGTGTTCGGTTGTAGGTTGNACAGTTGGAACAGTCGACCGGTGTCATANCGCGTAGAGGAAATNNNCGCGCAGTCACACTNAAACAANGGGTGAGGATACCCCTNTTNATACGCGGTTACGCCTAAANTAAACGAGACAGAATAAAAAAGGAATCNGANGTGCAACGTTGCTCGNGAACTATAATAANGCCAACAGGGGCAGGAACTAAAGGCTTAGCTTCACCNNGGTGCANACGCCATNATGGGTTGAAGCANTCCCCNCTNGGTACCCAAACNGTGGTGCAGCNAAGCGANCACGGGGACTTACACAAANTNNCTGTGGCCTCGTGNCNAAACANANAACANACGGAGACGCCNNACNACCCCGCCCTAAAAACACGNGTGGATATTGTNNCNGNNACGNAACATATTCCCGATTNCGTGANTGGGTCTAGCATTNAGTCCTTNGGAGACGGNAGNNCGGCAGACAACGCTNTNACATCGTGCAC] [+] EMBL AL933591 [CATGCAGAATCGCCCGAGGTTAATTCACAACGCGAAAAAATGGCCGCATCGAAGCTACAATTAAAAGCCAGTGCGCTACCGATGCGGTCACACAAGAGTGTCACGGGCAGCAATATAGAGTGAGCTGATTTCAAGCATACAAAGTGGTAAAAGATTACCTTGAACGATCTGCTACACCGCGATTTGTGTGTACGTGGACTGCTGAGTTCTGTGTGTAGTGCACGAAATGTGAACTGTGCAATAATCCCCCCCTCTCCCCCCCGCGCCCAAACGCAACTGTAAACTGTGCGAGGAATATCAAGCTGTGGNGCGTGAGAGCGATGCCGGCAGAAGCAGTGAGCAGCAGAACGAGCNAGAGTGCTGAGCACTAAACACACGCAGAGTGTNTGTAGATTTTTGGCTTGCGATCCATACAACCGAGGAGCTAGATAATTCACNGTTANGGTCCACATTCTTTGNTGTAACATGCCNCNAGCAAACCCCAGCGCTTGCACACACACANAACGCCCGAGCGCAGGTAAGCANACAGGGTAGGGACANCCAGGNGTGTTCGGTTGTAGGTTGNACAGTTGGAACAGTCGACCGGTGTCATANCGCGTAGAGGAAATNNNCGCGCAGTCACACTNAAACAANGGGTGAGGATACCCCTNTTNATACGCGGTTACGCCTAAANTAAACGAGACAGAATAAAAAAGGAATCNGANGTGCAACGTTGCTCGNGAACTATAATAANGCCAACAGGGGCAGGAACTAAAGGCTTAGCTTCACCNNGGTGCANACGCCATNATGGGTTGAAGCANTCCCCNCTNGGTACCCAAACNGTGGTGCAGCNAAGCGANCACGGGGACTTACACAAANTNNCTGTGGCCTCGTGNCNAAACANANAACANACGGAGACGCCNNACNACCCCGCCCTAAAAACACGNGTGGATATTGTNNCNGNNACGNAACATATTCCCGATTNCGTGANTGGGTCTAGCATTNAGTCCTTNGGAGACGGNAGNNCGGCAGACAACGCTNTNACATCGTGCAC] consensusID : consensus_300#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence [ATCGCCCGAGGTTTTTCACAACGCGAAAAAAATGCCCGCAATCGAAGCTACAATTAAAAGCCAGGGCGCTACCGAGGCGGTCACACAAGAGGTCACGGGCAGCAATATGAGTGAGCTGATTTCAAGCATCAAAGTGGTAAAGGATTCGTTGAACGATCTGCTCACCGCGATTGTGGTACGGGACGCCGAGTTCCGGGTAGTGCACGGAAGGAACGCACGGAAGAAGCTACAGAAGAAGGGAGCAGCTGATGGTGAAAGTAGTGATGAACCGGAGGAGGGCGACAAAGAATCCAACAAGCGGCAGAAGGTGTAGGCCGTAGAACAGCTTTCAAAGTGCAGTATAAAGCGATAGCGAATGCATTTTTGAATTTTACCGGTTTCAGTTGTATGTAAGTGTGCCTTTTCGAATTGACCATGTTTTGAAGTAAAAGCAGGCAGCATGCGACCGGTGCGCGCATGTCGCCACCAACCTGCCGTTGCTAGGACGCAATGTT] [+] EMBL AL933695 [ATCGCCCGAGGTTTTTCACAACGCGAAAAAAATGCCCGCAATCGAAGCTACAATTAAAAGCCAGGGCGCTACCGAGGCGGTCACACAAGAGGTCACGGGCAGCAATATGAGTGAGCTGATTTCAAGCATCAAAGTGGTAAAGGATTCGTTGAACGATCTGCTCACCGCGATTGTGGTACGGGACGCCGAGTTCCGGGTAGTGCACGGAAGGAACGCACGGAAGAAGCTACAGAAGAAGGGAGCAGCTGATGGTGAAAGTAGTGATGAACCGGAGGAGGGCGACAAAGAATCCAACAAGCGGCAGAAGGTGTAGGCCGTAGAACAGCTTTCAAAGTGCAGTATAAAGCGATAGCGAATGCATTTTTGAATTTTACCGGTTTCAGTTGTATGTAAGTGTGCCTTTTCGAATTGACCATGTTTTGAAGTAAAAGCAGGCAGCATGCGACCGGTGCGCGCATGTCGCCACCAACCTGCCGTTGCTAGGACGCAATGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_300#0 CATGCAGAATCGCCCGAGGTTAATTCACAACGCGAAAAAA-TGGCCGCA-TCGAAGCTAC 58 consensus_300#1 --------ATCGCCCGAGGTTT-TTCACAACGCGAAAAAAATGCCCGCAATCGAAGCTAC 51 ************* ***************** ** ***** ********** consensus_300#0 AATTAAAAGCCAGTGCGCTACCGATGCGGTCACACAAGAGTGTCACGGGCAGCAATATAG 