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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3003#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 698 fasta sequence
[TTAACATCAACATCTACACCGTGTACTACATCCTGAAGCAGTACAGAAGAACCGGCCAAGTGTTTTCCGCAGAACGTGGAGGACACAATGCTAAAGCGTTATCAGACGACGTTGCGCAAAGTATTCGCCAGTGGTTTGAAGAGGACAGCACACTGAGGCCGAAGCAACTGACCCAGAAGGTGTGGGAACAGTACCATATACGTGTGAGTCCATGCGCCGTTCAACGTGAGTTGAAAGACTTGCAGAAGAAGTTATATAAAAGCATGCAGCCCGTTTCCAAACCGAACAGTACCATTCAGCACAAGAATAATTCTAATTGTAATGCGACAAGAAAAGAATCCCTTGCCATAAAAGACTGTCTTGTAGCGAACGAAAGCACAGTATTTATCAAGCAGGAATACGGCAACAGCAGTGACGATGATGCACAGTTAACAGATCACATTGACATTGGCGAAACTCAGCTAACTTACGGCAGTGGTGATTTCAAAGACAAATTTGAACCTTCTAACAGCGCTCATACCGGTATTAGACGTCCACATGGGACGGAATCAGGAGCATACCTAGGTTCTGTTACAAATGGAGCAATACAAGATTATGCAGAATCTGAGGGCGAATACACAGAGGATCCACTTGGAAGCAGCCCCCCTCCACACCTTTCCATCCACAACCAGGAAAAAACAGATCCCAGCAGACGACTC]
[+] EMBL BX625251 [TTAACATCAACATCTACACCGTGTACTACATCCTGAAGCAGTACAGAAGAACCGGCCAAGTGTTTTCCGCAGAACGTGGAGGACACAATGCTAAAGCGTTATCAGACGACGTTGCGCAAAGTATTCGCCAGTGGTTTGAAGAGGACAGCACACTGAGGCCGAAGCAACTGACCCAGAAGGTGTGGGAACAGTACCATATACGTGTGAGTCCATGCGCCGTTCAACGTGAGTTGAAAGACTTGCAGAAGAAGTTATATAAAAGCATGCAGCCCGTTTCCAAACCGAACAGTACCATTCAGCACAAGAATAATTCTAATTGTAATGCGACAAGAAAAGAATCCCTTGCCATAAAAGACTGTCTTGTAGCGAACGAAAGCACAGTATTTATCAAGCAGGAATACGGCAACAGCAGTGACGATGATGCACAGTTAACAGATCACATTGACATTGGCGAAACTCAGCTAACTTACGGCAGTGGTGATTTCAAAGACAAATTTGAACCTTCTAACAGCGCTCATACCGGTATTAGACGTCCACATGGGACGGAATCAGGAGCATACCTAGGTTCTGTTACAAATGGAGCAATACAAGATTATGCAGAATCTGAGGGCGAATACACAGAGGATCCACTTGGAAGCAGCCCCCCTCCACACCTTTCCATCCACAACCAGGAAAAAACAGATCCCAGCAGACGACTC]
consensusID : consensus_3003#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence
[TCTAATGTGATCAGTCAGATGTTATTTGCGTGCGTGAAAAAATTGTATTCTTACTAATCAGTGATCAAAAAATCGTCCAATAACTAGAAATATGGAATCGTGCAAAAAACAACCAGCGACCGCTGGTTCTGCTAGCCGCAGTTCGAGAGGCAAAAAGACTGGAACCACGAAAAAGCAAACAAGCGATAAGGATAGAGAACGAATCGTTAATGCATATTTGAAAGGATTCGGTGCAAAAATGATCAGCAACATGCTTAACATCAACATCTACACCGTGTACTACATCCTGAAGCAGTACAGAAGAAGTTATATAAAAGCATGCAGCCCGTTTCCAAACCGAACAGTACCATTCAGCACAAGAATGATTCTAATTGTAATGCGACAAGAAAAGAATCCCTTGCCATAAAAGACTGTCTTGTAGCGAACGAAAGCACAGTATTTATCAAGCAGGAATACGGCAACAGCAGTGACGATGATGCACAGTTAACAGATCACATTGACATTGGCGAAACTCAGCTAACTTTACGGCAGTGNNGATTTCAAAGACCAAATTTGAACCTTTCTAACAGCGCTCATACCGGTATTAGACCGTCCACATTGGNGACGGAATCCA]
[+] EMBL BX625066 [TCTAATGTGATCAGTCAGATGTTATTTGCGTGCGTGAAAAAATTGTATTCTTACTAATCAGTGATCAAAAAATCGTCCAATAACTAGAAATATGGAATCGTGCAAAAAACAACCAGCGACCGCTGGTTCTGCTAGCCGCAGTTCGAGAGGCAAAAAGACTGGAACCACGAAAAAGCAAACAAGCGATAAGGATAGAGAACGAATCGTTAATGCATATTTGAAAGGATTCGGTGCAAAAATGATCAGCAACATGCTTAACATCAACATCTACACCGTGTACTACATCCTGAAGCAGTACAGAAGAAGTTATATAAAAGCATGCAGCCCGTTTCCAAACCGAACAGTACCATTCAGCACAAGAATGATTCTAATTGTAATGCGACAAGAAAAGAATCCCTTGCCATAAAAGACTGTCTTGTAGCGAACGAAAGCACAGTATTTATCAAGCAGGAATACGGCAACAGCAGTGACGATGATGCACAGTTAACAGATCACATTGACATTGGCGAAACTCAGCTAACTTTACGGCAGTGNNGATTTCAAAGACCAAATTTGAACCTTTCTAACAGCGCTCATACCGGTATTAGACCGTCCACATTGGNGACGGAATCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3003#0 --------------------------------------------------TTAACA-TCA 9