118 consensus_300#1 AATTAAAAGCCAGGGCGCTACCGAGGCGGTCACACAAGAG-GTCACGGGCAGCAATAT-G 109 ************* ********** *************** ***************** * consensus_300#0 AGTGAGCTGATTTCAAGCATACAAAGTGGTAAAAGATTACCTTGAACGATCTGCTACACC 178 consensus_300#1 AGTGAGCTGATTTCAAGCAT-CAAAGTGGTAAAGGATT-CGTTGAACGATCTGCT-CACC 166 ******************** ************ **** * ************** **** consensus_300#0 GCGATTTGTGTGTACGTGGACTGCTGAGTTCTGTGTGTAGTGCACGAAATGTGAACTGTG 238 consensus_300#1 GCGATT-GTG-GTACG-GGAC-GCCGAGTTCCGGGT--AGTGCACGGAA-GGAACGCACG 219 ****** *** ***** **** ** ****** * ** ******** ** * * * consensus_300#0 CAATAATCCCCCCCTCTCCCCCCCGCGCCCAAACGCAACTGTAAACTGTGCGAGGAAT-A 297 consensus_300#1 GAAGAAGCT---------------ACAGAAGAAGGGAGCAGCTGATGGTGAAAGTAGTGA 264 ** ** * * ** * * * * * *** ** * * * consensus_300#0 TCAAGCTGTGGNGCGTGAGAGCGATGCCGGCAGAAGCAGTGAGCAGCAGAACGAGCNAGA 357 consensus_300#1 TGAACCGGAGGAGGGCGACAAAGAATCCAACAAGCGGCAGAAGGTGTAGGCCGTAGAACA 324 * ** * * ** * * ** * ** ** ** * ** * ** ** * * consensus_300#0 GTGCTGAGCACTAAACACACGCAGAGTGTNTGTAGATTTTTGGCTTGCGATCCATACAAC 417 consensus_300#1 GCTTTCAAAGTGCAGTATAAAGCGATAGCGAATGCATTTTTGAATTTTACCGGTTTCAGT 384 * * * * * * ** * * ******* ** * ** consensus_300#0 CGAGGAGCTAGATAATTCACNGTTANGGTCCACATTCTTTGNTGTAACATGCCNCNAGCA 477 consensus_300#1 TGTATG--TAAGTG-TGCCTTTTCGAATTGACCATGTTTTGAAGTAA-AAGCAGGCAGCA 440 * ** * * * * * *** **** **** * ** **** consensus_300#0 AACCCCAGCGCTTGCACACACACANAACGCCCGAGCGCAGGTAAGCANACAGGGTAGGGA 537 consensus_300#1 TGCGACCG-GTGCGCGCATGTCGCCACCAACCTGCCGTTGCTAGG-ACGCAATGTT---- 494 * * * * ** ** * * ** ** * ** * * ** ** consensus_300#0 CANCCAGGNGTGTTCGGTTGTAGGTTGNACAGTTGGAACAGTCGACCGGTGTCATANCGC 597 consensus_300#1 ------------------------------------------------------------ consensus_300#0 GTAGAGGAAATNNNCGCGCAGTCACACTNAAACAANGGGTGAGGATACCCCTNTTNATAC 657 consensus_300#1 ------------------------------------------------------------ consensus_300#0 GCGGTTACGCCTAAANTAAACGAGACAGAATAAAAAAGGAATCNGANGTGCAACGTTGCT 717 consensus_300#1 ------------------------------------------------------------ consensus_300#0 CGNGAACTATAATAANGCCAACAGGGGCAGGAACTAAAGGCTTAGCTTCACCNNGGTGCA 777 consensus_300#1 ------------------------------------------------------------ consensus_300#0 NACGCCATNATGGGTTGAAGCANTCCCCNCTNGGTACCCAAACNGTGGTGCAGCNAAGCG 837 consensus_300#1 ------------------------------------------------------------ consensus_300#0 ANCACGGGGACTTACACAAANTNNCTGTGGCCTCGTGNCNAAACANANAACANACGGAGA 897 consensus_300#1 ------------------------------------------------------------ consensus_300#0 CGCCNNACNACCCCGCCCTAAAAACACGNGTGGATATTGTNNCNGNNACGNAACATATTC 957 consensus_300#1 ------------------------------------------------------------ consensus_300#0 CCGATTNCGTGANTGGGTCTAGCATTNAGTCCTTNGGAGACGGNAGNNCGGCAGACAACG 1017 consensus_300#1 ------------------------------------------------------------ consensus_300#0 CTNTNACATCGTGCAC 1033 consensus_300#1 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||