consensus_3003#1 TCTAATGTGATCAGTCAGATGTTATTTGCGTGCGTGAAAAAATTGTATTCTTACTAATCA 60
*** * ***
consensus_3003#0 AC-ATCTACACCGTGTACTACATCCTGAAGCA-GTACAGAAGAACCGGCCAAGTGTTTTC 67
consensus_3003#1 GTGATCAAAAAATCGTCCAATAACTAGAAATATGGAATCGTGCAAAAAACAACCAGCGAC 120
*** * * ** * * * * *** * * * * * *** *
consensus_3003#0 CGCAGAACGTGGAGGACACAATGCTAAAGCGTTATCAGAC-GACGTTGCGCAAAGTATTC 126
consensus_3003#1 CGCTGGTTCTGCTAGCCGCAGTTCGAGAG-GCAAAAAGACTGGAACCACG-AAAAAGCAA 178
*** * ** * * ** * * * ** * * **** * ** ***
consensus_3003#0 GCCAGTGGTTTGAA--GAGGACAGCACACTGAGGCCGAAGC-AACTGACCCAGAAGGTGT 183
consensus_3003#1 ACAAGCGATAAGGATAGAGAACGAATCGTTAATGCATATTTGAAAGGATTCGGTGCAAAA 238
* ** * * * * *** ** * * * ** * ** ** * *
consensus_3003#0 GGGAACAGTACCATATACG-TGTGAGTCCATGCGCCGTTCAACGTGAGTTGAAAGACTTG 242
consensus_3003#1 ATGATCAGCAACATGCTTAACATCAACATCTACACCGTGTACTACATCCTGAAGCAGT-A 297
** *** * *** * * * * **** * **** * *
consensus_3003#0 CAGAAGAAGTTATATAAAAGCATGCAGCCCGTTTCCAAACCGAACAGTACCATTCAGCAC 302
consensus_3003#1 CAGAAGAAGTTATATAAAAGCATGCAGCCCGTTTCCAAACCGAACAGTACCATTCAGCAC 357
************************************************************
consensus_3003#0 AAGAATAATTCTAATTGTAATGCGACAAGAAAAGAATCCCTTGCCATAAAAGACTGTCTT 362
consensus_3003#1 AAGAATGATTCTAATTGTAATGCGACAAGAAAAGAATCCCTTGCCATAAAAGACTGTCTT 417
****** *****************************************************
consensus_3003#0 GTAGCGAACGAAAGCACAGTATTTATCAAGCAGGAATACGGCAACAGCAGTGACGATGAT 422
consensus_3003#1 GTAGCGAACGAAAGCACAGTATTTATCAAGCAGGAATACGGCAACAGCAGTGACGATGAT 477
************************************************************
consensus_3003#0 GCACAGTTAACAGATCACATTGACATTGGCGAAACTCAGCTAACTT-ACGGCAGTGGTGA 481
consensus_3003#1 GCACAGTTAACAGATCACATTGACATTGGCGAAACTCAGCTAACTTTACGGCAGTGNNGA 537
********************************************** ********* **
consensus_3003#0 TTTCAAAGAC-AAATTTGAACCTT-CTAACAGCGCTCATACCGGTATTAGAC-GTCCACA 538
consensus_3003#1 TTTCAAAGACCAAATTTGAACCTTTCTAACAGCGCTCATACCGGTATTAGACCGTCCACA 597
********** ************* *************************** *******
consensus_3003#0 T--GGGACGGAATCAGGAGCATACCTAGGTTCTGTTACAAATGGAGCAATACAAGATTAT 596
consensus_3003#1 TTGGNGACGGAATCCA-------------------------------------------- 613
* * *********
consensus_3003#0 GCAGAATCTGAGGGCGAATACACAGAGGATCCACTTGGAAGCAGCCCCCCTCCACACCTT 656
consensus_3003#1 ------------------------------------------------------------
consensus_3003#0 TCCATCCACAACCAGGAAAAAACAGATCCCAGCAGACGACTC 698
consensus_3003#1 ------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||